-
1
-
-
0028899940
-
Clostridial infection in children
-
COI: 1:STN:280:DyaK2M7ntl2nsw%3D%3D, PID: 7869351
-
Brook I (1995) Clostridial infection in children. J Med Microbiol 42(2):78–82
-
(1995)
J Med Microbiol
, vol.42
, Issue.2
, pp. 78-82
-
-
Brook, I.1
-
2
-
-
34347399563
-
Metabolic endotoxemia initiates obesity and insulin resistance
-
COI: 1:CAS:528:DC%2BD2sXnvVWjurk%3D, PID: 17456850
-
Cani PD, Amar J, Iglesias MA, Poggi M, Knauf C, Bastelica D et al (2007) Metabolic endotoxemia initiates obesity and insulin resistance. Diabetes 56(7):1761–1772
-
(2007)
Diabetes
, vol.56
, Issue.7
, pp. 1761-1772
-
-
Cani, P.D.1
Amar, J.2
Iglesias, M.A.3
Poggi, M.4
Knauf, C.5
Bastelica, D.6
-
3
-
-
85011880681
-
Vfdb: a reference database for bacterial virulence factors
-
Chen L, Yang J, Yu J, Yao Z, Sun L, Shen Y et al (2005) Vfdb: a reference database for bacterial virulence factors. Nucleic Acids Res 333(Database issue):25–28
-
(2005)
Nucleic Acids Res
, vol.333Database issue
, pp. 25-28
-
-
Chen, L.1
Yang, J.2
Yu, J.3
Yao, Z.4
Sun, L.5
Shen, Y.6
-
4
-
-
84861904854
-
Vfdb 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors
-
PID: 22067448
-
Chen L, Xiong Z, Sun L, Yang J, Jin Q (2011) Vfdb 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. Nucleic Acids Res 40(Database issue):D641–D645
-
(2011)
Nucleic Acids Res
, vol.40Database issue
, pp. D641-D645
-
-
Chen, L.1
Xiong, Z.2
Sun, L.3
Yang, J.4
Jin, Q.5
-
5
-
-
79251625980
-
Supervised classification of human microbiota
-
Dan K, Costello EK, Knight R (2011) Supervised classification of human microbiota. FEMS Microbiol Rev 35(2):343–359
-
(2011)
FEMS Microbiol Rev
, vol.35
, Issue.2
, pp. 343-359
-
-
Dan, K.1
Costello, E.K.2
Knight, R.3
-
6
-
-
84924690678
-
Gut microbiome development along the colorectal adenoma-carcinoma sequence
-
COI: 1:CAS:528:DC%2BC2MXotlGksrs%3D, PID: 25758642
-
Feng Q, Liang S, Jia H, Stadlmayr A, Tang L, Lan Z et al (2015) Gut microbiome development along the colorectal adenoma-carcinoma sequence. Nat Commun 6:6528
-
(2015)
Nat Commun
, vol.6
, pp. 6528
-
-
Feng, Q.1
Liang, S.2
Jia, H.3
Stadlmayr, A.4
Tang, L.5
Lan, Z.6
-
7
-
-
84949772416
-
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
-
COI: 1:CAS:528:DC%2BC2MXhvFemsbjN, PID: 26633628
-
Forslund K, Hildebrand F, Nielsen T, Falony G, Le CE, Sunagawa S et al (2015) Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature 528(7581):262–266
-
(2015)
Nature
, vol.528
, Issue.7581
, pp. 262-266
-
-
Forslund, K.1
Hildebrand, F.2
Nielsen, T.3
Falony, G.4
Le, C.E.5
Sunagawa, S.6
-
8
-
-
0030183958
-
Salivary factors in children and adolescents with insulin-dependent diabetes mellitus
-
COI: 1:STN:280:DyaK2s%2FhtVKhsw%3D%3D, PID: 8857659
-
Karjalainen KM, Knuuttila ML, Käär ML (1996) Salivary factors in children and adolescents with insulin-dependent diabetes mellitus. Pediatr Dent 18(4):306–311
-
(1996)
Pediatr Dent
, vol.18
, Issue.4
, pp. 306-311
-
-
Karjalainen, K.M.1
Knuuttila, M.L.2
Käär, M.L.3
-
9
-
-
84871814687
-
Symptomatic atherosclerosis is associated with an altered gut metagenome
-
PID: 23212374
-
Karlsson FH, Fåk F, Nookaew I, Tremaroli V, Fagerberg B, Petranovic D et al (2012) Symptomatic atherosclerosis is associated with an altered gut metagenome. Nat Commun 3(4):1245
