Assay optimization for molecular detection of Zika virus;Optimisation des tests pour la détection moléculaire du virus Zika;Optimización de la prueba para la detección molecular del virus de Zika

Bulletin of the World Health Organization

Volumn 94, Issue 12, 2016, Pages 880-892

  Corman, Victor M ^a   Rasche, Andrea ^a   Baronti, Cecile ^b   Aldabbagh, Souhaib ^a   Cadar, Daniel ^c   Reusken, Chantal B E M ^d   Pas, Suzan D ^d   Goorhuis, Abraham ^e   Schinkel, Janke ^e   Molenkamp, Richard ^e   Kümmerer, Beate M ^a   Bleicker, Tobias ^a   Brünink, Sebastian ^a   Eschbach Bludau, Monika ^a   Eis Hübinger, Anna M ^a   Koopmans, Marion P ^d   Schmidt Chanasit, Jonas ^c   Grobusch, Martin P ^e   De Lamballerie, Xavier ^b   Drosten, Christian ^a   Drexler, Jan Felix ^a   more..

^a UNIVERSITY OF BONN   (Germany)

^b Aix Marseille University IRD 190 Inserm 1207   (France)

^c BERNHARD NOCHT INSTITUTE FOR TROPICAL MEDICINE   (Germany)

^d ERASMUS MEDICAL CENTER   (Netherlands)

^e UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

OLIGONUCLEOTIDE;

BIOASSAY; BLOOD; CONCENTRATION (COMPOSITION); CYTOPLASMIC INCOMPATIBILITY; DETECTION METHOD; MOLECULAR ANALYSIS; OPTIMIZATION; RNA; TESTING METHOD; URINE; VIRUS;

ARTICLE; CONTROLLED STUDY; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY ANALYSIS; VIRUS DETECTION; VIRUS LOAD; ZIKA VIRUS; PROCEDURES; SENSITIVITY AND SPECIFICITY; STANDARDS; ZIKA FEVER;

ZIKA VIRUS;

HUMANS; REAL-TIME POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; ZIKA VIRUS INFECTION;

EID: 85005989928     PISSN: 00429686     EISSN: 15640604     Source Type: Journal    
DOI: 10.2471/BLT.16.175950     Document Type: Article

References (44)

