Draft genome sequence of Lactobacillus plantarum strain Lp91, a promising Indian probiotic isolate of human gut origin

Genome Announcements

Volumn 1, Issue 6, 2013, Pages

  Grover, Sunita ^a   Sharma, Vineet K ^b   Mallapa, Rashmi H ^a   Batish, Virender K ^a  

^a NATIONAL DAIRY RESEARCH INSTITUTE   (India)

^b INDIAN INSTITUTE OF SCIENCE EDUCATION AND RESEARCH BHOPAL   (India)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84999652763     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00976-13     Document Type: Article

References (18)

1. de Vries MC, Vaughan EE, Kleerebezem M, de Vos WM. 2006. Lactobacillus plantarum survival, functional and potential probiotic properties in the human intestinal tract. Int. Dairy J. 16:1018-1028.
2. Kleerebezem M, Boekhorst J, Van Kranenburg R, Molenaar D, Kuipers OP, Leer R, Tarchini R, Peters SA, Sandbrink HM, Fiers MW, Stiekema W, Lankhorst RM, Bron PA, Hoffer SM, Groot MN, Kerkhoven R, de Vries M, Ursing B, De Vos WM, Siezen RJ. 2003. Complete genome sequence of Lactobacillus plantarum WCFS1. Proc. Natl. Acad. Sci. U. S. A. 100:1990-1995.
3. Siezen RJ, Francke C, Renckens B, Boekhorst J, Wels M, Kleerebezem M, van Hijum SA. 2012. Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 Genome. J. Bacteriol. 194:195-196.
4. Wang Y, Chen C, Ai L, Zhou F, Zhou Z, Wang L, Zhang H, Chen W, Guo B. 2011. Complete genome sequence of the probiotic Lactobacillus plantarum ST-III. J. Bacteriol. 193:313-314.
5. Zhang ZY, Liu C, Zhu YZ, Wei YX, Tian F, Zhao GP, Guo XK. 2012. Safety assessment of Lactobacillus plantarum JDM1 based on the complete genome. Int. J. Food Microbiol. 153:166-170.
6. Axelsson L, Rud I, Naterstad K, Blom H, Renckens B, Boekhorst J, Kleerebezem M, van Hijum S, Siezen RJ. 2012. Genome sequence of the naturally Plasmid-free Lactobacillus plantarum Strain NC8 (CCUG 61730). J. Bacteriol. 194:2391-2392.
7. Duary RK, Batish VK, Grover S. 2010. Expression of the atpD gene in putative indigenous probiotic Lactobacillus plantarum strains under in vitro acidic conditions using RT-qPCR. Res. Microbiol. 161:399-405.
8. Duary RK, Rajput YS, Batish VK, Grover S. 2011. Assessing the adhesion of putative indigenous probiotic lactobacilli to human colonic epithelial cells. Indian J. Med. Res. 134:664-671.
9. Kumar R, Grover S, Batish VK. 2011. Hypocholesterolaemic effect of dietary inclusion of two putative probiotic bile salt hydrolase-producing Lactobacillus plantarum strains in Sprague-Dawley rats. Br. J. Nutr. 105: 561-573.
10. Kumar R, Grover S, Batish VK. 2011. Molecular identification and typing of putative probiotic indigenous Lactobacillus plantarum strain Lp91 of human origin by specific primed-PCR assays. Probiotics Antimicrob. Proteins 3:186-193.
11. Duary RK, Batish VK, Grover S. 2012. Relative gene expression of bile salt hydrolase and surface proteins in two putative indigenous Lactobacillus plantarum strains under in vitro gut conditions. Mol. Biol. Rep. 39: 2541-2552.
12. Duary RK, Bhausaheb MA, Batish VK, Grover S. 2012. Antiinflammatory and immunomodulatory efficacy of indigenous probiotic Lactobacillus plantarum Lp91 in colitis mouse model. Mol. Biol. Rep. 39: 4765-4775.
13. Kumar R, Grover S, Batish VK. 2012. Bile salt hydrolase (Bsh) activity screening of lactobacilli: in vitro selection of indigenous Lactobacillus strains with potential bile salt hydrolysing and cholesterol-lowering ability. Probiotics Antimicrob. Prot. 4:162-172.
14. Achuthan AA, Duary RK, Mathadil A, Panwar H, Kumar H, Batish VK, Grover S. 2012. Antioxidative potential of lactobacilli isolated from the gut of Indian people. Mol. Biol. Rep. 39:7887-7897.
15. Aparna Sudhakaran AV, Panwar H, Chauhan R, Duary RK, Rathore RK, Batish VK, Grover S. 2013. Modulation of anti-inflammatory response in lipopolysaccharide stimulated human THP-1 cell line and mouse model at gene expression level with indigenous putative probiotic lactobacilli. Genes Nutr. 8:1-12.
16. Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
17. Salzberg SL, Delcher AL, Kasif S, White O. 1998. Microbial gene identification using interpolated Markov models. Nucleic Acids Res. 26: 544-548.
18. Benson DA, Karsch-Mizrachi I, Clark K, Lipman DJ, Ostell J, Sayers EW. 2012. GenBank. Nucleic Acids Res. 40:D48-D53.