Draft genome sequence of Rhodobacter sp. strain CACIA 14H1, a heterotrophic bacterium obtained from a nonaxenic culture of a Cyanobium species

Genome Announcements

Volumn 2, Issue 1, 2014, Pages

  Lima, Alex Ranieri Jerônimo ^a,b   Siqueira, Andrei Santos ^a   dos Santos, Bruno Garcia Simões ^a   da Silva, Fábio Daniel Florêncio ^a   Inada, Davi Toshio ^b   Lima, Clayton Pereira ^b   Cardoso, Jedson Ferreira ^b   Vianez Júnior, João Lídio S G ^b   Nunes, Márcio Roberto Teixeira ^b   Gonçalves, Evonnildo Costa ^a,b  

^a FEDERAL UNIVERSITY OF PARÁ   (Brazil)

^b INSTITUTO EVANDRO CHAGAS   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84999029565     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.e01116-13     Document Type: Article

References (8)

1. Rippka R. 1988. Isolation and purification of cyanobacteria. Methods Enzymol. 167:3-27. http://dx.doi.org/10.1016/0076-6879(88)67004-2.
2. Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH. 2013. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nat. Biotechnol. 31:533-538. http://dx.doi.org/10.1038/nbt.2579.
3. Nederbragt AJ, Rounge TB, Kausrud KL, Jakobsen KS. 2010. Identification and quantification of genomic repeats and sample contamination in assemblies of 454 pyrosequencing reads. Sequencing 2010:782465.
4. Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt Ka, Volkmer Ga, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM. 2005. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380. http://dx.doi.org/10.1038/nature03959.
5. Angiuoli SV, Gussman A, Klimke W, Cochrane G, Field D, Garrity G, Kodira CD, Kyrpides N, Madupu R, Markowitz V, Tatusova T, Thomson N, White O. 2008. Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. Omics 12:137-141. http://dx.doi.org/10.1089/omi.2008.0017.
6. Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. 2007 RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108. http://dx.doi.org/10.1093/nar/gkm160.
7. Regier N, Frey B, Converse B, Roden E, Grosse-Honebrink A, Bravo AG, Cosio C. 2012. Effect of Elodea nuttallii roots on bacterial communities and MMHg proportion in a Hg polluted sediment. PLoS One 7:e45565. http://dx.doi.org/10.1371/journal.pone.0045565.
8. Choudhary M, Zanhua X, Fu YX, Kaplan S. 2007. Genome analyses of three strains of Rhodobacter sphaeroides: evidence of rapid evolution of chromosome II. J. Bacteriol. 189:1914-1921. http://dx.doi.org/10.1128/JB.01498-06.