Genome sequence of the bacterium Bifidobacterium longum strain CMCC P0001, a probiotic strain used for treating gastrointestinal disease

Genome Announcements

Volumn 1, Issue 5, 2013, Pages

  Yu, Hongjing ^a   Liu, Lu ^a   Chang, Zhen ^a   Wang, Shasha ^a   Wen, Bin ^a   Yin, Peijun ^a   Liu, Datao ^a   Chen, Bei ^a   Zhang, Jundong ^a  

^a Research and Development Center of Shanghai Sine Pharmaceutical Co   (China)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84998579440     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.e00716-13     Document Type: Article

References (11)

1. Zhao HM, Huang XY, Zuo ZQ, Pan QH, Ao MY, Zhou F, Liu HN, Liu ZY, Liu DY. 2013. Probiotics increase T regulatory cells and reduce severity of experimental colitis in mice. World J. Gastroenterol. 19:742-749. doi:10.3748/wjg.v19.i5.742.
2. Cui HH, Chen CL, Wang JD, Yang YJ, Cun Y, Wu JB, Liu YH, Dan HL, Jian YT, Chen XQ. 2004. Effects of probiotic on intestinal mucosa of patients with ulcerative colitis. World J. Gastroenterol. 10:1521-1525.
3. Guarner F, Malagelada JR. 2003. Gut flora in health and disease. Lancet 361:512-519.
4. Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, Li S, Yang H, Wang J, Wang J. 2010. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20:265-272.
5. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829. doi:10.1101/gr.074492.107.
6. Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679. doi:10.1093/bioinformatics/btm009.
7. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402. doi: 10.1093/nar/25.17.3389.
8. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
9. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410. doi:10.1016/S0022-283 6(05)80360-2.
10. Ivanov D, Emonet C, Foata F, Affolter M, Delley M, Fisseha M, Blum-Sperisen S, Kochhar S, Arigoni F. 2006. A serpin from the gut bacterium Bifidobacterium longum inhibits eukaryotic elastase-like serine proteases. J. Biol. Chem. 281:17246-17252. doi:10.1074/jbc.M601 678200.
11. Schell MA, Karmirantzou M, Snel B, Vilanova D, Berger B, Pessi G, Zwahlen MC, Desiere F, Bork P, Delley M, Pridmore RD, Arigoni F. 2002. The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc. Natl. Acad. Sci. U. S. A. 99:14422-14427. doi:10.1073/pnas.212527599.