Draft genome sequence of Thermotoga maritima A7A reconstructed from metagenomic sequencing analysis of a hydrocarbon reservoir in the Bass Strait, Australia

Genome Announcements

Volumn 1, Issue 5, 2013, Pages

  Sutcliffe, Brodie ^a   Midgley, David J ^a   Rosewarne, Carly P ^a   Greenfield, Paul ^a   Li, Dongmei ^a  

^a CSIRO   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84997703649     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.e00688-13     Document Type: Article

References (10)

1. Magot M, Ollivier B, Patel BK. 2000. Microbiology of petroleum reservoirs. Antonie Van Leeuwenhoek 77:103-116.
2. Dick GJ, Andersson AF, Baker BJ, Simmons SL, Thomas BC, Yelton AP, Banfield JF. 2009. Community-wide analysis of microbial genome sequence signatures. Genome Biol. 10:R85. doi:10.1186/gb-2009-10-8-r85.
3. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
4. Swithers KS, Dipippo JL, Bruce DC, Detter C, Tapia R, Han S, Saunders E, Goodwin LA, Han J, Woyke T, Pitluck S, Pennacchio L, Nolan M, Mikhailova N, Lykidis A, Land ML, Brettin T, Stetter KO, Nelson KE, Gogarten JP, Noll KM. 2011. Genome sequence of Thermotoga sp. strain RQ2, a hyperthermophilic bacterium isolated from a geothermally heated region of the seafloor near Ribeira Quente, the Azores. J. Bacteriol. 193: 5869-5870.
5. Markowitz VM, Chen I-MA, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Jacob B, Huang J, Williams P, Huntemann M, Anderson I, Mavromatis K, Ivanova NN, Kyrpides NC. 2012. IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res. 40(Database issue):D115-D122. doi:10.1093/nar/gkr1044.
6. Le Fourn C, Fardeau ML, Ollivier B, Lojou E, Dolla A. 2008. The hyperthermophilic anaerobe Thermotoga maritima is able to cope with limited amount of oxygen: insights into its defence strategies. Environ. Microbiol. 10:1877-1887.
7. Chhabra SR, Shockley KR, Conners SB, Scott KL, Wolfinger RD, Kelly RM. 2003. Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima. J. Mol. Biochem. 278:7540-7552.
8. Frock AD, Gray SR, Kelly RM. 2012. Hyperthermophilic Thermotoga species differ with respect to specific carbohydrate transporters and glycoside hydrolases. Appl. Environ. Microbiol. 78:1978-1986.
9. Yin Y, Mao X, Yang JC, Chen X, Mao F, Xu Y. 2012. dbCAN: a web resource for automated carbohydrate-active enzyme annotation. Nucleic Acids Res. 40:W445-W451. doi:10.1093/nar/gks479.
10. Li D, Greenfield P, Rosewarne CP, Midgley DJ. 2013. Draft genome sequence of Thermoanaerobacter sp. strain A7A reconstructed from a metagenome obtained from a high-temperature hydrocarbon reservoir in the Bass Strait, Australia. Genome Announc. 1(5):e00701-13. doi:10.1128/genomeA.00701-13.