메뉴 건너뛰기




Volumn 7, Issue SEP, 2016, Pages

Aligning the measurement of microbial diversity with macroecological theory

Author keywords

Boreal forest; Niche conservatism; OTU richness; Permafrost; Rarefaction; Soil; Species energy theory; Species richness

Indexed keywords

ATTENTION; DATA ANALYSIS; DRIVER; ECOLOGY; HUMAN; MICROBIAL DIVERSITY; PERMAFROST; SAMPLING; SOIL; SPECIES RICHNESS; TAIGA;

EID: 84994059786     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2016.01487     Document Type: Article
Times cited : (13)

References (30)
  • 1
    • 84858862141 scopus 로고    scopus 로고
    • The energy-diversity relationship of complex bacterial communities in Arctic deep-sea sediments
    • Bienhold, C., Boetius, A., and Ramette, A. (2012). The energy-diversity relationship of complex bacterial communities in Arctic deep-sea sediments. ISME J. 6, 724-732. doi: 10.1038/ismej.2011.140
    • (2012) ISME J , vol.6 , pp. 724-732
    • Bienhold, C.1    Boetius, A.2    Ramette, A.3
  • 2
    • 78349260124 scopus 로고    scopus 로고
    • Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes
    • Chu, H., Fierer, N., Lauber, C. L., Caporaso, J. G., Knight, R., and Grogan, P. (2010). Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes. Environ. Microbiol. 12, 2998-3006. doi: 10.1111/j.1462-2920.2010.02277.x
    • (2010) Environ. Microbiol , vol.12 , pp. 2998-3006
    • Chu, H.1    Fierer, N.2    Lauber, C.L.3    Caporaso, J.G.4    Knight, R.5    Grogan, P.6
  • 3
    • 84875518282 scopus 로고    scopus 로고
    • Opposing mechanisms drive richness patterns of core and transient bird species
    • Coyle, J. R., Hurlbert, A. H., and White, E. P. (2013). Opposing mechanisms drive richness patterns of core and transient bird species. Am. Nat. 181, E83-E90. doi: 10.1086/669903
    • (2013) Am. Nat , vol.181 , pp. E83-E90
    • Coyle, J.R.1    Hurlbert, A.H.2    White, E.P.3
  • 4
    • 9944219639 scopus 로고    scopus 로고
    • Predictions and tests of climate-based hypotheses of broad-scale variation in taxonomic richness
    • Currie, D. J., Mittelbach, G. G., Cornell, H. V., Field, R., Guegan, J. F., Hawkins, B. A., et al. (2004). Predictions and tests of climate-based hypotheses of broad-scale variation in taxonomic richness. Ecol. Lett. 7, 1121-1134. doi: 10.1111/j.1461-0248.2004.00671.x
    • (2004) Ecol. Lett , vol.7 , pp. 1121-1134
    • Currie, D.J.1    Mittelbach, G.G.2    Cornell, H.V.3    Field, R.4    Guegan, J.F.5    Hawkins, B.A.6
  • 5
    • 31444447130 scopus 로고    scopus 로고
    • The diversity and biogeography of soil bacterial communities
    • Fierer, N., and Jackson, R. B. (2006). The diversity and biogeography of soil bacterial communities. Proc. Natl. Acad. Sci. U.S.A. 103, 626-631. doi: 10.1073/pnas.0507535103
    • (2006) Proc. Natl. Acad. Sci. U.S.A , vol.103 , pp. 626-631
    • Fierer, N.1    Jackson, R.B.2
  • 6
    • 79955673720 scopus 로고    scopus 로고
    • Microbes do not follow the elevational diversity patterns of plants and animals
    • Fierer, N., McCain, C. M., Meir, P., Zimmermann, M., Rapp, J. M., Silman, M. R., et al. (2011). Microbes do not follow the elevational diversity patterns of plants and animals. Ecology 92, 797-804. doi: 10.1890/10-1170.1
    • (2011) Ecology , vol.92 , pp. 797-804
    • Fierer, N.1    McCain, C.M.2    Meir, P.3    Zimmermann, M.4    Rapp, J.M.5    Silman, M.R.6
