Draft genome sequences of Propionibacterium acnes type strain ATCC6919 and antibiotic-resistant strain HL411PA1

Genome Announcements

Volumn 2, Issue 4, 2014, Pages

  Liu, Jared ^a   Cheng, Alison ^a   Bangayan, Nathanael Joshua ^a   Barnard, Emma ^a   Curd, Emily ^a,b   Craft, Noah ^c   Li, Huiying ^a,d  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c HARBOR UCLA MEDICAL CENTER   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85003707554     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00740-14     Document Type: Article

References (13)

1. Douglas HC, Gunter SE. 1946. The taxonomic position of corynebacterium acnes. J. Bacteriol. 52:15-23.
2. Zierdt CH, Webster C, Rude WS. 1968. Study of the anaerobic corynebacteria. Int. J. Syst. Bacteriol. 18:33-47. http://dx.doi.org/10.1099/00207713-18-1-33.
3. Voss JG. 1970. Differentiation of two groups of Corynebacterium acnes. J. Bacteriol. 101:392-397.
4. Pulverer G, Ko HL. 1973. Fermentative and serological studies on Propionibacterium acnes. Appl. Microbiol. 25:222-229.
5. Ross JI, Snelling AM, Carnegie E, Coates P, Cunliffe WJ, Bettoli V, Tosti G, Katsambas A, Peréz Del Pulgar JIG, Rollman O, Török L, Eady EA, Cove JH. 2003. Antibiotic-resistant acne: lessons from Europe. Br. J. Dermatol. 148:467-478. http://dx.doi.org/10.1046/j.1365-2133.2003.05067.x.
6. Tomida S, Nguyen L, Chiu B-H, Liu J, Sodergren E, Weinstock GM, Li H. 2013. Pan-genome and comparative genome analyses of Propionibacterium acnes reveal its genomic diversity in the healthy and diseased human skin microbiome. mBio 4:e00003-13. http://dx.doi.org/10.1128/mBio.00003-13.
7. Chevreux B, Wetter T, Suhai S. 1999. Genome sequence assembly using trace signals and additional sequence Information, p 45-56. In Computer science and biology. Proceedings of the German Conference on Bioinformatics, GCB '99. GCB, Hannover, Germany.
8. Gordon D, Abajian C, Green P. 1998. Consed: A graphical tool for sequence finishing. Genome Res. 8:195-202.
9. Lukashin AV, Borodovsky M. 1998. GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 26:1107-1115. doi: http://dx.doi.org/10.1093/nar/26.4.1107.
10. Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679. http://dx.doi.org/10.1093/bioinformatics/btm009.
11. Laslett D, Canback B. 2004. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 32:11-16. http://dx.doi.org/10.1093/nar/gkh152.
12. Fitz-Gibbon S, Tomida S, Chiu B-H, Nguyen L, Du C, Liu M, ElashoffD, Erfe MC, Loncaric A, Kim J, Modlin RL, Miller JF, Sodergren E, Craft N, Weinstock GM, Li H. 2013. Propionibacterium acnes strain populations in the human skin microbiome associated with acne. J. Invest. Dermatol. 133:2152-2160. http://dx.doi.org/10.1038/jid.2013.21.
13. Kasimatis G, Fitz-Gibbon S, Tomida S, Wong M, Li H. 2013. Analysis of complete genomes of Propionibacterium acnes reveals a novel plasmid and increased pseudogenes in an acne associated strain. Biomed Res. Int. 2013:918320. http://dx.doi.org/10.1155/2013/918320.