Draft genome sequence of the Antarctic psychrophilic bacterium Pseudomonas syringae strain Lz4W

Genome Announcements

Volumn 1, Issue 3, 2013, Pages

  Pandiyan, Apuratha ^a   Ray, Malay K ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84997770331     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00377-13     Document Type: Article

References (20)

1. Wynn-Williams DD. 1990. Ecological aspects of Antarctic microbiology. Adv. Microbiol. 11:71-146.
2. Franzmann PD, Dobson SJ. 1993. The phylogeny of bacteria from a modern Antarctic refuge. Antarct. Sci. 5:267-270.
3. Ray MK, Kumar GS, Janiyani K, Kannan K, Pratik J, Basu MK, Shivaji S. 1998. Adaptation to low temperature and regulation of gene expression in Antarctic psychrotrophic bacteria. J. Biosci. 23:423-435.
4. Ray MK. 2006. Cold-stress response of low temperature adapted bacteria, p 1-23. In Sreedhar AS, Srinivas UK (ed), Stress response: a molecular biology approach. Research Signpost, Trivandrum, India.
5. Sahu B, Ray MK. 2008. Auxotrophy in natural isolate: minimal requirements for growth of the Antarctic psychrotrophic bacterium Pseudomonas syringae Lz4W. J. Basic Microbiol. 48:38-47.
6. Shivaji S, Shyamala Rao N, Saisree L, Sheth V, Reddy GSN, Bhargava PM. 1989. Isolation and identification of Pseudomonas species from Schirmacher Oasis, Antarctica. Appl. Environ. Microbiol. 55:767-771.
7. Ray MK, Kumar GS, Shivaji S. 1994. Phosphorylation of lipopolysaccharides in the Antarctic psychrotroph Pseudomonas syringae: a possible role in temperature adaptation. J. Bacteriol. 176:4243-4249.
8. Kumar GS, Jagannadham MV, Ray MK. 2002. Low-temperatureinduced changes in composition and fluidity of lipopolysaccharides in the Antarctic psychrotrophic bacterium Pseudomonas syringae. J. Bacteriol. 184:6746-6749.
9. Regha K, Satapathy AK, Ray MK. 2005. RecD plays an essential function during growth at low temperature in the Antarctic bacterium Pseudomonas syringae Lz4W. Genetics 170:1473-1484.
10. Satapathy AK, Pavankumar TL, Bhattacharjya S, Sankaranarayanan R, Ray MK. 2008. ATPase activity of RecD is essential for growth of the Antarctic Pseudomonas syringae Lz4W at low temperature. FEBS J. 275: 1835-1851.
11. Pavankumar TL, Sinha AK, Ray MK. 2010. All three subunits of RecBCD enzyme are essential for DNA repair and low-temperature growth in the Antarctic Pseudomonas syringae Lz4W. PLoS One 5:e9412.
12. Uma S, Jadhav RS, Kumar GS, Shivaji S, Ray MK. 1999. A RNA polymerase with transcriptional activity at 0°C from the Antarctic bacterium Pseudomonas syringae. FEBS Lett. 453:313-317.
13. Janiyani KL, Ray MK. 2002. Cloning, sequencing, and expression of the cold-inducible hutU gene from the Antarctic psychrotrophic bacterium Pseudomonas syringae. Appl. Environ. Microbiol. 68:1-10.
14. Purusharth RI, Klein F, Sulthana S, Jäger S, Jagannadham MV, Evguenieva-Hackenberg E, Ray MK, Klug G. 2005. Exoribonuclease R interacts with endoribonuclease E and an RNA helicase in the psychrotrophic bacterium Pseudomonas syringae Lz4W. J. Biol. Chem. 280: 14572-14578.
15. Purusharth RI, Madhuri B, Ray MK. 2007. Exoribonuclease R in Pseudomonas syringae is essential for growth at low temperature and plays a novel role in the 3=end processing of 16 and 5 S ribosomal RNA. J. Biol. Chem. 282:16267-16277.
16. Sulthana S, Rajyaguru PI, Mittal P, Ray MK. 2011. rnr gene from the Antarctic bacterium Pseudomonas syringae Lz4W, encoding a pychrophilic RNase R. Appl. Environ. Microbiol. 77:7896-7904.
17. Singh AK, Pindi PK, Dube S, Sundareswaran VS, Shivaji S. 2009. Importance of trmE for growth of the psychrophile Pseudomonas syringae at low temperatures. Appl. Environ. Microbiol. 75:4419-4426.
18. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
19. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75.
20. Pruitt KD, Tatusova T, Klimke W, Maglott DR. 2009. NCBI reference sequences: current status, policy and new initiatives. Nucleic Acids Res. 37:D32-D36.