  • 7
    • 84862499239 scopus 로고    scopus 로고
    • Beyond biogeographic patterns: processes shaping the microbial landscape
    • Hanson, C. A., Fuhrman, J. A., Horner-Devine, M. C., and Martiny, J. B. H. (2012). Beyond biogeographic patterns: processes shaping the microbial landscape. Nat. Rev. Microbiol. 10, 497-506. doi: 10.1038/nrmicro2795
    • (2012) Nat. Rev. Microbiol , vol.10 , pp. 497-506
    • Hanson, C.A.1    Fuhrman, J.A.2    Horner-Devine, M.C.3    Martiny, J.B.H.4
  • 8
    • 3843074126 scopus 로고    scopus 로고
    • Species-energy relationships and habitat complexity in bird communities
    • Hurlbert, A. H. (2004). Species-energy relationships and habitat complexity in bird communities. Ecol. Lett. 7, 714-720. doi: 10.1111/j.1461-0248.2004.00630.x
    • (2004) Ecol. Lett , vol.7 , pp. 714-720
    • Hurlbert, A.H.1
  • 9
    • 77955624882 scopus 로고    scopus 로고
    • More than "more individuals": the nonequivalence of area and energy in the scaling of species richness
    • Hurlbert, A. H., and Jetz, W. (2010). More than "more individuals": the nonequivalence of area and energy in the scaling of species richness. Am. Nat. 176, E50-E65. doi: 10.1086/650723
    • (2010) Am. Nat , vol.176 , pp. E50-E65
    • Hurlbert, A.H.1    Jetz, W.2
  • 10
    • 84895527388 scopus 로고    scopus 로고
    • When should species richness be energy limited, and how would we know?
    • Hurlbert, A. H., and Stegen, J. C. (2014). When should species richness be energy limited, and how would we know? Ecol. Lett. 17, 401-413. doi: 10.1111/ele.12240
    • (2014) Ecol. Lett , vol.17 , pp. 401-413
    • Hurlbert, A.H.1    Stegen, J.C.2
  • 11
    • 84869088692 scopus 로고    scopus 로고
    • The global diversity of birds in space and time
    • Jetz, W., Thomas, G. H., Joy, J. B., Hartmann, K., and Mooers, A. O. (2012). The global diversity of birds in space and time. Nature 491, 444-448. doi: 10.1038/nature11631
    • (2012) Nature , vol.491 , pp. 444-448
    • Jetz, W.1    Thomas, G.H.2    Joy, J.B.3    Hartmann, K.4    Mooers, A.O.5
  • 12
    • 80053134216 scopus 로고    scopus 로고
    • Disentangling the drivers of β diversity along latitudinal and elevational gradients
    • Kraft, N. J. B., Comita, L. S., Chase, J. M., Sanders, N. J., Swenson, N. G., Crist, T. O., et al. (2011). Disentangling the drivers of β diversity along latitudinal and elevational gradients. Science 333, 1755-1758. doi: 10.1126/science.1208584
    • (2011) Science , vol.333 , pp. 1755-1758
    • Kraft, N.J.B.1    Comita, L.S.2    Chase, J.M.3    Sanders, N.J.4    Swenson, N.G.5    Crist, T.O.6
  • 13
    • 0001857117 scopus 로고
    • '16S/23S rRNA sequencing, '
    • eds E. Stackebrandt and M. Goodfellow (New York, NY: Wiley)
    • Lane, D. J. (1991). "16S/23S rRNA sequencing, " in Nucleic Acid Techniques in Bacterial Systematics, eds E. Stackebrandt and M. Goodfellow (New York, NY: Wiley), 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 14
    • 84937395450 scopus 로고    scopus 로고
    • Changes in microbial communities along redox gradients in polygonized Arctic wet tundra soils
    • Lipson, D. A., Raab, T. K., Parker, M., Kelley, S. T., Brislawn, C. J., and Jansson, J. (2015). Changes in microbial communities along redox gradients in polygonized Arctic wet tundra soils. Environ. Microbiol. Rep. 7, 649-657. doi: 10.1111/1758-2229.12301
