Draft genome sequence of the phyllosphere model bacterium Pantoea agglomerans 299R

Genome Announcements

Volumn 1, Issue 1, 2013, Pages

  Remus Emsermann, Mitja N P ^a,c   Kim, Eun Bae ^b   Marco, Maria L ^b   Tecon, Robin ^a,b   Leveau, Johan H J ^a,b  

^a NETHERLANDS INSTITUTE OF ECOLOGY NIOO KNAW   (Netherlands)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c ETH ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84995967857     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00036-13     Document Type: Article

References (20)

1. Meyer KM, Leveau JHJ. 2012. Microbiology of the phyllosphere: a playground for testing ecological concepts. Oecologia 168:621-629.
2. Vorholt JA. 2012. Microbial life in the phyllosphere. Nat. Rev. Microbiol. 10:828-840.
3. Newton AC, Gravouil C, Fountaine JM. 2010. Managing the ecology of foliar pathogens: ecological tolerance in crops. Ann. Appl. Biol. 157: 343-359.
4. Brandl MT. 2006. Fitness of human enteric pathogens on plants and implications for food safety. Annu. Rev. Phytopathol. 44:367-392.
5. Morris CE, Sands DC, Bardin M, Jaenicke R, Vogel B, Leyrponas C, Ariya PA, Psenner R. 2011. Microbiology and atmospheric processes: research challenges concerning the impact of airborne micro-organisms on the atmosphere and climate. Biogeosciences 8:17-25.
6. Leveau JHJ. 2006. Microbial communities in the phyllosphere, p. 334-367. In Riederer M, Müller C (ed), Annual plant reviews, vol 23. Biology of the plant cuticle. Blackwell Publishing, Oxford, United Kingdom.
7. Brandl M, Clark EM, Lindow SE. 1996. Characterization of the indole-3-acetic acid (IAA) biosynthetic pathway in an epiphytic strain of Erwinia herbicola and IAA production in vitro. Can. J. Microbiol. 42:586-592.
8. Brandl MT, Lindow SE. 1998. Contribution of indole-3-acetic acid production to the epiphytic fitness of Erwinia herbicola. Appl. Environ. Microbiol. 64:3256-3263.
9. Monier JM, Lindow SE. 2005. Aggregates of resident bacteria facilitate survival of immigrant bacteria on leaf surfaces. Microb. Ecol. 49:343-352.
10. Tecon R, Leveau JHJ. 2012. The mechanics of bacterial cluster formation on plant leaf surfaces as revealed by bioreporter technology. Environ. Microbiol. 14:1325-1332.
11. Monier J-M, Lindow SE. 2005. Spatial organization of dual-species bacterial aggregates on leaf surfaces. Appl. Environ. Microbiol. 71: 5484-5493.
12. Wilson M, Lindow SE. 1994. Coexistence among epiphytic bacterial populations mediated through nutritional resource partitioning. Appl. Environ. Microbiol. 60:4468-4477.
13. Brandl MT, Quinones B, Lindow SE. 2001. Heterogeneous transcription of an indoleacetic acid biosynthetic gene in Erwinia herbicola on plant surfaces. Proc. Natl. Acad. Sci. U. S. A. 98:3454-3459.
14. Leveau JHJ, Lindow SE. 2001. Appetite of an epiphyte: quantitative monitoring of bacterial sugar consumption in the phyllosphere. Proc. Natl. Acad. Sci. U. S. A. 98:3446-3453.
15. Remus-Emsermann MNP, Leveau JHJ. 2010. Linking environmental heterogeneity and reproductive success at single-cell resolution. ISME J. 4:215-222.
16. Remus-Emsermann MNP, Tecon R, Kowalchuk GA, Leveau JHJ. 2012. Variation in local carrying capacity and the individual fate of bacterial colonizers in the phyllosphere. ISME J. 6:756-765.
17. Boisvert S, Laviolette F, Corbeil J. 2010. Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies. J. Comput. Biol. 17:1519-1533.
18. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75.
19. De Maayer P, Chan W-Y, Blom J, Venter SN, Duffy B, Smits THM, Coutinho TA. 2012. The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification. BMC Genomics 13:625.
20. Smits THM, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B. 2011. Metabolic versatility and antibacterial metabolite biosynthesis are distinguishing genomic features of the fire blight antagonist Pantoea vagans C9-1. PLoS One 6:e22247. doi: 10.1371/journal.pone.0022247.