Genome sequence of the basidiomycetous fungus Pseudozyma aphidis DSM70725, an efficient producer of biosurfactant mannosylerythritol lipids

Genome Announcements

Volumn 2, Issue 1, 2014, Pages

  Lorenz, Stefan ^a   Guenther, Michael ^b   Grumaz, Christian ^b   Rupp, Steffen ^a   Zibek, Susanne ^a   Sohn, Kai ^a  

^a FRAUNHOFER INSTITUTE FOR INTERFACIAL ENGINEERING AND BIOTECHNOLOGY IGB   (Germany)

^b UNIVERSITY OF STUTTGART   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84998812229     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.e00053-14     Document Type: Article

References (8)

1. Hewald S, Linne U, Scherer M, Marahiel MA, Kämper J, Bölker M. 2006. Identification of a gene cluster for biosynthesis of mannosylerythritol lipids in the basidiomycetous fungus Ustilago maydis. Appl. Environ. Microbiol. 72:5469-5477. http://dx.doi.org/10.1128/AEM.00506-06.
2. Morita T, Koike H, Koyama Y, Hagiwara H, Ito E, Fukuoka T, Imura T, Machida M, Kitamoto D. 2013. Genome sequence of the basidiomycetous yeast Pseudozyma antarctica t-34, a producer of the glycolipid biosurfactants mannosylerythritol lipids. Genome Announc. 1(2):e00064-13. http://dx.doi.org/10.1128/genomeA.00064-13.
3. Konishi M, Hatada Y, Horiuchi J. 2013. Draft genome sequence of the basidiomycetous yeast-like fungus Pseudozyma hubeiensis SY62, which produces an abundant amount of the biosurfactant mannosylerythritol lipids. Genome Announc. 1(4):e00409-13. http://dx.doi.org/10.1128/genomeA.00409-13.
4. Morita T, Konishi M, Fukuoka T, Imura T, Kitamoto D. 2007. Physio-logical differences in the formation of the glycolipid biosurfactants, mannosylerythritol lipids, between Pseudozyma antarctica and Pseudozyma aphidis. Appl. Microbiol. Biotechnol. 74:307-315. http://dx.doi.org/10.100 7/s00253-006-0672-3.
5. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829. http://dx.doi.org/10.1101/gr.074492.107.
6. Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W. 2011. Scaffolding pre-assembled contigs using sspace. Bioinformatics 27:578-579. http://dx.doi.org/10.1093/bioinformatics/btq683.
7. Stanke M, Keller O, Gunduz I, Hayes A, Waack S, Morgenstern B. 2006. Augustus: ab initio prediction of alternative transcripts. Nucleic Acids Res. 34:W435-W439. http://dx.doi.org/10.1093/nar/gkl200.
8. Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, Banuett F, Kronstad JW, Gold SE, Müller O, Perlin MH, Wösten HA, de Vries R, Ruiz-Herrera J, Reynaga-Peña CG, Snetselaar K, McCann M, Pérez-Martín J, Feldbrügge M, Basse CW, Steinberg G, Ibeas JI, Holloman W, Guzman P, Farman M, Stajich JE, Sentandreu R, González-Prieto JM, Kennell JC, Molina L, Schirawski J, Mendoza-Mendoza A, Greilinger D, Münch K, Rössel N, Scherer M, Vranes M, Ladendorf O, Vincon V, Fuchs U, Sandrock B, Meng S, Ho EC, Cahill MJ, Boyce KJ, Klose J, Klosterman SJ, Deelstra HJ, Ortiz-Castellanos L, Li W, et al. 2006. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature 444:97-101. http://dx.doi.org/10.1038/nature05248.