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Volumn 1537, Issue , 2017, Pages 153-163

Analysis of 16s rRNA gene amplicon sequences using the qiime software package

Author keywords

16S rRNA gene; Bioinformatics; High throughput sequencing; Microbial ecology; Operational taxonomic unit (OTU); QIIME; Sequence analysis

Indexed keywords

GENOMIC DNA; RNA 16S;

EID: 85006008583     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-6685-1_9     Document Type: Chapter
Times cited : (78)

References (18)
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  • 7
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    • Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes
    • Kim M, Morrison M, Yu Z (2011) Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes. J Microbiol Methods 84:81–87
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    • Kim, M.1    Morrison, M.2    Yu, Z.3
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    • Species divergence and the measurement of microbial diversity
    • Lozupone CA, Knight R (2008) Species divergence and the measurement of microbial diversity. FEMS Microbiol Rev 32:557–578
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    • Lozupone, C.A.1    Knight, R.2
  • 12
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac—an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C, Hamady M, Knight R (2006) UniFrac—an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7:371
    • (2006) BMC Bioinformatics , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 15
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    • UPARSE: Highly accurate OTU sequences from microbial amplicon reads
    • Edgar RC (2013) UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods 10:996–998
    • (2013) Nat Methods , vol.10 , pp. 996-998
    • Edgar, R.C.1
  • 17
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    • Waste not, want not: Why rarefying microbiome data is inadmissible
    • McMurdie PJ, Holmes S (2014) Waste not, want not: why rarefying microbiome data is inadmissible. PLoS Comput Biol 10: e1003531
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    • McMurdie, P.J.1    Holmes, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.