-
(2012)
Nat Commun
, vol.3
, Issue.4
, pp. 1245
-
-
Karlsson, F.H.1
Fåk, F.2
Nookaew, I.3
Tremaroli, V.4
Fagerberg, B.5
Petranovic, D.6
-
10
-
-
84878709716
-
Gut metagenome in european women with normal, impaired and diabetic glucose control
-
COI: 1:CAS:528:DC%2BC3sXotlGls7k%3D, PID: 23719380
-
Karlsson FH, Tremaroli V, Nookaew I, Bergström G, Behre CJ, Fagerberg B, Nielsen J, Bäckhed F (2013) Gut metagenome in european women with normal, impaired and diabetic glucose control. Nature 498(7452):99–103
-
(2013)
Nature
, vol.498
, Issue.7452
, pp. 99-103
-
-
Karlsson, F.H.1
Tremaroli, V.2
Nookaew, I.3
Bergström, G.4
Behre, C.J.5
Fagerberg, B.6
Nielsen, J.7
Bäckhed, F.8
-
11
-
-
84867634981
-
Mocat: a metagenomics assembly and gene prediction toolkit
-
PID: 23082188
-
Kultima JR, Sunagawa S, Li J, Chen W, Chen H, Mende DR et al (2012) Mocat: a metagenomics assembly and gene prediction toolkit. PLoS ONE 7(10):e47656
-
(2012)
PLoS ONE
, vol.7
, Issue.10
-
-
Kultima, J.R.1
Sunagawa, S.2
Li, J.3
Chen, W.4
Chen, H.5
Mende, D.R.6
-
12
-
-
78650803767
-
Oral administration of parabacteroides distasonis, antigens attenuates experimental murine colitis through modulation of immunity and microbiota composition
-
COI: 1:CAS:528:DC%2BC3MXhsl2nt7g%3D, PID: 21087444
-
Kverka M, Zakostelska Z, Klimesova K, Sokol D, Hudcovic T, Hrncir T et al (2011) Oral administration of parabacteroides distasonis, antigens attenuates experimental murine colitis through modulation of immunity and microbiota composition. Clin Exp Immunol 163(2):250–259
-
(2011)
Clin Exp Immunol
, vol.163
, Issue.2
, pp. 250-259
-
-
Kverka, M.1
Zakostelska, Z.2
Klimesova, K.3
Sokol, D.4
Hudcovic, T.5
Hrncir, T.6
-
13
-
-
67650711615
-
Soap2: an improved ultrafast tool for short read alignment
-
COI: 1:CAS:528:DC%2BD1MXovVeku7w%3D, PID: 19497933
-
Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K et al (2009) Soap2: an improved ultrafast tool for short read alignment. Bioinformatics 25(15):1966–1967
-
(2009)
Bioinformatics
, vol.25
, Issue.15
, pp. 1966-1967
-
-
Li, R.1
Yu, C.2
Li, Y.3
Lam, T.W.4
Yiu, S.M.5
Kristiansen, K.6
-
14
-
-
84905730165
-
An integrated catalog of reference genes in the human gut microbiome
-
COI: 1:CAS:528:DC%2BC2cXhtFSlsLjP, PID: 24997786
-
Li J, Jia H, Cai X, Zhong H, Feng Q, Sunagawa S et al (2014) An integrated catalog of reference genes in the human gut microbiome. Nat Biotechnol 32(8):834–841
-
(2014)
Nat Biotechnol
, vol.32
, Issue.8
, pp. 834-841
-
-
Li, J.1
Jia, H.2
Cai, X.3
Zhong, H.4
Feng, Q.5
Sunagawa, S.6
-
15
-
-
58149183697
-
Ardb—antibiotic resistance genes database
-
Liu B, Pop M (2009) Ardb—antibiotic resistance genes database. Nucleic Acids Res 37(Database issue):443–447
-
(2009)
Nucleic Acids Res
, vol.37Database issue
, pp. 443-447
-
-
Liu, B.1
Pop, M.2
-
16
-
-
84862024797
-
Img: the integrated microbial genomes database and comparative analysis system
-
Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y et al (2012) Img: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res 40(Database issue):D122
-
(2012)
Nucleic Acids Res
, vol.40Database issue
, pp. D122
-
-
Markowitz, V.M.1
Chen, I.M.2
Palaniappan, K.3
Chu, K.4
Szeto, E.5
Grechkin, Y.6
-
