Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms

Nature Biotechnology

Volumn 34, Issue 12, 2016, Pages 1267-1278

  Royer, Loïc A ^a,b   Lemon, William C ^a   Chhetri, Raghav K ^a   Wan, Yinan ^a   Coleman, Michael ^b   Myers, Eugene W ^c   Keller, Philipp J ^a  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^b MAX PLANCK INSTITUTE OF MOLECULAR CELL BIOLOGY AND GENETICS   (Germany)

^c Coleman Technologies Incorporated ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGY; IMAGE RECONSTRUCTION; IMAGE RESOLUTION; OPTICAL PROPERTIES;

DROSOPHILA MELANOGASTER; FLUORESCENT MARKERS; HIGH-RESOLUTION IMAGING; IMAGING PERFORMANCE; LIGHT-SHEET MICROSCOPIES; MORPHOGENETIC CHANGES; OPTIMAL IMAGE QUALITY; SPATIO-TEMPORAL DYNAMICS;

ADAPTIVE OPTICS;

ARTICLE; AUTOMATION; CELL MOTION; CELL STRUCTURE; CELLULAR ORGANISM; DROSOPHILA MELANOGASTER; EGG LAYING; EMBRYO DEVELOPMENT; FLUORESCENCE MICROSCOPY; GENE EXPRESSION; IMAGE QUALITY; LIGHT SHEET MICROSCOPY; NONHUMAN; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; ZEBRA FISH; ALGORITHM; ANIMAL; CYTOLOGY; DEVICE FAILURE ANALYSIS; DEVICES; DROSOPHILA; EQUIPMENT DESIGN; FEEDBACK SYSTEM; ILLUMINATION; IMAGE ENHANCEMENT; LASER; LENS; LONGITUDINAL STUDY; NONMAMMALIAN EMBRYO; PROCEDURES; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY;

ALGORITHMS; ANIMALS; DROSOPHILA; EMBRYO, NONMAMMALIAN; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; FEEDBACK; IMAGE ENHANCEMENT; LASERS; LENSES; LIGHTING; LONGITUDINAL STUDIES; MICROSCOPY, FLUORESCENCE; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; ZEBRAFISH;

EID: 85002867359     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.3708     Document Type: Article

References (40)

