Genome sequence of the endophytic bacterium Bacillus thuringiensis strain KB1, a potential biocontrol agent against phytopathogens

Genome Announcements

Volumn 4, Issue 2, 2016, Pages

  Jeong, Haeyoung ^a,b   Jo, Sung Hee ^a,b   Hong, Chi Eun ^a,b   Park, Jeong Mee ^a,b  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b University of Science and Technology (UST)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85007355844     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00279-16     Document Type: Article

References (16)

1. Selvakumar G, Kundu S, Gupta AD, Shouche YS, Gupta HS. 2008. Isolation and characterization of nonrhizobial plant growth promoting bacteria from nodules of kudzu (Pueraria thunbergiana) and their effect on wheat seedling growth. Curr Microbiol 56:134-139. http://dx.doi.org/10.1007/s00284-007-9062-z.
2. Mishra PK, Mishra S, Selvakumar G, Bisht JK, Kundu S, Gupta HS. 2009. Coinoculation of Bacillus thuringeinsis-KR1 with Rhizobium leguminosarum enhances plant growth and nodulation of pea (Pisum sativum L.) and lentil (Lens culinaris L.). World J Microbiol Biotechnol 25:753-761. http://dx.doi.org/10.1007/s11274-009-9963-z.
3. Mishra PK, Mishra S, Selvakumar G, Bisht JK, Kundu S, Gupta HS. 2009. Enhanced soybean (Glycine max L.) plant growth and nodulation by Bradyrhizobium japonicum-SB1 in presence of Bacillus thuringiensis-KR1. Acta Agric Scand B Soil Plant Sci 59:189-196. http://dx.doi.org/10.1080/09064710802040558.
4. Praça LB, Gomes ACMM, Cabral G, Martins ES, Sujii ER. 2012. Endophytic colonization by Brazilian strains of Bacillus thuringiensis on cabbage seedlings crown in vitro. Bt Res 3:11-19. http://dx.doi.org/10.5376/bt.2012.03.0003.
5. Argôlo-Filho RC, Loguercio LL. 2013. Bacillus thuringiensis is an environmental pathogen and host-specificity has developed as an adaptation to human-generated ecological niches. Insects 5:62-91. http://dx.doi.org/10.3390/insects5010062.
6. Hong CE, Jo SH, Moon JY, Lee J-S, Kwon S-Y, Park JM. 2015. Isolation of novel leaf-inhabiting endophytic bacteria in Arabidopsis thaliana and their antagonistic effects on phytophathogens. Plant Biotechnol Rep 9:451-458. http://dx.doi.org/10.1007/s11816-015-0372-5.
7. Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114-2120. http://dx.doi.org/10.1093/bioinformatics/btu170.
8. Crusoe MR, Alameldin HF, Awad S, Boucher E, Caldwell A, Cartwright R, Charbonneau A, Constantinides B, Edvenson G, Fay S, Fenton J, Fenzl T, Fish J, Garcia-Gutierrez L, Garland P, Gluck J, Gonzalez I, Guermond S, Guo J, Gupta A, Herr JR, Howe A, Hyer A, Harpfer A, Irber L, Kidd R, Lin D, Lippi J, Mansour T, McA'Nulty P, McDonald E, Mizzi J, Murray KD, Nahum JR, Nanlohy K, Nederbragt AJ, Ortiz-Zuazaga H, Ory J, Pell J, Pepe-Ranney C, Russ ZN, Schwarz E, Scott C, Seaman J, Sievert S, Simpson J, Skennerton CT, Spencer J, Srinivasan R, Standage D, Stapleton JA, Steinman SR, Stein J, Taylor B, Trimble W, Wiencko HL, Wright M, Wyss B, Zhang Q, Zyme E, Brown CT. 2015. The khmer software package: enabling efficient nucleotide sequence analysis. F1000Res 4:900. http://dx.doi.org/10.12688/f1000research.6924.1.
9. Weber T, Blin K, Duddela S, Krug D, Kim HU, Bruccoleri R, Lee SY, Fischbach MA, Müller R, Wohlleben W, Breitling R, Takano E, Medema MH. 2015. antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters. Nucleic Acids Res 43: W237-W243. http://dx.doi.org/10.1093/nar/gkv437.
10. Jolley KA, Maiden MC. 2010. BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 11:595. http://dx.doi.org/10.1186/1471-2105-11-595.
11. Kim K, Cheon E, Wheeler KE, Youn Y, Leighton TJ, Park C, Kim W, Chung SI. 2005. Determination of the most closely related bacillus isolates to Bacillus anthracis by multilocus sequence typing. Yale J Biol Med 78: 1-14.
12. Paik HD, Bae SS, Park SH, Pan JG. 1997. Identification and partial characterization of tochicin, a bacteriocin offduced by Bacillus thuringiensis subsp. tochigiensis. J Ind Microbiol Biotechnol 19:294-298. http://dx.doi.org/10.1038/sj.jim.2900462.
13. Mende DR, Sunagawa S, Zeller G, Bork P. 2013. Accurate and universal delineation of prokaryotic species. Nat Methods 10:881-884. http://dx.doi.org/10.1038/nmeth.2575.
14. Richter M, Rosselló-Móra R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106: 19126-19131. http://dx.doi.org/10.1073/pnas.0906412106.
15. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. 2013. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 14:60. http://dx.doi.org/10.1186/1471-2105-14-60.
16. Liu Y, Lai Q, Göker M, Meier-Kolthoff JP, Wang M, Sun Y, Wang L, Shao Z. 2015. Genomic insights into the taxonomic status of the Bacillus cereus group. Sci Rep 5:14082. http://dx.doi.org/10.1038/srep14082.