-
1
-
-
12144288737
-
Neuroinformatics: The integration of shared databases and tools towards integrative neuroscience
-
Amari, S.-I., Beltrame, F., Bjaalie, J. G., Dalkara, T., De Schutter, E., Egan, G. F., Goddard, N. H., Gonzalez, C., Grillner, S., Herz, A., Hoffmann, K.-P., Jaaskelainen, I., Koslow, S. H., Lee, S.-Y., Matthiessen, L., Miller, P. L., Da Silva, F. M., Novak, M., Ravindranath, V., Ritz, R., Ruotsalainen, U., Sebestra, V., Subramaniam, S., Tang, Y., Toga, A. W., Usui, S., Van Pelt, J., Verschure, P., Willshaw, D., and Wrobel, A. (2002). Neuroinformatics: the integration of shared databases and tools towards integrative neuroscience. J. Integr. Neurosci. 1, 117-128.
-
(2002)
J. Integr. Neurosci
, vol.1
, pp. 117-128
-
-
Amari, S.-I.1
Beltrame, F.2
Bjaalie, J.G.3
Dalkara, T.4
De Schutter, E.5
Egan, G.F.6
Goddard, N.H.7
Gonzalez, C.8
Grillner, S.9
Herz, A.10
Hoffmann, K.-P.11
Jaaskelainen, I.12
Koslow, S.H.13
Lee, S.-Y.14
Matthiessen, L.15
Miller, P.L.16
Da Silva, F.M.17
Novak, M.18
Ravindranath, V.19
Ritz, R.20
Ruotsalainen, U.21
Sebestra, V.22
Subramaniam, S.23
Tang, Y.24
Toga, A.W.25
Usui, S.26
Van Pelt, J.27
Verschure, P.28
Willshaw, D.29
Wrobel, A.30
more..
-
2
-
-
64049115518
-
Matching spatial with ontological brain regions using java tools for visualization, database access, and integrated data analysis
-
Bezgin, G., Reid, A. T., Schubert, D., and Kötter, R. (2009). Matching spatial with ontological brain regions using java tools for visualization, database access, and integrated data analysis. Neuroinformatics 7, 7-22.
-
(2009)
Neuroinformatics
, vol.7
, pp. 7-22
-
-
Bezgin, G.1
Reid, A.T.2
Schubert, D.3
Kötter, R.4
-
3
-
-
44449169388
-
Creating neuroscience ontologies
-
Bowden, D. M., Dubach, M., and Park, J. (2007). Creating neuroscience ontologies. Methods Mol. Biol. 401, 67-87.
-
(2007)
Methods Mol. Biol
, vol.401
, pp. 67-87
-
-
Bowden, D.M.1
Dubach, M.2
Park, J.3
-
5
-
-
58549105074
-
The nifstd and birnlex vocabularies: Building comprehensive ontologies for neuroscience
-
Bug, W. J., Ascoli, G. A., Grethe, J. S., Gupta, A., Fennema-Notestine, C., Laird, A. R., Larson, S. D., Rubin, D., Shepherd, G. M., Turner, J. A., and Martone, M. E. (2008). The nifstd and birnlex vocabularies: building comprehensive ontologies for neuroscience. Neuroinformatics 6, 175-194.
-
(2008)
Neuroinformatics
, vol.6
, pp. 175-194
-
-
Bug, W.J.1
Ascoli, G.A.2
Grethe, J.S.3
Gupta, A.4
Fennema-Notestine, C.5
Laird, A.R.6
Larson, S.D.7
Rubin, D.8
Shepherd, G.M.9
Turner, J.A.10
Martone, M.E.11
-
6
-
-
40549131156
-
XML for model specification in neuroscience
-
Crook, S., Beeman, D., Gleeson, P., and Howell, F. (2005). XML for model specification in neuroscience. Brains Minds Media 1. Available at: http://www.brains-minds-media.org/archive/228
-
(2005)
Brains Minds Media
, pp. 1
-
-
Crook, S.1
Beeman, D.2
Gleeson, P.3
Howell, F.4
-
7
-
-
6344252731
-
Signalml: Metaformat for description of biomedical time series
-
Durka, P., and Ircha, D. (2004). Signalml: metaformat for description of biomedical time series. Comput. Methods Programs Biomed. 76, 253-259.
-
(2004)
Comput. Methods Programs Biomed
, vol.76
, pp. 253-259
-
-
Durka, P.1
Ircha, D.2
-
8
-
-
53249132655
-
Neural network based pattern matching and spike detection tools and services-in the carmen neuroinformatics project
-
Fletcher, M., Liang, B., Smith, L., Knowles, A., Jackson, T., Jessop, M., and Austin, J. (2008). Neural network based pattern matching and spike detection tools and services-in the carmen neuroinformatics project. Neural. Netw. 21, 1076-1084.