1. Pantazis, P., Supatto, W. Advances in whole-embryo imaging: a quantitative transition is underway. Nat. Rev. Mol. Cell Biol. 15, 327-339 (2014).
2. Keller, P. J. Imaging morphogenesis: technological advances and biological insights. Science 340, 1234168 (2013).
3. Höckendorf, B., Thumberger, T., Wittbrodt, J. Quantitative analysis of embryogenesis: a perspective for light sheet microscopy. Dev. Cell 23, 1111-1120 (2012).
4. Winter, P. W., Shroff, H. Faster fluorescence microscopy: advances in high speed biological imaging. Curr. Opin. Chem. Biol. 20, 46-53 (2014).
5. Santi, P. A. Light sheet fluorescence microscopy: a review. J. Histochem. Cytochem. 59, 129-138 (2011).
6. Weber, M., Huisken, J. Light sheet microscopy for real-time developmental biology. Curr. Opin. Genet. Dev. 21, 566-572 (2011).
7. Stelzer, E. H. Light-sheet fluorescence microscopy for quantitative biology. Nat. Methods 12, 23-26 (2015).
8. Wu, Y., et al. Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy. Nat. Biotechnol. 31, 1032-1038 (2013).
9. Chen, B. C., et al. Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution. Science 346, 1257998 (2014).
10. Chhetri, R. K., et al. Whole-animal functional and developmental imaging with isotropic spatial resolution. Nat. Methods 12, 1171-1178 (2015).
11. Wu, Y., et al. Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans. Proc. Natl. Acad. Sci. USA 108, 17708-17713 (2011).
12. Ahrens, M. B., Orger, M. B., Robson, D. N., Li, J. M., Keller, P. J. Whole-brain functional imaging at cellular resolution using light-sheet microscopy. Nat. Methods 10, 413-420 (2013).
13. Fahrbach, F. O., Voigt, F. F., Schmid, B., Helmchen, F., Huisken, J. Rapid 3D light-sheet microscopy with a tunable lens. Opt. Express 21, 21010-21026 (2013).
14. Capoulade, J., Wachsmuth, M., Hufnagel, L., Knop, M. Quantitative fluorescence imaging of protein diffusion and interaction in living cells. Nat. Biotechnol. 29, 835-839 (2011).
15. Lemon, W. C., et al. Whole-central nervous system functional imaging in larval Drosophila. Nat. Commun. 6, 7924 (2015).
16. Tomer, R., Khairy, K., Amat, F., Keller, P. J. Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy. Nat. Methods 9, 755-763 (2012).
17. Kaufmann, A., Mickoleit, M., Weber, M., Huisken, J. Multilayer mounting enables long-term imaging of zebrafish development in a light sheet microscope. Development 139, 3242-3247 (2012).
18. Keller, P. J., Schmidt, A. D., Wittbrodt, J., Stelzer, E. H. K. Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy. Science 322, 1065-1069 (2008).
19. Keller, P. J., et al. Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy. Nat. Methods 7, 637-642 (2010).
20. Huisken, J., Swoger, J., Del Bene, F., Wittbrodt, J., Stelzer, E. H. K. Optical sectioning deep inside live embryos by selective plane illumination microscopy. Science 305, 1007-1009 (2004).
21. Wang, K., et al. Rapid adaptive optical recovery of optimal resolution over large volumes. Nat. Methods 11, 625-628 (2014).
22. Wang, C., et al. Multiplexed aberration measurement for deep tissue imaging in vivo. Nat. Methods 11, 1037-1040 (2014).
23. Quirin, S., et al. Calcium imaging of neural circuits with extended depth-of-field light-sheet microscopy. Opt. Lett. 41, 855-858 (2016).
24. Tomer, R., et al. SPED light sheet microscopy: fast mapping of biological system structure and function. Cell 163, 1796-1806 (2015).
25. Turaga, D., Holy, T. E. Image-based calibration of a deformable mirror in wide-field microscopy. Appl. Opt. 49, 2030-2040 (2010).
26. Turaga, D., Holy, T. E. Aberrations and their correction in light-sheet microscopy: a low-dimensional parametrization. Biomed. Opt. Express 4, 1654-1661 (2013).
27. Masson, A., et al. High-resolution in-depth imaging of optically cleared thick samples using an adaptive SPIM. Sci. Rep. 5, 16898 (2015).
28. Bourgenot, C., Saunter, C. D., Taylor, J. M., Girkin, J. M., Love, G. D. 3D adaptive optics in a light sheet microscope. Opt. Express 20, 13252-13261 (2012).
29. Chen, T. W., et al. Ultrasensitive fluorescent proteins for imaging neuronal activity. Nature 499, 295-300 (2013).
30. Keller, P. J., Ahrens, M. B. Visualizing whole-brain activity and development at the single-cell level using light-sheet microscopy. Neuron 85, 462-483 (2015).
31. Scherf, N., Huisken, J. The smart and gentle microscope. Nat. Biotechnol. 33, 815-818 (2015).
32. Truong, T. V., Supatto, W., Koos, D. S., Choi, J. M., Fraser, S. E. Deep and fast live imaging with two-photon scanned light-sheet microscopy. Nat. Methods 8, 757-760 (2011).
33. Palero, J., Santos, S. I., Artigas, D., Loza-Alvarez, P. A simple scanless two-photon fluorescence microscope using selective plane illumination. Opt. Express 18, 8491-8498 (2010).
34. Planchon, T. A., et al. Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination. Nat. Methods 8, 417-423 (2011).
35. Fahrbach, F. O., Simon, P., Rohrbach, A. Microscopy with self-reconstructing beams. Nat. Photonics 4, 780-785 (2010).
36. Keller, P. J. Microtubule Dynamic Instability Analyzed in Three Dimensions Over Time with Selective Plane Illumination Microscopy and Modeling of Yeast Sporulation. Diploma thesis, University of Heidelberg. (2005).
37. Duck, F. A. Physical Properties of Tissue: A Comprehensive Reference Book (Academic Press Inc., San Diego, 1990).
38. Amat, F., et al. Efficient processing and analysis of large-scale light-sheet microscopy data. Nat. Protoc. 10, 1679-1696 (2015).
39. Edelstein, A., Amodaj, N., Hoover, K., Vale, R., Stuurman, N. Computer control of microscopes using ?Manager. Curr. Protoc. Mol. Biol. 92, 14. 20. 1-14. 20. 17 (2010).
40. Pitrone, P. G., et al. OpenSPIM: an open-access light-sheet microscopy platform. Nat. Methods 10, 598-599 (2013).