1. Kuno G, Chang GJ. Full-length sequencing and genomic characterization of Bagaza, Kedougou, and Zika viruses. Arch Virol. 2007;152(4):687-96. doi: http://dx.doi.org/10.1007/s00705-006-0903-z PMID: 17195954
2. Duffy MR, Chen TH, Hancock WT, Powers AM, Kool JL, Lanciotti RS, et al. Zika virus outbreak on Yap Island, Federated States of Micronesia. N Engl J Med. 2009 Jun 11;360(24):2536-43. doi: http://dx.doi.org/10.1056/NEJMoa0805715 PMID: 19516034
3. Gatherer D, Kohl A. Zika virus: a previously slow pandemic spreads rapidly through the Americas. J Gen Virol. 2016 Feb;97(2):269-73. doi: http://dx.doi.org/10.1099/jgv.0.000381 PMID: 26684466
4. Cao-Lormeau VM, Blake A, Mons S, Lastère S, Roche C, Vanhomwegen J, et al. Guillain-Barré Syndrome outbreak associated with Zika virus infection in French Polynesia: a case-control study. Lancet. 2016 Apr 9;387(10027):1531-9. doi: http://dx.doi.org/10.1016/S0140-6736(16)00562-6 PMID: 26948433
5. Carteaux G, Maquart M, Bedet A, Contou D, Brugières P, Fourati S, et al. Zika Virus associated with meningoencephalitis. N Engl J Med. 2016 Apr 21;374(16):1595-6. doi: http://dx.doi.org/10.1056/NEJMc1602964 PMID: 26958738
6. Furtado JM, Espósito DL, Klein TM, Teixeira-Pinto T, da Fonseca BA. Uveitis associated with Zika virus infection. N Engl J Med. 2016 Jul 28;375(4):394-6. doi: http://dx.doi.org/10.1056/NEJMc1603618 PMID: 27332784
7. Tappe D, Nachtigall S, Kapaun A, Schnitzler P, Günther S, Schmidt-Chanasit J. Acute Zika virus infection after travel to Malaysian Borneo, September 2014. Emerg Infect Dis. 2015 May;21(5):911-3. doi: http://dx.doi.org/10.3201/eid2105.141960 PMID: 25898277
8. Calvet G, Aguiar RS, Melo AS, Sampaio SA, de Filippis I, Fabri A, et al. Detection and sequencing of Zika virus from amniotic fluid of fetuses with microcephaly in Brazil: a case study. Lancet Infect Dis. 2016 Jun;16(6):653-60. doi: http://dx.doi.org/10.1016/S1473-3099(16)00095-5 PMID: 26897108
9. Mlakar J, Korva M, Tul N, Popović M, Poljšak-Prijatelj M, Mraz J, et al. Zika virus associated with microcephaly. N Engl J Med. 2016 Mar 10;374(10):951-8. doi: http://dx.doi.org/10.1056/NEJMoa1600651 PMID: 26862926
10. Brasil P, Pereira JP Jr, Raja Gabaglia C, Damasceno L, Wakimoto M, Ribeiro Nogueira RM, et al. Zika virus infection in pregnant women in Rio de Janeiro-preliminary report. N Engl J Med. 2016 Mar 4;NEJMoa1602412. doi: http://dx.doi.org/10.1056/NEJMoa1602412 PMID: 26943629
11. Rasmussen SA, Jamieson DJ, Honein MA, Petersen LR. Zika Virus and birth defects-reviewing the evidence for causality. N Engl J Med. 2016 May 19;374(20):1981-7. doi: http://dx.doi.org/10.1056/NEJMsr1604338 PMID: 27074377
12. Waggoner JJ, Pinsky BA. Zika virus: diagnostics for an emerging pandemic threat. J Clin Microbiol. 2016 Apr;54(4):860-7. doi: http://dx.doi.org/10.1128/JCM.00279-16 PMID: 26888897
13. Lanciotti RS, Kosoy OL, Laven JJ, Velez JO, Lambert AJ, Johnson AJ, et al. Genetic and serologic properties of Zika virus associated with an epidemic, Yap State, Micronesia, 2007. Emerg Infect Dis. 2008 Aug;14(8):1232-9. doi: http://dx.doi.org/10.3201/eid1408.080287 PMID: 18680646
14. Charrel RN, Leparc-Goffart I, Pas S, de Lamballerie X, Koopmans M, Reusken C. Background review for diagnostic test development for Zika virus infection. Bull World Health Organ. 2016 Aug 1;94(8):574-584D. doi: http://dx.doi.org/10.2471/BLT.16.171207 PMID: 27516635
15. Faye O, Faye O, Diallo D, Diallo M, Weidmann M, Sall AA. Quantitative real-time PCR detection of Zika virus and evaluation with field-caught mosquitoes. Virol J. 2013 10 22;10(1):311. doi: http://dx.doi.org/10.1186/1743-422X-10-311 PMID: 24148652
