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1
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84876472618
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Recent advances in biocuration: Meeting report from the Fifth International Biocuration Conference
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bas036
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Gaudet P, Arighi C, Bastian F, Bateman A, Blake JA, Cherry MJ, D’Eustachio P, Finn R, Giglio M, Hirschman L, Kania R, Klimke W, Martin MJ, Karsch-Mizrachi I, Munoz-Torres M, Natale D, O’Donovan C, Ouellette F, Pruitt KD, Robinson-Rechavi M, Sansone SA, Schofield P, Sutton G, Van Auken K, Vasudevan S, Wu C, Young J, Mazumder R (2012) Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference. Database: bas036. doi: 10.1093/database/bas036
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(2012)
Database
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Gaudet, P.1
Arighi, C.2
Bastian, F.3
Bateman, A.4
Blake, J.A.5
Cherry, M.J.6
D’Eustachio, P.7
Finn, R.8
Giglio, M.9
Hirschman, L.10
Kania, R.11
Klimke, W.12
Martin, M.J.13
Karsch-Mizrachi, I.14
Munoz-Torres, M.15
Natale, D.16
O’Donovan, C.17
Ouellette, F.18
Pruitt, K.D.19
Robinson-Rechavi, M.20
Sansone, S.A.21
Schofield, P.22
Sutton, G.23
Van Auken, K.24
Vasudevan, S.25
Wu, C.26
Young, J.27
Mazumder, R.28
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2
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84862266214
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Database: bar059
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Burge S, Attwood TK, Bateman A, Berardini TZ, Cherry M, O’Donovan C, Xenarios L, Gaudet P (2012) Biocurators and biocuration: surveying the 21st century challenges. Database: bar059. doi: 10.1093/database/bar059
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Biocurators and biocuration: Surveying the 21st century challenges
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Burge, S.1
Attwood, T.K.2
Bateman, A.3
Berardini, T.Z.4
Cherry, M.5
O’Donovan, C.6
Xenarios, L.7
Gaudet, P.8
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4
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84994523248
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Best practices in manual annotation with the gene ontology
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Dessimoz C, Škunca N (eds), Humana Press. Chapter 4
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Poux S, Gaudet P (2016) Best practices in manual annotation with the gene ontology. In: Dessimoz C, Škunca N (eds) The gene ontology handbook. Methods in molecular biology, vol 1446. Humana Press. Chapter 4
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Poux, S.1
Gaudet, P.2
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5
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84879330505
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Arighi CN, Carterette B, Cohen KB, Krallinger M, Wilbur WJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jimenez S, Roberts P, Matthews L, Becker K, Drabkin H, Bello S, Licata L, Chatr-aryamontri A, Schaeffer ML, Park J, Haendel M, Van Auken K, Li Y, Chan J, Muller HM, Cui H, Balhoff JP, Chi-Yang Wu J, Lu Z, Wei CH, Tudor CO, Raja K, Subramani S, Natarajan J, Cejuela JM, Dubey P, Wu C (2013) An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database: bas056. doi: 10.1093/ database/bas056
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An overview of the BioCreative 2012 Workshop Track III: Interactive text mining task
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Arighi, C.N.1
Carterette, B.2
Cohen, K.B.3
Krallinger, M.4
Wilbur, W.J.5
Fey, P.6
Dodson, R.7
Cooper, L.8
Van Slyke, C.E.9
Dahdul, W.10
Mabee, P.11
Li, D.12
Harris, B.13
Gillespie, M.14
Jimenez, S.15
Roberts, P.16
Matthews, L.17
Becker, K.18
Drabkin, H.19
Bello, S.20
Licata, L.21
Chatr-aryamontri, A.22
Schaeffer, M.L.23
Park, J.24
Haendel, M.25
Van Auken, K.26
Li, Y.27
Chan, J.28
Muller, H.M.29
Cui, H.30
Balhoff, J.P.31
Chi-Yang Wu, J.32
Lu, Z.33
Wei, C.H.34
Tudor, C.O.35
Raja, K.36
Subramani, S.37
Natarajan, J.38
Cejuela, J.M.39
Dubey, P.40
Wu, C.41
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6
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51049121625
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Text mining for biology--the way forward: Opinions from leading scientists
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Altman RB, Bergman CM, Blake J, Blaschke C, Cohen A, Gannon F, Grivell L, Hahn U, Hersh W, Hirschman L, Jensen LJ, Krallinger M, Mons B, O’Donoghue SI, Peitsch MC, Rebholz-Schuhmann D, Shatkay H, Valencia A (2008) Text mining for biology--the way forward: opinions from leading scientists. Genome Biol 9(Suppl 2): S7. doi: 10.1186/ gb-2008-9-s2-s7
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Mons, B.13
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7
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84994509507
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Computational methods for annotation transfers from sequence
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Cozzetto, D.1
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Ontology (Science)
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Smith, B.1
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11
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84987680729
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Chibucos MC, Mungall CJ, Balakrishnan R, Christie KR, Huntley RP, White O, Blake JA, Lewis SE, Giglio M (2014) Standardized description of scientific evidence using the Evidence Ontology (ECO). Database: bau075. doi: 10.1093/database/bau075
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Chibucos, M.C.1
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0034069495
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Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25(1): 25-29. doi: 10.1038/75556
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84994493506
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Primer on the gene ontology
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Dessimoz C, Škunca N (eds), Humana Press. Chapter 3
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Gaudet P, Škunca N, Hu JC, Dessimoz C (2016) Primer on the gene ontology. In: Dessimoz C, Škunca N (eds) The gene ontology handbook. Methods in molecular biology, vol 1446. Humana Press. Chapter 3
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The FlyBase database of the Drosophila genome projects and community literature
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CollecTF: A database of experimentally validated transcription factorbinding sites in Bacteria
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Database: bav043
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Bastian FB, Chibucos MC, Gaudet P, Giglio M, Holliday GL, Huang H, Lewis SE, Niknejad A, Orchard S, Poux S, Skunca N, Robinson-Rechavi M (2015) The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations. Database: bav043. doi: 10.1093/database/bav043
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The Confidence Information Ontology: A step towards a standard for asserting confidence in annotations
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Bastian, F.B.1
Chibucos, M.C.2
Gaudet, P.3
Giglio, M.4
Holliday, G.L.5
Huang, H.6
Lewis, S.E.7
Niknejad, A.8
Orchard, S.9
Poux, S.10
Skunca, N.11
Robinson-Rechavi, M.12
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