메뉴 건너뛰기




Volumn 12, Issue 12, 2016, Pages

A novel targeted/untargeted GC-Orbitrap metabolomics methodology applied to Candida albicans and Staphylococcus aureus biofilms

Author keywords

Biofilm; Candida; Metabolomics; Staphylococcus

Indexed keywords

FRUCTOSE; GLUCOSE; PYROGLUTAMIC ACID; SUGAR PHOSPHATE;

EID: 85002187621     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-016-1134-2     Document Type: Article
Times cited : (46)

References (42)
  • 1
    • 0016139741 scopus 로고
    • Accumulation of toxic concentrations of methylglyoxal by wild-type Escherichia coli K-12
    • COI: 1:CAS:528:DyaE2MXhvVKr, PID: 4604054
    • Ackerman, R. S., Cozzarelli, N. R., & Epstein, W. (1974). Accumulation of toxic concentrations of methylglyoxal by wild-type Escherichia coli K-12. Journal of Bacteriology, 119(2), 357–362.
    • (1974) Journal of Bacteriology , vol.119 , Issue.2 , pp. 357-362
    • Ackerman, R.S.1    Cozzarelli, N.R.2    Epstein, W.3
  • 2
    • 0036196019 scopus 로고    scopus 로고
    • Mixed species biofilms of Candida albicans and Staphylococcus epidermidis
    • PID: 11926741
    • Adam, B., Baillie, G. S., & Douglas, L. J. (2002). Mixed species biofilms of Candida albicans and Staphylococcus epidermidis. Journal of Medical Microbiology, 51, 344–349.
    • (2002) Journal of Medical Microbiology , vol.51 , pp. 344-349
    • Adam, B.1    Baillie, G.S.2    Douglas, L.J.3
  • 3
    • 84874501323 scopus 로고    scopus 로고
    • Ansong, C. et al. Molecular BioSystems, 9(1), pp.44–54. Retrieved May 13, 2016 from
    • Ansong, C. et al. (2013). A multi-omic systems approach to elucidating Yersinia virulence mechanisms. Molecular BioSystems, 9(1), pp.44–54. Retrieved May 13, 2016 from http://xlink.rsc.org/?DOI=C2MB25287B.
    • (2013) A multi-omic systems approach to elucidating Yersinia virulence mechanisms.
  • 4
    • 84948028840 scopus 로고
    • Microbial transformation of sterols: Part I. Decomposition of cholesterol by microorganisms
    • COI: 1:CAS:528:DyaE3cXjvF2muw%3D%3D
    • Arima, K., Nagasawa, M., Bae, M., & Tamura, G. (1969). Microbial transformation of sterols: Part I. Decomposition of cholesterol by microorganisms. Agricultural and Biological Chemistry, 33(11), 1636–1643.
    • (1969) Agricultural and Biological Chemistry , vol.33 , Issue.11 , pp. 1636-1643
    • Arima, K.1    Nagasawa, M.2    Bae, M.3    Tamura, G.4
  • 5
    • 0020518529 scopus 로고
    • Effect of strain of Staphylococcus aureus on synergism with Candida albicans resulting in mouse mortality and morbidity
    • COI: 1:STN:280:DyaL2c%2Fgs12lug%3D%3D, PID: 6352497
    • Carlson, E. (1983). Effect of strain of Staphylococcus aureus on synergism with Candida albicans resulting in mouse mortality and morbidity. Infection and Immunity, 42(1), 285–292.
    • (1983) Infection and Immunity , vol.42 , Issue.1 , pp. 285-292
    • Carlson, E.1
  • 6
    • 0022412249 scopus 로고
    • Protection by Candida albicans of Staphylococcus aureus in the establishment of dual infection in mice
    • COI: 1:STN:280:DyaL28%2FlvVSjug%3D%3D, PID: 3905609
    • Carlson, E., & Johnson, G. (1985). Protection by Candida albicans of Staphylococcus aureus in the establishment of dual infection in mice. Infection and immunity, 50(3), 655–659.
