Draft genome sequence of Stenotrophomonas maltophilia SeITE02, a gammaproteobacterium isolated from selenite-contaminated mining soil

Genome Announcements

Volumn 2, Issue 3, 2014, Pages

  Bertolini, Cristina ^a   van Aerle, Ronny ^b,c   Lampis, Silvia ^a   Moore, Karen A ^b   Paszkiewicz, Konrad ^b   Butler, Clive S ^b   Vallini, Giovanni ^a   van der Giezen, Mark ^b  

^a UNIVERSITY OF VERONA   (Italy)

^b UNIVERSITY OF EXETER   (United Kingdom)

^c CENTRE FOR ENVIRONMENT   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84999268957     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00331-14     Document Type: Article

References (20)

1. Stolz JF, Basu P, Santini JM, Oremland RS. 2006. Arsenic and selenium in microbial metabolism. Annu. Rev. Microbiol. 60:107-130. http://dx.doi.org/10.1146/annurev.micro.60.080805.142053.
2. Fellowes JW, Pattrick RA, Lloyd JR, Charnock JM, Coker VS, Mosselmans JF, Weng TC, Pearce CI. 2013. Ex situ formation of metal selenide quantum dots using bacterially derived selenide precursors. Nanotechnology 24:145603. http://dx.doi.org/10.1088/0957-4484/24/14/145603.
3. 4 mediate electron transfer during selenate respiration in Thauera selenatis. J. Biol. Chem. 285:18433-18442. http://dx.doi.org/10.1074/jbc.M110.115873.
4. Debieux CM, Dridge EJ, Mueller CM, Splatt P, Paszkiewicz K, Knight I, Florance H, Love J, Titball RW, Lewis RJ, Richardson DJ, Butler CS. 2011. A bacterial process for selenium nanosphere assembly. Proc. Natl. Acad. Sci. U. S. A. 108:13480-13485. http://dx.doi.org/10.1073/pnas.110 5959108.
5. Schröder I, Rech S, Krafft T, Macy JM. 1997. Purification and characterization of the selenate reductase from Thauera selenatis. J. Biol. Chem. 272:23765-23768. http://dx.doi.org/10.1074/jbc.272.38.23765.
6. Ridley H, Watts CA, Richardson DJ, Butler CS. 2006. Resolution of distinct membrane-bound enzymes from Enterobacter cloacae SLD1a-1 that are responsible for selective reduction of nitrate and selenate oxyanions. Appl. Environ. Microbiol. 72:5173-5180. http://dx.doi.org/10.1128 /AEM.00568-06.
7. DeMoll-Decker H, Macy JM. 1993. The periplasmic nitrite reductase of Thauera selenatis may catalyze the reduction of selenite to elemental selenium. Arch. Microbiol. 160:241-247. http://dx.doi.org/10.1007/B F00249131.
8. Kessi J, Hanselmann KW. 2004. Similarities between the abiotic reduction of selenite with glutathione and the dissimilatory reaction mediated by Rhodospirillum rubrum and Escherichia coli. J. Biol. Chem. 279: 50662-50669. http://dx.doi.org/10.1074/jbc.M405887200.
9. Lampis S, Zonaro E, Bertolini C, Bernardi P, Butler CS, Vallini G. 2014. Delayed formation of zero-valent selenium nanoparticles by Bacillus mycoides SeITE01 as a consequence of selenite reduction under aerobic conditions. Microb. Cell Fact. 13:35. http://dx.doi.org/10.1186/1475-2859-1 3-35.
10. Pages D, Rose J, Conrod S, Cuine S, Carrier P, Heulin T, Achouak W. 2008. Heavy metal tolerance in Stenotrophomonas maltophilia. PLoS One 3:e1539. http://dx.doi.org/10.1371/journal.pone.0001539.
11. Ryan RP, Monchy S, Cardinale M, Taghavi S, Crossman L, Avison MB, Berg G, van der Lelie D, Dow JM. 2009. The versatility and adaptation of bacteria from the genus Stenotrophomonas. Nat. Rev. Microbiol. 7:514-525. http://dx.doi.org/10.1038/nrmicro2163.
12. Antonioli P, Lampis S, Chesini I, Vallini G, Rinalducci S, Zolla L, Righetti PG. 2007. Stenotrophomonas maltophilia SeITE02, a new bacterial strain suitable for bioremediation of selenite-contaminated environmental matrices. Appl. Environ. Microbiol. 73:6854-6863. http://dx.doi.org/10.1128/AEM.00957-07.
13. Lohse M, Bolger AM, Nagel A, Fernie AR, Lunn JE, Stitt M, Usadel B. 2012. RobiNA: a user-friendly, integrated software solution for RNA-Seqbased transcriptomics. Nucleic Acids Res. 40:W622-W627. http://dx.doi.org/10.1093/nar/gks540.
14. Tritt A, Eisen JA, Facciotti MT, Darling AE. 2012. An integrated pipeline for de novo assembly of microbial genomes. PLoS One 7:e42304. http://dx.doi.org/10.1371/journal.pone.0042304.
15. Seemann T. 18 March 2014. Prokka: rapid prokaryotic genome annotation. Bioinformatics. http://dx.doi.org/10.1093/bioinformatics/btu153.
16. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75. http://dx.doi.org/10.1186/1471-2164-9-75.
17. Kuroda M, Yamashita M, Miwa E, Imao K, Fujimoto N, Ono H, Nagano K, Sei K, Ike M. 2011. Molecular cloning and characterization of the srdBCA operon, encoding the respiratory selenate reductase complex, from the selenate-reducing bacterium Bacillus selenatarsenatis SF-1. J. Bacteriol. 193:2141-2148. http://dx.doi.org/10.1128/JB.01197-10.
18. Guymer D, Maillard J, Sargent F. 2009. A genetic analysis of in vivo selenate reduction by Salmonella enterica serovar. Typhimurium LT2 and Escherichia coli K-12. Arch. Microbiol. 191:519-528. http://dx.doi.org/10.1007/s00203-009-0478-7.
19. Bébien M, Kirsch J, Méjean V, Verméglio A. 2002. Involvement of a putative molybdenum enzyme in the reduction of selenate by Escherichia coli. Microbiology 148:3865-3872.
20. Hunter WJ. 7 March 2014. Pseudomonas seleniipraecipitans proteins potentially involved in selenite reduction. Curr. Microbiol. http://dx.doi.org /10.1007/s00284-014-0555-2.