메뉴 건너뛰기




Volumn 5, Issue 1, 2016, Pages

Chromosomer: A reference-based genome arrangement tool for producing draft chromosome sequences

Author keywords

Alignment; Chromosome assembly; Reference assisted assembly

Indexed keywords

CONTIG;

EID: 85007385179     PISSN: None     EISSN: 2047217X     Source Type: Journal    
DOI: 10.1186/s13742-016-0141-6     Document Type: Article
Times cited : (54)

References (27)
  • 10
    • 0346505466 scopus 로고    scopus 로고
    • Hierarchical scaffolding with Bambus
    • Pop M, Kosack DS, Salzberg SL. Hierarchical scaffolding with Bambus. Genome Res. 2004;14(1):149-59.
    • (2004) Genome Res , vol.14 , Issue.1 , pp. 149-159
    • Pop, M.1    Kosack, D.S.2    Salzberg, S.L.3
  • 12
    • 23144442407 scopus 로고    scopus 로고
    • Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies
    • van Hijum SA, Zomer AL, Kuipers OP, Kok J. Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. Nucleic Acids Res. 2005;33(suppl 2):560-6.
    • (2005) Nucleic Acids Res , vol.33 , pp. 560-566
    • van Hijum, S.A.1    Zomer, A.L.2    Kuipers, O.P.3    Kok, J.4
  • 13
    • 34547852218 scopus 로고    scopus 로고
    • OSLay: optimal syntenic layout of unfinished assemblies
    • Richter DC, Schuster SC, Huson DH. OSLay: optimal syntenic layout of unfinished assemblies. Bioinformatics. 2007;23(13):1573-9.
    • (2007) Bioinformatics , vol.23 , Issue.13 , pp. 1573-1579
    • Richter, D.C.1    Schuster, S.C.2    Huson, D.H.3
  • 14
    • 67650735586 scopus 로고    scopus 로고
    • ABACAS: algorithm-based automatic contiguation of assembled sequences
    • Assefa S, Keane TM, Otto TD, Newbold C, Berriman M. ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinformatics. 2009;25(15):1968-9.
    • (2009) Bioinformatics , vol.25 , Issue.15 , pp. 1968-1969
    • Assefa, S.1    Keane, T.M.2    Otto, T.D.3    Newbold, C.4    Berriman, M.5
  • 16
    • 84902492066 scopus 로고    scopus 로고
    • AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
    • Bao E, Jiang T, Girke T. AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references. Bioinformatics. 2014;30(12):319-28.
    • (2014) Bioinformatics , vol.30 , Issue.12 , pp. 319-328
    • Bao, E.1    Jiang, T.2    Girke, T.3
  • 17
    • 84902459237 scopus 로고    scopus 로고
    • Ragout-a reference-assisted assembly tool for bacterial genomes
    • Kolmogorov M, Raney B, Paten B, Pham S. Ragout-a reference-assisted assembly tool for bacterial genomes. Bioinformatics. 2014;30(12):302-9.
    • (2014) Bioinformatics , vol.30 , Issue.12 , pp. 302-309
    • Kolmogorov, M.1    Raney, B.2    Paten, B.3    Pham, S.4
  • 18
    • 79961194036 scopus 로고    scopus 로고
    • SyMAP v3.4: a turnkey synteny system with application to plant genomes
    • Soderlund C, BomhoffM, Nelson WM. SyMAP v3.4: a turnkey synteny system with application to plant genomes. Nucleic Acids Res. 2011;39(10): 68-8.
    • (2011) Nucleic Acids Res , vol.39 , Issue.10 , pp. 68-68
    • Soderlund, C.1    Bomhoff, M.2    Nelson, W.M.3
  • 21
    • 0036606576 scopus 로고    scopus 로고
    • Fast algorithms for large-scale genome alignment and comparison
    • Delcher AL, Phillippy A, Carlton J, Salzberg SL. Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res. 2002;30(11):2478-83.
    • (2002) Nucleic Acids Res , vol.30 , Issue.11 , pp. 2478-2483
    • Delcher, A.L.1    Phillippy, A.2    Carlton, J.3    Salzberg, S.L.4
  • 25
    • 0141815478 scopus 로고    scopus 로고
    • Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes
    • Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D. Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci. 2003;100(20):11484-9.
    • (2003) Proc Natl Acad Sci , vol.100 , Issue.20 , pp. 11484-11489
    • Kent, W.J.1    Baertsch, R.2    Hinrichs, A.3    Miller, W.4    Haussler, D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.