    • (1985) Infection and immunity , vol.50 , Issue.3 , pp. 655-659
    • Carlson, E.1    Johnson, G.2
  • 8
    • 84859223223 scopus 로고    scopus 로고
    • IDEOM: an Excel interface for analysis of LC–MS-based metabolomics data
    • COI: 1:CAS:528:DC%2BC38XkvFOrur8%3D, PID: 22308147
    • Creek, D. J., et al. (2012). IDEOM: an Excel interface for analysis of LC–MS-based metabolomics data. Bioinformatics, 28(7), 1048–1049.
    • (2012) Bioinformatics , vol.28 , Issue.7 , pp. 1048-1049
    • Creek, D.J.1
  • 9
    • 79959913950 scopus 로고    scopus 로고
    • Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nature Protocols, 6(7), 1060–1083
    • Dunn, W.B. et al. (2011). Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nature Protocols, 6(7), 1060–1083. Retrieved May 13, 2016 fromhttp://www.nature.com/doifinder/10.1038/nprot.2011.335.
    • (2011) Retrieved May 13, 2016 fromhttp://www.nature.com/doifinder/10.1038/nprot , vol.2011 , pp. 335
    • Dunn, W.B.1
  • 11
    • 0001208835 scopus 로고
    • Francis, N. Journal of Biological Chemistry, 237(3), 778–786
    • Francis, N. (1962). The Enzymatic Synthesis of D-Alanyl-d-alanine. Journal of Biological Chemistry, 237(3), 778–786. file://C:/Users/Karl/Downloads/J.Biol.Chem.-1962-Neuhaus-778-86.pdf.
    • (1962) The Enzymatic Synthesis of D-Alanyl-d-alanine.
  • 12
    • 70349133953 scopus 로고    scopus 로고
    • Candida albicans and Staphylococcus aureus form polymicrobial biofilms: Effects on antimicrobial resistance
    • COI: 1:CAS:528:DC%2BD1MXhtFCjsr3P, PID: 19564370
    • Harriott, M. M., & Noverr, M. C. (2009). Candida albicans and Staphylococcus aureus form polymicrobial biofilms: Effects on antimicrobial resistance. Antimicrobial Agents and Chemotherapy, 53(9), 3914–3922.
    • (2009) Antimicrobial Agents and Chemotherapy , vol.53 , Issue.9 , pp. 3914-3922
    • Harriott, M.M.1    Noverr, M.C.2
  • 13
    • 77956132510 scopus 로고    scopus 로고
    • Ability of Candida albicans mutants to induce Staphylococcus aureus vancomycin resistance during polymicrobial biofilm formation
    • COI: 1:CAS:528:DC%2BC3cXht12ktL%2FP, PID: 20566760
    • Harriott, M. M., & Noverr, M. C. (2010). Ability of Candida albicans mutants to induce Staphylococcus aureus vancomycin resistance during polymicrobial biofilm formation. Antimicrobial Agents and Chemotherapy, 54(9), 3746–3755.
    • (2010) Antimicrobial Agents and Chemotherapy , vol.54 , Issue.9 , pp. 3746-3755
    • Harriott, M.M.1    Noverr, M.C.2
  • 14
    • 0026744648 scopus 로고
    • Two mechanisms for growth inhibition by elevated transport of sugar phosphates in Escherichia coli
    • COI: 1:CAS:528:DyaK3sXjs1Sk, PID: 1479338
    • Kadner, R. J., Murphy, G. P., & Stephens, C. M. (1992). Two mechanisms for growth inhibition by elevated transport of sugar phosphates in Escherichia coli. Journal of General Microbiology, 138(10), 2007–2014.
    • (1992) Journal of General Microbiology , vol.138 , Issue.10 , pp. 2007-2014
    • Kadner, R.J.1    Murphy, G.P.2    Stephens, C.M.3
  • 15
    • 84860378125 scopus 로고    scopus 로고
    • Quantitative proteomics and metabolomics approaches to demonstrate N-acetyl-d-glucosamine inducible amino acid deprivation response as morphological switch in Candida albicans
    • COI: 1:CAS:528:DC%2BC38Xks1yqtrg%3D, PID: 22406769
    • Kamthan, M., et al. (2012). Quantitative proteomics and metabolomics approaches to demonstrate N-acetyl-d-glucosamine inducible amino acid deprivation response as morphological switch in Candida albicans. Fungal Genetics and Biology, 49(5), 369–378.
