Draft genome sequence of Raoultella ornithinolytica TNT, a trinitrotoluene-denitrating and plant growth-promoting strain isolated from explosive-contaminated soil

Genome Announcements

Volumn 2, Issue 3, 2014, Pages

  Thijs, Sofie ^a   Van Hamme, Jonathan ^b   Gkorezis, Panagiotis ^a   Rineau, Francois ^a   Weyens, Nele ^a   Vangronsveld, Jaco ^a  

^a HASSELT UNIVERSITY   (Belgium)

^b THOMPSON RIVERS UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84999277983     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00491-14     Document Type: Article

References (9)

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2. Chevreux B, Wetter T, Suhai S. 1999. Genome sequence assembly using trace signals and additional sequence information, p 45-56. In Computer science and biology. Proceedings of the German Conf. on Bioinformatics, GCB '99. GCB, Hannover, Germany.
3. Rissman AI, Mau B, Biehl BS, Darling AE, Glasner JD, Perna NT. 2009. Reordering contigs of draft genomes using the Mauve Aligner. Bioinformatics 25:2071-2073. http://dx.doi.org/10.1093/bioinformatics/btp356.
4. Angiuoli SV, Gussman A, Klimke W, Cochrane G, Field D, Garrity G, Kodira CD, Kyrpides N, Madupu R, Markowitz V, Tatusova T, Thomson N, White O. 2008. Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. Omics 12:137-141. http://dx.doi.org/10.1089/omi.2008.0017.
5. French CE, Nicklin S, Bruce NC. 1998. Aerobic degradation of 2, 4, 6-trinitrotoluene by Enterobacter cloacae PB2 and by pentaerythritol tetranitrate reductase. Appl. Environ. Microbiol. 64:2864-2868.
6. Williams RE, Rathbone DA, Scrutton NS, Bruce NC. 2004. Biotransformation of explosives by the old yellow enzyme family of flavoproteins. Appl. Environ. Microbiol. 70:3566-3574. http://dx.doi.org/10.1128/AEM.70.6.3566-3574.2004.
7. Wittich RM, Haïdour A, Van Dillewijn P, Ramos JL. 2008. OYE flavoprotein reductases initiate the condensation of TNT-derived intermediates to secondary diarylamines and nitrite. Environ. Sci. Technol. 42:734-739. http://dx.doi.org/10.1021/es071449w.
8. van Dillewijn P, Wittich RM, Caballero A, Ramos JL. 2008. Subfunctionality of hydride transferases of the old yellow enzyme family of flavoproteins of Pseudomonas putida. Appl. Environ. Microbiol. 74:6703-6708. http://dx.doi.org/10.1128/AEM.00386-08.
9. González-Pérez MM, van Dillewijn P, Wittich RM, Ramos JL. 2007. Escherichia coli has multiple enzymes that attack TNT and release nitrogen for growth. Environ. Microbiol. 9:1535-1540. http://dx.doi.org/10.1111/j.1462-2920.2007.01272.x.