A retrospective study detects a novel variant of porcine epidemic diarrhea virus in England in archived material from the year 2000

PeerJ

Volumn 2016, Issue 10, 2016, Pages

  Steinbach, Falko ^a   Dastjerdi, Akbar ^a   Peake, Julie ^a   Anna La Rocca, S ^a   Tobin, Frank P ^b   Frossard, Jean Pierre ^a   Williamson, Susanna ^a  

^a VETERINARY LABORATORIES AGENCY   (United Kingdom)

^b Holmefield Farm Services Ltd   (United Kingdom)

Author keywords

Diarrhea; England; PEDV; Phylogeny; Pig; Variant

Indexed keywords

ENGLAND; HUMAN; NONHUMAN; PHYLOGENY; PIG; PORCINE EPIDEMIC DIARRHEA VIRUS; RETROSPECTIVE STUDY;

EID: 84994415917     PISSN: None     EISSN: 21678359     Source Type: Journal    
DOI: 10.7717/peerj.2564     Document Type: Article

References (15)

1. Boniotti MB, Papetti A, Lavazza A, Alborali G, Sozzi E, Chiapponi C, Faccini S, Bonilauri P, Cordioli P, Marthaler D. 2016. Porcine epidemic diarrhea virus and discovery of a recombinant swine enteric coronavirus, Italy. Emerging Infectious Diseases 22:83-87 DOI 10.3201/eid2201.150544.
2. Dastjerdi A, Carr J, Ellis RJ, Steinbach F, Williamson S. 2015. Porcine epidemic diarrhea Virus among farmed pigs, Ukraine. Emerging Infectious Diseases 21:2235-2237 DOI 10.3201/eid2112.150272.
3. Ducatelle R, Coussement W, Pensaert MB, Debouck P, Hoorens J. 1981. In vivo morphogenesis of a new porcine enteric coronavirus, CV 777. Archives of Virology 68:35-44 DOI 10.1007/BF01315165.
4. European Food Safety Authority. 2016. Collection and review of updated scientific epidemiological data on porcine epidemic diarrhea. EFSA Journal 14(2):4375 DOI 10.2903/j.efsa.2016.4375.
5. Hanke D, Jenckel M, Petrov A, Ritzmann M, Stadler J, Akimkin V, Blome S, Pohlmann A, Schirrmeier H, Beer M, Höper D. 2015. Comparison of porcine epidemic diarrhea viruses from Germany and the United States, 2014. Emerging Infectious Diseases 21(3):493-496 DOI 10.3201/eid2103.141165.
6. Huang YW, Dickerman AW, Piñneyro P, Li L, Fang L, Kiehne R, Opriessnig T, Meng XJ. 2013. Origin, evolution, and genotyping of emergent porcine epidemic diarrhea virus strains in the United States. mBio 4(5):e00737-13 DOI 10.1128/mBio.00737-13.
7. Kocherhans R, Bridgen A, Ackermann M, Tobler KG. 2001. Completion of the porcine epidemic diarrhea coronavirus (PEDV) genome sequence. Virus Genes 23(2):137-144 DOI 10.1023/A:1011831902219.
8. Miller JR, Koren S, Sutton G. 2010. Assembly algorithms for next-generation sequencing data. Genomics 95(6):315-327 DOI 10.1016/j.ygeno.2010.03.001.
9. Pensaert MB, De Bouck P. 1978. A new coronavirus-like particle associated with diarrhea in swine. Archives of Virology 58(3):243-247 DOI 10.1007/BF01317606.
10. Stevenson GW, Hoang H, Schwartz KJ, Burrough ER, Sun D, Madson D, Cooper VL, Pillatzki A, Gauger P, Schmitt BJ, Koster LG, Killian ML, Yoon KJ. 2013. Emergence of Porcine epidemic diarrhea virus in the United States: clinical signs, lesions, and viral genomic sequences. Journal of Veterinary Diagnostic Investigation 25(5):649-654 DOI 10.1177/1040638713501675.
11. Sun RQ, Cai RJ, Chen YQ, Liang P, Chen D, Song C. 2012. Outbreak of porcine epidemic diarrhea in suckling piglets, China. Emerging Infectious Diseases 18(1):161-163 DOI 10.3201/eid1801.111259.
12. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30:2725-2729 DOI 10.1093/molbev/mst197.
13. Wang L, Byrum B, Zhang Y. 2014. New variant of porcine epidemic diarrhea virus, United States. Emerging Infectious Diseases 20(5):917-919 DOI 10.3201/eid2005.140195.
14. Williamson S, Strugnell B, Thomson J, Webster G, McOrist S, Clarke H, Armstrong D. 2013. Emergence of porcine epidemic diarrhoea in pigs in the USA. Veterinary Record 173:146-148.
15. Wood EN. 1977. An apparently new syndrome of porcine epidemic diarrhea. Veterinary Record 100:243-244 DOI 10.1136/vr.100.12.243.