    • (2012) Fungal Genetics and Biology , vol.49 , Issue.5 , pp. 369-378
    • Kamthan, M.1
  • 17
    • 34247163207 scopus 로고    scopus 로고
    • Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry. BMC bioinformatics, 8, 105. Retrieved May 13
    • Kind, T. & Fiehn, O. (2007). Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry. BMC bioinformatics, 8, 105. Retrieved May 13, 2016 from http://www.ncbi.nlm.nih.gov/pubmed/17389044.
    • (2007) 2016 from
    • Kind, T.1    Fiehn, O.2
  • 19
    • 84883628218 scopus 로고    scopus 로고
    • Cholesterol oxidase Is indispensable in the pathogenesis of Mycobacterium tuberculosis
    • COI: 1:CAS:528:DC%2BC3sXhsVOrtbrJ, PID: 24039915
    • Klink, M., et al. (2013). Cholesterol oxidase Is indispensable in the pathogenesis of Mycobacterium tuberculosis. PLoS ONE, 8(9), e73333.
    • (2013) PLoS ONE , vol.8 , Issue.9
    • Klink, M.1
  • 20
    • 84864826447 scopus 로고    scopus 로고
    • Pyroglutamic acid: throwing light on a lightly studied metabolite
    • COI: 1:CAS:528:DC%2BC38XktFCjs7s%3D
    • Kumar, A., & Bachhawat, A. K. (2012). Pyroglutamic acid: throwing light on a lightly studied metabolite. Current Science, 102(2), 288.
    • (2012) Current Science , vol.102 , Issue.2 , pp. 288
    • Kumar, A.1    Bachhawat, A.K.2
  • 21
    • 79960384696 scopus 로고    scopus 로고
    • Mass spectrometry strategies in metabolomics
    • COI: 1:CAS:528:DC%2BC3MXovFCksbY%3D, PID: 21632543
    • Lei, Z., Huhman, D. V., & Sumner, L. W. (2011). Mass spectrometry strategies in metabolomics. Journal of Biological Chemistry, 286(29), 25435–25442.
    • (2011) Journal of Biological Chemistry , vol.286 , Issue.29 , pp. 25435-25442
    • Lei, Z.1    Huhman, D.V.2    Sumner, L.W.3
  • 22
    • 84865956249 scopus 로고    scopus 로고
    • Liu, C.-H., & Huang, H.-Y. Chemical and Pharmaceutical Bulletin, 60(9), 1118–1124. Retrieved September 26, 2016 from
    • Liu, C.-H., & Huang, H.-Y. (2012). Antimicrobial Activity of Curcumin-Loaded Myristic Acid Microemulsions against Staphylococcus epidermidis. Chemical and Pharmaceutical Bulletin, 60(9), 1118–1124. Retrieved September 26, 2016 from http://japanlinkcenter.org/DN/JST.JSTAGE/cpb/c12-00220?lang=en&from=CrossRef&type=abstract.
    • (2012) Antimicrobial Activity of Curcumin-Loaded Myristic Acid Microemulsions against Staphylococcus epidermidis.
  • 24
    • 33644814149 scopus 로고    scopus 로고
    • Staphylococcus aureus and Streptococcus mutans colonization in patients wearing dental prosthesis
    • Monroy, T. B., et al. (2005). Staphylococcus aureus and Streptococcus mutans colonization in patients wearing dental prosthesis. Medicina Oral, Patologia Oral y Cirugia Bucal, 10(S1), E27–E39.
    • (2005) Medicina Oral, Patologia Oral y Cirugia Bucal , vol.10 , Issue.S1 , pp. E27-E39
    • Monroy, T.B.1
  • 25
    • 85007989238 scopus 로고
    • Microbial transformation of sterols: Part II. Cleavage of sterol side chains by microorganisms
    • COI: 1:CAS:528:DyaE3cXjvF2lsg%3D%3D
    • Nagasawa, M., Bae, M., Tamura, G., & Arima, K. (1969). Microbial transformation of sterols: Part II. Cleavage of sterol side chains by microorganisms. Agricultural and Biological Chemistry, 33(11), 1644–1650.