16. Pyke AT, Daly MT, Cameron JN, Moore PR, Taylor CT, Hewitson GR, et al. Imported zika virus infection from the Cook Islands into Australia, 2014. PLoS Curr. 2014 06 02;6:6. PMID: 24944843
17. Drexler JF, de Souza Luna LK, Pedroso C, Pedral-Sampaio DB, Queiroz AT, Brites C, et al. Rates of and reasons for failure of commercial human immunodeficiency virus type 1 viral load assays in Brazil. J Clin Microbiol. 2007 Jun;45(6):2061-3. doi: http://dx.doi.org/10.1128/JCM.00136-07 PMID: 17392448
18. Simmonds P. SSE: a nucleotide and amino acid sequence analysis platform. BMC Res Notes. 2012 01 20;5(1):50. doi: http://dx.doi.org/10.1186/1756-0500-5-50 PMID: 22264264
19. Kwok S, Kellogg DE, McKinney N, Spasic D, Goda L, Levenson C, et al. Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies. Nucleic Acids Res. 1990 Feb 25;18(4):999-1005. doi: http://dx.doi.org/10.1093/nar/18.4.999 PMID: 2179874
20. Drexler JF, Kupfer B, Petersen N, Grotto RM, Rodrigues SM, Grywna K, et al. A novel diagnostic target in the hepatitis C virus genome. PLoS Med. 2009 Feb 10;6(2):e31. doi: http://dx.doi.org/10.1371/journal.pmed.1000031 PMID: 19209955
21. Drosten C, Göttig S, Schilling S, Asper M, Panning M, Schmitz H, et al. Rapid detection and quantification of RNA of Ebola and Marburg viruses, Lassa virus, Crimean-Congo hemorrhagic fever virus, Rift Valley fever virus, dengue virus, and yellow fever virus by real-time reverse transcription-PCR. J Clin Microbiol. 2002 Jul;40(7):2323-30. doi: http://dx.doi.org/10.1128/JCM.40.7.2323-2330.2002 PMID: 12089242
22. Moureau G, Temmam S, Gonzalez JP, Charrel RN, Grard G, de Lamballerie X. A real-time RT-PCR method for the universal detection and identification of flaviviruses. Vector Borne Zoonotic Dis. 2007 Winter;7(4):467-77. doi: http://dx.doi.org/10.1089/vbz.2007.0206 PMID: 18020965
23. Kitchen A, Shackelton LA, Holmes EC. Family level phylogenies reveal modes of macroevolution in RNA viruses. Proc Natl Acad Sci USA. 2011 Jan 4;108(1):238-43. doi: http://dx.doi.org/10.1073/pnas.1011090108 PMID: 21173251
24. Mackay IM. Real-time PCR in the microbiology laboratory. Clin Microbiol Infect. 2004 Mar;10(3):190-212. doi: http://dx.doi.org/10.1111/j.1198-743X.2004.00722.x PMID: 15008940
25. Donald CE, Qureshi F, Burns MJ, Holden MJ, Blasic JR Jr, Woolford AJ. An inter-platform repeatability study investigating real-time amplification of plasmid DNA. BMC Biotechnol. 2005 05 25;5(1):15. doi: http://dx.doi.org/10.1186/1472-6750-5-15 PMID: 15916714
26. Gourinat AC, O’Connor O, Calvez E, Goarant C, Dupont-Rouzeyrol M. Detection of Zika virus in urine. Emerg Infect Dis. 2015 Jan;21(1):84-6. doi: http://dx.doi.org/10.3201/eid2101.140894 PMID: 25530324
27. Atkinson B, Hearn P, Afrough B, Lumley S, Carter D, Aarons EJ, et al. Detection of Zika virus in semen. Emerg Infect Dis. 2016 May;22(5):940. PMID: 27088817
28. Barzon L, Pacenti M, Berto A, Sinigaglia A, Franchin E, Lavezzo E, et al. Isolation of infectious Zika virus from saliva and prolonged viral RNA shedding in a traveller returning from the Dominican Republic to Italy, January 2016. Euro Surveill. 2016;21(10):30159. doi: http://dx.doi.org/10.2807/1560-7917.ES.2016.21.10.30159 PMID: 26987769
29. Campos RM, Cirne-Santos C, Meira GL, Santos LL, de Meneses MD, Friedrich J, et al. Prolonged detection of Zika virus RNA in urine samples during the ongoing Zika virus epidemic in Brazil. J Clin Virol. 2016 Apr;77:69-70. doi: http://dx.doi.org/10.1016/j.jcv.2016.02.009 PMID: 26921737
30. Musso D, Roche C, Nhan TX, Robin E, Teissier A, Cao-Lormeau VM. Detection of Zika virus in saliva. J Clin Virol. 2015 Jul;68:53-5. doi: http://dx.doi.org/10.1016/j.jcv.2015.04.021 PMID: 26071336
