Genome sequences of 28 Bordetella pertussis U.S. outbreak strains dating from 2010 to 2012

Genome Announcements

Volumn 1, Issue 6, 2013, Pages

  Harvill, Eric T ^a   Goodfield, Laura L ^a   Ivanov, Yury ^a   Meyer, Jessica A ^a   Newth, Christopher ^b   Cassiday, Pamela ^c   Tondella, Maria Lucia ^c   Liao, Patty ^b   Zimmerman, Jerry ^b   Meert, Kathleen ^b   Wessel, David ^b   Berger, John ^b   Dean, J Michael ^b,d   Holubkov, Richard ^b,d   Burr, Jeri ^b,d   Liu, Teresa ^b,d   Brinkac, Lauren ^e   Kim, Maria ^e   Losada, Liliana ^e  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

^b NICHD Collaborative Pediatric Critical Care Research Network   (United States)

^c CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^d UNIVERSITY OF UTAH   (United States)

^e J CRAIG VENTER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84999836780     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.01075-13     Document Type: Article

References (4)

1. CDC. 2013. Provisional pertussis surveillance report. MMWRMorb. Mortal. Wkly. Rep. 61:719-732.
2. Chomczynski P, Sacchi N. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:156-159.
3. Miller JR, Delcher AL, Koren S, Venter E, Walenz BP, Brownley A, Johnson J, Li K, Mobarry C, Sutton G. 2008. Aggressive assembly of pyrosequencing reads with mates. Bioinformatics 24:2818-2824.
4. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.