    • (1969) Agricultural and Biological Chemistry , vol.33 , Issue.11 , pp. 1644-1650
    • Nagasawa, M.1    Bae, M.2    Tamura, G.3    Arima, K.4
  • 26
    • 84900395897 scopus 로고    scopus 로고
    • Impact of Staphylococcus aureus on pathogenesis in polymicrobial infections
    • Nair, N. et al. (2014). Impact of Staphylococcus aureus on pathogenesis in polymicrobial infections. Infection and immunity, 82(6), 2162–2169. http://www.ncbi.nlm.nih.gov/pubmed/24643542.
    • (2014) Infection and immunity , vol.82 , Issue.6 , pp. 2162-2169
    • Nair, N.1
  • 27
    • 84946862860 scopus 로고    scopus 로고
    • Polymicrobial Candida biofilms: friends and foe in the oral cavity. FEMS Yeast Research, 15(7). Retrieved May 13
    • O’Donnell, L.E. et al. (2015). Polymicrobial Candida biofilms: friends and foe in the oral cavity. FEMS Yeast Research, 15(7). Retrieved May 13, 2016 from http://www.ncbi.nlm.nih.gov/pubmed/26298018.
    • (2015) 2016 from
    • O’Donnell, L.E.1
  • 28
    • 34249724445 scopus 로고    scopus 로고
    • Nosocomial fungal infections: epidemiology, diagnosis, and treatment
    • Perlroth, J., Choi, B. & Spellberg, B. (2007). Nosocomial fungal infections: epidemiology, diagnosis, and treatment. Medical Mycology, 45(4), 321–346. http://informahealthcare.com/doi/abs/10.1080/13693780701218689.
    • (2007) Medical Mycology , vol.45 , Issue.4 , pp. 321-346
    • Perlroth, J.1    Choi, B.2    Spellberg, B.3
  • 29
    • 84855656898 scopus 로고    scopus 로고
    • Polymicrobial interactions: impact on pathogenesis and human disease
    • Peters, B.M., Jabra-Rizk, M.A., et al. (2012). Polymicrobial interactions: impact on pathogenesis and human disease. Clinical Microbiology Reviews, 25(1), 193–213. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3255964&tool=pmcentrez&rendertype=abstract.
    • (2012) Clinical Microbiology Reviews , vol.25 , Issue.1 , pp. 193-213
    • Peters, B.M.1    Jabra-Rizk, M.A.2
  • 30
    • 84870367328 scopus 로고    scopus 로고
    • Staphylococcus aureus adherence to Candida albicans hyphae is mediated by the hyphal adhesin Als3p. Microbiology (Reading
    • Peters, B.M., Ovchinnikova, E.S., et al. (2012). Staphylococcus aureus adherence to Candida albicans hyphae is mediated by the hyphal adhesin Als3p. Microbiology (Reading, England), 158(Pt 12), 2975–2986. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=4083660&tool=pmcentrez&rendertype=abstract.
    • (2012) England) , vol.158 , pp. 2975-2986
    • Peters, B.M.1    Ovchinnikova, E.S.2
  • 31
    • 77954654587 scopus 로고    scopus 로고
    • Microbial interactions and differential protein expression in Staphylococcus aureus-Candida albicans dual-species biofilms
    • COI: 1:CAS:528:DC%2BC3cXhtVeju7zL, PID: 20608978
    • Peters, B. M., et al. (2010). Microbial interactions and differential protein expression in Staphylococcus aureus-Candida albicans dual-species biofilms. FEMS Immunology and Medical Microbiology, 59(3), 493–503.
    • (2010) FEMS Immunology and Medical Microbiology , vol.59 , Issue.3 , pp. 493-503
    • Peters, B.M.1
  • 32
    • 77958051444 scopus 로고    scopus 로고
    • Development and characterization of a GC-enabled QLT-orbitrap for high-resolution and high-mass accuracy GC/MS
    • COI: 1:CAS:528:DC%2BC3cXhtFSlsLzP, PID: 20815337
    • Peterson, A. C., et al. (2010). Development and characterization of a GC-enabled QLT-orbitrap for high-resolution and high-mass accuracy GC/MS. Analytical Chemistry, 82(20), 8618–8628.