17
-
-
0028365317
-
Intraabdominal infection: a review
-
COI: 1:STN:280:DyaK2M%2FjsFKjsQ%3D%3D, PID: 7948510
-
Mcclean KL, Sheehan GJ, Harding GK (1994) Intraabdominal infection: a review. Clin Infect Dis 19(19):100–116
-
(1994)
Clin Infect Dis
, vol.19
, Issue.19
, pp. 100-116
-
-
Mcclean, K.L.1
Sheehan, G.J.2
Harding, G.K.3
-
18
-
-
77957654292
-
The interaction of gut microbes with host abc transporters
-
Mercadolubo R, Mccormick BA (2010) The interaction of gut microbes with host abc transporters. Gut Microbes 1(5):301–306
-
(2010)
Gut Microbes
, vol.1
, Issue.5
, pp. 301-306
-
-
Mercadolubo, R.1
Mccormick, B.A.2
-
19
-
-
84881559009
-
Faecalibacterium prausnitzii, and human intestinal health
-
COI: 1:CAS:528:DC%2BC3sXhtVKqsr7K, PID: 23831042
-
Miquel S, Martín R, Rossi O, Bermúdez-Humarán LG, Chatel JM, Sokol H et al (2013) Faecalibacterium prausnitzii, and human intestinal health. Curr Opin Microbiol 16(3):255–261
-
(2013)
Curr Opin Microbiol
, vol.16
, Issue.3
, pp. 255-261
-
-
Miquel, S.1
Martín, R.2
Rossi, O.3
Bermúdez-Humarán, L.G.4
Chatel, J.M.5
Sokol, H.6
-
21
-
-
83755173339
-
Risk models and scores for type 2 diabetes: systematic review
-
PID: 22123912
-
Noble D, Mathur R, Dent T, Meads C, Greenhalgh T (2011) Risk models and scores for type 2 diabetes: systematic review. BMJ 343(6):d7163
-
(2011)
BMJ
, vol.343
, Issue.6
, pp. d7163
-
-
Noble, D.1
Mathur, R.2
Dent, T.3
Meads, C.4
Greenhalgh, T.5
-
22
-
-
84897128562
-
Kingdom-agnostic metagenomics and the importance of complete characterization of enteric microbial communities
-
COI: 1:CAS:528:DC%2BC2cXmslWqsb0%3D, PID: 24508599
-
Norman JM, Handley SA, Virgin HW (2014) Kingdom-agnostic metagenomics and the importance of complete characterization of enteric microbial communities. Gastroenterology 146(6):1459–1469
-
(2014)
Gastroenterology
, vol.146
, Issue.6
, pp. 1459-1469
-
-
Norman, J.M.1
Handley, S.A.2
Virgin, H.W.3
-
23
-
-
41049102359
-
Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks
-
Oliveira AP, Patil KR, Nielsen J (2008) Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks. BMC Syst Biol 2(3):462–468
-
(2008)
BMC Syst Biol
, vol.2
, Issue.3
, pp. 462-468
-
-
Oliveira, A.P.1
Patil, K.R.2
Nielsen, J.3
-
24
-
-
14544268137
-
Uncovering transcriptional regulation of metabolism by using metabolic network topology
-
COI: 1:CAS:528:DC%2BD2MXitVSksro%3D, PID: 15710883
-
Patil KR, Nielsen J (2005) Uncovering transcriptional regulation of metabolism by using metabolic network topology. Proc Natl Acad Sci USA 102(8):2685–2689
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.8
, pp. 2685-2689
-
-
Patil, K.R.1
Nielsen, J.2
-
25
-
-
84867074831
-
A metagenome-wide association study of gut microbiota in type 2 diabetes
-
COI: 1:CAS:528:DC%2BC38XhsVaqt7fJ, PID: 23023125
-
Qin J, Li Y, Cai Z, Li S, Zhu J, Zhang F et al (2012) A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490(7418):55–60
-
(2012)
Nature
, vol.490
, Issue.7418
, pp. 55-60
-
-
Qin, J.1
Li, Y.2
Cai, Z.3
Li, S.4
Zhu, J.5
Zhang, F.6
-
26
-
-
4644279054
-
Bacteremia caused by clostridium symbiosum
-
PID: 15365052
-
Sameer Elsayed KZ (2004) Bacteremia caused by clostridium symbiosum. J Clin Microbiol 42(9):4390–4392
-
(2004)
J Clin Microbiol