    • (2015) Environ. Microbiol. Rep , vol.7 , pp. 649-657
    • Lipson, D.A.1    Raab, T.K.2    Parker, M.3    Kelley, S.T.4    Brislawn, C.J.5    Jansson, J.6
  • 15
    • 84969749326 scopus 로고    scopus 로고
    • Scaling laws predict global microbial diversity
    • Locey, K. J., and Lennon, J. T. (2016). Scaling laws predict global microbial diversity. Proc. Nat. Acad. Sci. U.S.A. 113, 5970-5975. doi: 10.1073/pnas.1521291113
    • (2016) Proc. Nat. Acad. Sci. U.S.A , vol.113 , pp. 5970-5975
    • Locey, K.J.1    Lennon, J.T.2
  • 16
    • 0036146824 scopus 로고    scopus 로고
    • Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set
    • Nadkarni, M. A., Martin, F. E., Jacques, N. A., and Hunter, N. (2002). Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set. Microbiology 148, 257-266. doi: 10.1099/00221287-148-1-257
    • (2002) Microbiology , vol.148 , pp. 257-266
    • Nadkarni, M.A.1    Martin, F.E.2    Jacques, N.A.3    Hunter, N.4
  • 17
    • 0942299969 scopus 로고    scopus 로고
    • A unified mathematical framework for the measurement of richness and evenness within and among multiple communities
    • Olszewski, T. D. (2004). A unified mathematical framework for the measurement of richness and evenness within and among multiple communities. Oikos 104, 377-387. doi: 10.1111/j.0030-1299.2004.12519.x,
    • (2004) Oikos , vol.104 , pp. 377-387
    • Olszewski, T.D.1
  • 18
    • 13544265532 scopus 로고    scopus 로고
    • The role of spatial scale and the perception of large-scale species-richness patterns
    • Rahbek, C. (2005). The role of spatial scale and the perception of large-scale species-richness patterns. Ecol. Lett. 8, 224-239. doi: 10.1111/j.1461-0248.2004.00701.x
    • (2005) Ecol. Lett , vol.8 , pp. 224-239
    • Rahbek, C.1
  • 20
    • 0027043618 scopus 로고
    • Latitudinal gradients in species-diversity-the search for the primary cause
    • Rohde, K. (1992). Latitudinal gradients in species-diversity-the search for the primary cause. Oikos 65, 514-527. doi: 10.2307/3545569
    • (1992) Oikos , vol.65 , pp. 514-527
    • Rohde, K.1
  • 21
    • 84926456685 scopus 로고    scopus 로고
    • Towards a taxonomy of spatial scale-dependence
    • Sandel, B. (2015). Towards a taxonomy of spatial scale-dependence. Ecography 38, 358-369. doi: 10.1111/ecog.01034
    • (2015) Ecography , vol.38 , pp. 358-369
    • Sandel, B.1
  • 22
    • 77955163111 scopus 로고    scopus 로고
    • Scale, disturbance and productivity control the native-exotic richness relationship
    • Sandel, B., and Corbin, J. D. (2010). Scale, disturbance and productivity control the native-exotic richness relationship. Oikos 119, 1281-1290. doi: 10.1111/j.1600-0706.2010.18230.x
    • (2010) Oikos , vol.119 , pp. 1281-1290
    • Sandel, B.1    Corbin, J.D.2
  • 23
    • 84901262892 scopus 로고    scopus 로고
    • Humboldt's spa: microbial diversity is controlled by temperature in geothermal environments
    • Sharp, C. E., Brady, A. L., Sharp, G. H., Grasby, S. E., Stott, M. B., and Dunfield, P. F. (2014). Humboldt's spa: microbial diversity is controlled by temperature in geothermal environments. ISME J. 8, 1166-1174. doi: 10.1038/ismej.2013.237
    • (2014) ISME J , vol.8 , pp. 1166-1174
    • Sharp, C.E.1    Brady, A.L.2    Sharp, G.H.3    Grasby, S.E.4    Stott, M.B.5    Dunfield, P.F.6