    • (2010) Analytical Chemistry , vol.82 , Issue.20 , pp. 8618-8628
    • Peterson, A.C.1
  • 34
    • 84923930485 scopus 로고    scopus 로고
    • Extracellular DNA release confers heterogeneity in Candida albicans biofilm formation. BMC Microbiology, 14, 303. Retrieved May 13
    • Rajendran, R. et al. (2014). Extracellular DNA release confers heterogeneity in Candida albicans biofilm formation. BMC Microbiology, 14, 303. Retrieved May 13, 2016 from http://www.ncbi.nlm.nih.gov/pubmed/25476750.
    • (2014) 2016 from
    • Rajendran, R.1
  • 36
    • 70049114998 scopus 로고    scopus 로고
    • Cross-kingdom interactions: Candida albicans and bacteria
    • Shirtliff, M.E., Peters, B.M. & Jabra-Rizk, M.A. (2009). Cross-kingdom interactions: Candida albicans and bacteria. FEMS Microbiology Letters, 299(1), 1–8. http://www.ncbi.nlm.nih.gov/pubmed/19552706.
    • (2009) FEMS Microbiology Letters , vol.299 , Issue.1 , pp. 1-8
    • Shirtliff, M.E.1    Peters, B.M.2    Jabra-Rizk, M.A.3
  • 37
    • 32444446805 scopus 로고    scopus 로고
    • XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
    • COI: 1:CAS:528:DC%2BD28XitVyqtA%3D%3D, PID: 16448051
    • Smith, C. A., et al. (2006). XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Analytical chemistry, 78(3), 779–787.
    • (2006) Analytical chemistry , vol.78 , Issue.3 , pp. 779-787
    • Smith, C.A.1
  • 38
    • 0242569355 scopus 로고    scopus 로고
    • Soga, T. et al. Journal of Proteome Research, 2(5), 488–494. Retrieved May 13, 2016 from
    • Soga, T. et al. (2003). Quantitative Metabolome Analysis Using Capillary Electrophoresis Mass Spectrometry. Journal of Proteome Research, 2(5), 488–494. Retrieved May 13, 2016 from http://pubs.acs.org/doi/abs/10.1021/pr034020m.
    • (2003) Quantitative Metabolome Analysis Using Capillary Electrophoresis Mass Spectrometry.
  • 39
    • 84922080318 scopus 로고    scopus 로고
    • Proposed quantitative and alphanumeric metabolite identification metrics
    • Sumner, L.W. et al. (2014). Proposed quantitative and alphanumeric metabolite identification metrics. Metabolomics, 10(6), 1047–1049. http://link.springer.com/10.1007/s11306-014-0739-6.
    • (2014) Metabolomics , vol.10 , Issue.6 , pp. 1047-1049
    • Sumner, L.W.1
  • 40
    • 84949969398 scopus 로고    scopus 로고
    • Short communication: Lipolytic activity on milk fat by Staphylococcus aureus and Streptococcus agalactiae strains commonly isolated in Swedish dairy herds
    • Vidanarachchi, J.K. et al. (2015). Short communication: Lipolytic activity on milk fat by Staphylococcus aureus and Streptococcus agalactiae strains commonly isolated in Swedish dairy herds. Journal of Dairy Science, 98(12), 8560–8564. http://linkinghub.elsevier.com/retrieve/pii/S0022030215006803.
    • (2015) Journal of Dairy Science , vol.98 , Issue.12 , pp. 8560-8564
    • Vidanarachchi, J.K.1
  • 42
    • 79952217628 scopus 로고    scopus 로고
    • Adventures in Rhodococcus—from steroids to explosivesThis article is based on a presentation by Dr. Lindsay Eltis at the 60th Annual Meeting of the Canadian Society of Microbiologists in Hamilton, Ontario, 14 June 2010
    • Yam, K.C. et al. (2011). Adventures in Rhodococcus—from steroids to explosivesThis article is based on a presentation by Dr. Lindsay Eltis at the 60th Annual Meeting of the Canadian Society of Microbiologists in Hamilton, Ontario, 14 June 2010. Dr. Eltis was the recipi. Canadian Journal of Microbiology, 57(3), 155–168. http://www.nrcresearchpress.com/doi/abs/10.1139/W10-115.
    • (2011) Dr. Eltis was the recipi. Canadian Journal of Microbiology , vol.57 , Issue.3 , pp. 155-168
    • Yam, K.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.