, vol.42
, Issue.9
, pp. 4390-4392
-
-
Sameer Elsayed, K.Z.1
-
27
-
-
84872846834
-
Clostridium difficile infection in infants and children
-
PID: 23277317
-
Schutze GE, Willoughby RE, Diseases COI, Pediatrics AAO (2013) Clostridium difficile infection in infants and children. Pediatrics 131(1):196–200
-
(2013)
Pediatrics
, vol.131
, Issue.1
, pp. 196-200
-
-
Schutze, G.E.1
Willoughby, R.E.2
Diseases, C.O.I.3
Pediatrics, A.A.O.4
-
28
-
-
34249885875
-
A genome-wide association study of type 2 diabetes in finns detects multiple susceptibility variants
-
COI: 1:CAS:528:DC%2BD2sXmtVyitrY%3D, PID: 17463248
-
Scott LJ, Mohlke KL, Bonnycastle LL, Willer CJ, Li Y, Duren WL et al (2007) A genome-wide association study of type 2 diabetes in finns detects multiple susceptibility variants. Science 316(5829):1341–1345
-
(2007)
Science
, vol.316
, Issue.5829
, pp. 1341-1345
-
-
Scott, L.J.1
Mohlke, K.L.2
Bonnycastle, L.L.3
Willer, C.J.4
Li, Y.5
Duren, W.L.6
-
29
-
-
55949124035
-
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of crohn disease patients
-
COI: 1:CAS:528:DC%2BD1cXhtleks7%2FI, PID: 18936492
-
Sokol H, Pigneur B, Watterlot L, Lakhdari O, Bermúdezhumarán LG, Gratadoux JJ et al (2008) Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of crohn disease patients. Proc Natl Acad Sci USA 105(43):16731–16736
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.43
, pp. 16731-16736
-
-
Sokol, H.1
Pigneur, B.2
Watterlot, L.3
Lakhdari, O.4
Bermúdezhumarán, L.G.5
Gratadoux, J.J.6
-
30
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
PID: 17183312
-
Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444(7122):1027–1031
-
(2006)
Nature
, vol.444
, Issue.7122
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
31
-
-
84897127283
-
The virome in mammalian physiology and disease
-
COI: 1:CAS:528:DC%2BC2cXmtVCnurY%3D, PID: 24679532
-
Virgin HW (2014) The virome in mammalian physiology and disease. Cell 157(1):142–150
-
(2014)
Cell
, vol.157
, Issue.1
, pp. 142-150
-
-
Virgin, H.W.1
-
32
-
-
84866738529
-
Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome
-
COI: 1:CAS:528:DC%2BC38Xht1GlurzE, PID: 22728514
-
Vrieze A, Nood EV, Holleman F, Salojärvi J, Kootte RS, Bartelsman JFWM et al (2012) Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome. Gastroenterology 143(4):913–916(e7)
-
(2012)
Gastroenterology
, vol.143
, Issue.4
, pp. 910-913
-
-
Vrieze, A.1
Nood, E.V.2
Holleman, F.3
Salojärvi, J.4
Kootte, R.S.5
Bartelsman, J.F.W.M.6
-
33
-
-
84942693814
-
Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer
-
COI: 1:CAS:528:DC%2BC2MXhs1Kqsb7N
-
Yu J, Qiang F, Wong SH, Zhang D, Qiao YL, Qin Y et al (2015) Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer. Gut 33(5):905–912
-
(2015)
Gut
, vol.33
, Issue.5
, pp. 905-912
-
-
Yu, J.1
Qiang, F.2
Wong, S.H.3
Zhang, D.4
Qiao, Y.L.5
Qin, Y.6
-
34
-
-
84938817346
-
The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment
-
COI: 1:CAS:528:DC%2BC2MXht1WltLjE, PID: 26214836
-
Zhang X, Zhang D, Jia H, Feng Q, Wang D, Liang D et al (2015) The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment. Nat Med 21(8):895–905
-
(2015)
Nat Med
, vol.21
, Issue.8
, pp. 895-905
-
-
Zhang, X.1
Zhang, D.2
Jia, H.3
Feng, Q.4
Wang, D.5
Liang, D.6
|