Identification of a novel HIV-1 circulating recombinant form (CRF72_BF1) in deep sequencing data from blood donors in southeastern Brazil

Genome Announcements

Volumn 2, Issue 3, 2014, Pages

  Pessôa, Rodrigo ^a   Freitas Carneiro Proietti, Anna Bárbara de ^b   Busch, Michael P ^c   Sanabani, Sabri S ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b Foundation and Center for Hematology and Hemotherapy of Minas Gerais (HEMOMINAS)   (Brazil)

^c BLOOD SYSTEMS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84999122129     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00386-14     Document Type: Article

References (11)

1. Robertson DL, Anderson JP, Bradac JA, Carr JK, Foley B, Funkhouser RK, Gao F, Hahn BH, Kalish ML, Kuiken C, Learn GH, Leitner T, McCutchan F, Osmanov S, Peeters M, Pieniazek D, Salminen M, Sharp PM, Wolinsky S, Korber B. 2000. HIV-1 nomenclature proposal. Science 288:55-56. http://dx.doi.org/10.1126/science.288.5463.55c.
2. Plantier JC, Leoz M, Dickerson JE, De Oliveira F, Cordonnier F, Lemée V, Damond F, Robertson DL, Simon F. 2009. A new human immunodeficiency virus derived from gorillas. Nat. Med. 15:871-872. http://dx.doi.org/10.1038/nm.2016.
3. Carr JK, Salminen MO, Albert J, Sanders-Buell E, Gotte D, Birx DL, McCutchan FE. 1998. Full genome sequences of human immunodeficiency virus type 1 subtypes G and A/G intersubtype recombinants. Virology 247:22-31. http://dx.doi.org/10.1006/viro.1998.9211.
4. Hemelaar J, Gouws E, Ghys PD, Osmanov S, WHO-UNAIDS Network for HIV Isolation and Characterisation. 2011. Global trends in molecular epidemiology of HIV-1 during 2000-2007. AIDS 25:679-689. http://dx.doi.org/10.1097/QAD.0b013e328342ff93.
5. Sanabani S, Neto WK, de Sa Filho DJ, Diaz RS, Munerato P, Janini LM, Sabino EC. 2006. Full-length genome analysis of human immunodeficiency virus type 1 subtype C in Brazil. AIDS Res. Hum. Retroviruses 22:171-176. http://dx.doi.org/10.1089/aid.2006.22.171.
6. Pessoa R, Watanabe JT, Nukui Y, Pereira J, Kasseb J, Penalva de Oliveira AC, Segurado AC, Sanabani SS. 2014. Molecular characterization of human T-cell lymphotropic virus type 1 full and partial genomes by Illumina massively parallel sequencing technology. PLoS One 9:e93374. http://dx.doi.org/10.1371/journal.pone.0093374.
7. Salminen MO, Carr JK, Burke DS, McCutchan FE. 1995. Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res. Hum. Retroviruses 11:1423-1425. http://dx.doi.org/10.1089/aid.1995.11.1423.
8. Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, Novak NG, Ingersoll R, Sheppard HW, Ray SC. 1999. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73:152-160.
9. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML. Syst. Biol. 3 0:59:307-321. http://dx.doi.org/10.1093/sysbio/syq010.
10. Thomson MM, Sierra M, Tanuri A, May S, Casado G, Manjon N, Najera R. 2004. Analysis of near full-length genome sequences of HIV type 1 BF intersubtype recombinant viruses from Brazil reveals their independent origins and their lack of relationship to CRF12_BF. AIDS Res. Hum. Retroviruses 20:1126-1133. http://dx.doi.org/10.1089/aid.2004.20.1126.
11. Sa-Filho D, Kallas EG, Sanabani S, Sabino E, Sucupira MC, Sanchez-Rosa AC, Tescarollo G, Tomiyama H, Bassichetto K, Janini LM, Diaz RS. 2007. Characterization of the full-length human immunodeficiency virus-1 genome from recently infected subjects in Brazil. AIDS Res. Hum. Retroviruses 23:1087-1094. http://dx.doi.org/10.1089/aid.2006.0173.