31. Drosten C, Panning M, Drexler JF, Hänsel F, Pedroso C, Yeats J, et al. Ultrasensitive monitoring of HIV-1 viral load by a low-cost real-time reverse transcription-PCR assay with internal control for the 5′ long terminal repeat domain. Clin Chem. 2006 Jul;52(7):1258-66. doi: http://dx.doi.org/10.1373/clinchem.2006.066498 PMID: 16627558
32. Stöcker A, deCarvalho Dominguez Souza BF, Ribeiro TCM, Netto EM, Araujo LO, Corrêa JI, et al. Cosavirus infection in persons with and without gastroenteritis, Brazil. Emerg Infect Dis. 2012 Apr;18(4):656-9. doi: http://dx.doi.org/10.3201/eid1804.111415 PMID: 22469070
33. Panning M, Charrel RN, Donoso Mantke O, Landt O, Niedrig M, Drosten C. Coordinated implementation of chikungunya virus reverse transcription-PCR. Emerg Infect Dis. 2009 Mar;15(3):469-71. doi: http://dx.doi.org/10.3201/eid1503.081104 PMID: 19239767
34. Corman VM, Eckerle I, Bleicker T, Zaki A, Landt O, Eschbach-Bludau M, et al. Detection of a novel human coronavirus by real-time reverse-transcription polymerase chain reaction. Euro Surveill. 2012 09 27;17(39):20285. PMID: 23041020
35. Drosten C, Doerr HW, Lim W, Stöhr K, Niedrig M. SARS molecular detection external quality assurance. Emerg Infect Dis. 2004 Dec;10(12):2200-3. doi: http://dx.doi.org/10.3201/eid1012.040416 PMID: 15663861
36. Vaughn DW, Green S, Kalayanarooj S, Innis BL, Nimmannitya S, Suntayakorn S, et al. Dengue viremia titer, antibody response pattern, and virus serotype correlate with disease severity. J Infect Dis. 2000 Jan;181(1):2-9. doi: http://dx.doi.org/10.1086/315215 PMID: 10608744
37. Hoarau JJ, Jaffar Bandjee MC, Krejbich Trotot P, Das T, Li-Pat-Yuen G, Dassa B, et al. Persistent chronic inflammation and infection by Chikungunya arthritogenic alphavirus in spite of a robust host immune response. J Immunol. 2010 May 15;184(10):5914-27. doi: http://dx.doi.org/10.4049/jimmunol.0900255 PMID: 20404278
38. Duh D, Saksida A, Petrovec M, Ahmeti S, Dedushaj I, Panning M, et al. Viral load as predictor of Crimean-Congo hemorrhagic fever outcome. Emerg Infect Dis. 2007 Nov;13(11):1769-72. doi: http://dx.doi.org/10.3201/eid1311.070222 PMID: 18217568
39. Cumulative Zika suspected and confirmed cases reported by countries and territories in the Americas, 2015-2016 updated 7 April 2016. Washington and Geneva: Pan American Health Association and World Health Organization; 2016.
40. Thomas DL, Sharp TM, Torres J, Armstrong PA, Munoz-Jordan J, Ryff KR, et al. Local transmission of Zika virus-Puerto Rico, November 23, 2015-January 28, 2016. MMWR Morb Mortal Wkly Rep. 2016;02 19;65(6):154-8. doi: http://dx.doi.org/10.15585/mmwr.mm6506e2 PMID: 26890470
41. Brasil P, Calvet GA, Siqueira AM, Wakimoto M, de Sequeira PC, Nobre A, et al. Zika virus outbreak in Rio de Janeiro, Brazil: clinical characterization, epidemiological and virological aspects. PLoS Negl Trop Dis. 2016 04 12;10(4):e0004636. doi: http://dx.doi.org/10.1371/journal.pntd.0004636 PMID: 27070912
42. Musso D, Nhan T, Robin E, Roche C, Bierlaire D, Zisou K, et al. Potential for Zika virus transmission through blood transfusion demonstrated during an outbreak in French Polynesia, November 2013 to February 2014. Euro Surveill. 2014 04 10;19(14):20761. doi: http://dx.doi.org/10.2807/1560-7917.ES2014.19.14.20761 PMID: 24739982
43. Maintaining a safe and adequate blood supply during Zika virus outbreaks. Interim guidance [WHO/ZIKV/HS/16.1]. Geneva: World Health Organization; February 2016. Available from: http://who.int/csr/resources/publications/zika/Safe-blood_supply18Feb2016.pdf [cited 2016 Feb 23].
44. Dodd RY, Foster GA, Stramer SL. Keeping blood transfusion safe from West Nile virus: American Red Cross experience, 2003 to 2012. Transfus Med Rev. 2015 Jul;29(3):153-61. doi: http://dx.doi.org/10.1016/j.tmrv.2015.03.001 PMID: 25841631