  • 24
    • 67649258517 scopus 로고    scopus 로고
    • Cytoplasmic pH measurement and homeostasis in bacteria and Archaea
    • Slonczewski, J. L., Fujisawa, M., Dopson, M., and Krulwich, T. A. (2009). Cytoplasmic pH measurement and homeostasis in bacteria and Archaea. Adv. Microb. Physiol. 55, 1-79. doi: 10.1016/S0065-2911(09)05501-5
    • (2009) Adv. Microb. Physiol , vol.55 , pp. 1-79
    • Slonczewski, J.L.1    Fujisawa, M.2    Dopson, M.3    Krulwich, T.A.4
  • 25
    • 62149133787 scopus 로고    scopus 로고
    • Local-regional diversity relationship varies with spatial scale in lotic diatoms
    • Soininen, J., Heino, J., Kokocinski, M., and Muotka, T. (2009). Local-regional diversity relationship varies with spatial scale in lotic diatoms. J. Biogeogr. 36, 720-727. doi: 10.1111/j.1365-2699.2008.02034.x
    • (2009) J. Biogeogr , vol.36 , pp. 720-727
    • Soininen, J.1    Heino, J.2    Kokocinski, M.3    Muotka, T.4
  • 26
    • 84940049711 scopus 로고    scopus 로고
    • Shifts in microbial diversity through land use intensity as drivers of carbon mineralization in soil
    • Tardy, V., Spor, A., Mathieu, O., Leveque, J., Terrat, S., Plassart, P., et al. (2015). Shifts in microbial diversity through land use intensity as drivers of carbon mineralization in soil. Soil Biol. Biochem. 90, 204-213. doi: 10.1016/j.soilbio.2015.08.010
    • (2015) Soil Biol. Biochem , vol.90 , pp. 204-213
    • Tardy, V.1    Spor, A.2    Mathieu, O.3    Leveque, J.4    Terrat, S.5    Plassart, P.6
  • 27
    • 78149308446 scopus 로고    scopus 로고
    • Niche conservatism as an emerging principle in ecology and conservation biology
    • Wiens, J. J., Ackerly, D. D., Allen, A. P., Anacker, B. L., Buckley, L. B., Cornell, H. V., et al. (2010). Niche conservatism as an emerging principle in ecology and conservation biology. Ecol. Lett. 13, 1310-1324. doi: 10.1111/j.1461-0248.2010.01515.x
    • (2010) Ecol. Lett , vol.13 , pp. 1310-1324
    • Wiens, J.J.1    Ackerly, D.D.2    Allen, A.P.3    Anacker, B.L.4    Buckley, L.B.5    Cornell, H.V.6
  • 28
    • 0347473523 scopus 로고    scopus 로고
    • Latitudinal gradients of biodiversity: pattern, process, scale, and synthesis
    • Willig, M. R., Kaufman, D. M., and Stevens, R. D. (2003). Latitudinal gradients of biodiversity: pattern, process, scale, and synthesis. Ann. Rev. Ecol. Evol. Syst. 34, 273-309. doi: 10.1146/annurev.ecolsys.34.012103.144032
    • (2003) Ann. Rev. Ecol. Evol. Syst , vol.34 , pp. 273-309
    • Willig, M.R.1    Kaufman, D.M.2    Stevens, R.D.3
  • 29
    • 0020901565 scopus 로고
    • Species-energy theory: an extension of species-area theory
    • Wright, D. H. (1983). Species-energy theory: an extension of species-area theory. Oikos 41, 496-506. doi: 10.2307/3544109
    • (1983) Oikos , vol.41 , pp. 496-506
    • Wright, D.H.1
  • 30
    • 84919932248 scopus 로고    scopus 로고
    • Mechanisms of soil acidification reducing bacterial diversity
    • Zhang, X., Liu, W., Zhang, G., Jiang, L., and Han, X. (2015). Mechanisms of soil acidification reducing bacterial diversity. Soil Biol. Biochem. 81, 275-281. doi: 10.1016/j.soilbio.2014.11.004
    • (2015) Soil Biol. Biochem , vol.81 , pp. 275-281
    • Zhang, X.1    Liu, W.2    Zhang, G.3    Jiang, L.4    Han, X.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.