-
(2008)
Neural. Netw
, vol.21
, pp. 1076-1084
-
-
Fletcher, M.1
Liang, B.2
Smith, L.3
Knowles, A.4
Jackson, T.5
Jessop, M.6
Austin, J.7
-
9
-
-
79952011614
-
Development of neural electromagnetic ontologies (NEMO): Ontology-based tools for representation and integration of event-related brain potentials
-
Buffalo, NY
-
Frishkoff, G., LePendu, P., Frank, R., Liu, H., and Dou, D. (2009). “Development of neural electromagnetic ontologies (NEMO): ontology-based tools for representation and integration of event-related brain potentials,” in Proceedings of the International Conference on Biomedical Ontologies, Buffalo, NY.
-
(2009)
Proceedings of the International Conference on Biomedical Ontologies
-
-
Frishkoff, G.1
Lependu, P.2
Frank, R.3
Liu, H.4
Dou, D.5
-
10
-
-
0035968432
-
Dynamic publication model for neurophysiology databases
-
Gardner, D., Abato, M., Knuth, K. H., DeBellis, R., and Erde, S. M. (2001a). Dynamic publication model for neurophysiology databases. Philos. Trans. R. Soc. Lond. B Biol. Sci. 356, 1229-1247.
-
(2001)
Philos. Trans. R. Soc. Lond. B Biol. Sci
, vol.356
, pp. 1229-1247
-
-
Gardner, D.1
Abato, M.2
Knuth, K.H.3
Debellis, R.4
Erde, S.M.5
-
11
-
-
0035132105
-
Common data model for neuroscience data and data model exchange
-
Gardner, D., Knuth, K. H., Abato, M., Erde, S. M., White, T., DeBellis, R., and Gardner, E. P. (2001b). Common data model for neuroscience data and data model exchange. J. Am. Med. Inform. Assoc. 8, 17-33.
-
(2001)
J. Am. Med. Inform. Assoc
, vol.8
, pp. 17-33
-
-
Gardner, D.1
Knuth, K.H.2
Abato, M.3
Erde, S.M.4
White, T.5
Debellis, R.6
Gardner, E.P.7
-
12
-
-
58549105478
-
Terminology for neuroscience data discovery: Multi-tree syntax and investigator-derived semantics
-
Gardner, D., Goldberg, D. H., Grafstein, B., Robert, A., and Gardner, E. P. (2008). Terminology for neuroscience data discovery: multi-tree syntax and investigator-derived semantics. Neuroinformatics 6, 161-174.
-
(2008)
Neuroinformatics
, vol.6
, pp. 161-174
-
-
Gardner, D.1
Goldberg, D.H.2
Grafstein, B.3
Robert, A.4
Gardner, E.P.5
-
13
-
-
0030754904
-
Flybase: A drosophila database. The flybase consortium
-
Gelbart, W. M., Crosby, M., Matthews, B., Rindone, W. P., Chillemi, J., Twombly, S. R., Emmert, D., Ashburner, M., Drysdale, R. A., Whitfield, E., Millburn, G. H., de Grey, A., Kaufman, T., Matthews, K., Gilbert, D., Strelets, V., and Tolstoshev, C. (1997). Flybase: a drosophila database. the flybase consortium. Nucleic Acids Res. 25, 63-66.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 63-66
-
-
Gelbart, W.M.1
Crosby, M.2
Matthews, B.3
Rindone, W.P.4
Chillemi, J.5
Twombly, S.R.6
Emmert, D.7
Ashburner, M.8
Drysdale, R.A.9
Whitfield, E.10
Millburn, G.H.11
De Grey, A.12
Kaufman, T.13
Matthews, K.14
Gilbert, D.15
Strelets, V.16
Tolstoshev, C.17
-
14
-
-
84856613647
-
The carmen virtual laboratory: Web-based paradigms for collaboration in neurophysiology
-
2008, Reutlingen
-
Gibson, F., Austin, J., Ingram, C., Fletcher, M., Jackson, T., Jessop, M., Knowles, A., Liang, B., Lord, P., Pitsilis, G., Periorellis, P., Simonotto, J., Watson, P., and Smith, L. (2008a). “The carmen virtual laboratory: web-based paradigms for collaboration in neurophysiology,” in 6th International Meeting on Substrate-Integrated Microelectrodes, 2008, Reutlingen.
-
(2008)
6Th International Meeting on Substrate-Integrated Microelectrodes
-
-
Gibson, F.1
Austin, J.2
Ingram, C.3
Fletcher, M.4
Jackson, T.5
Jessop, M.6
Knowles, A.7
Liang, B.8
Lord, P.9
Pitsilis, G.10
Periorellis, P.11
Simonotto, J.12
Watson, P.13
Smith, L.14
-
15
-
-
77957204152
-
Minimum information about a neuroscience investigation (MINI): Electrophysiology
-
Gibson, F., Overton, P., Smulders, T., Schultz, S., Eglen, S., Ingram, C., Panzeri, S., Bream, P., Whittington, M., Sernagor, E., Cunningham, M., Adams, C., Echtermeyer, C., Simonotto, J., Kaiser, M., Swan, D., Fletcher, M., and Lord, P. (2008b). Minimum information about a neuroscience investigation (MINI): electrophysiology. Nat. Precedings. Available at: http://hdl.handle.net/10101/npre.2009.1720.2
-
(2008)
Nat. Precedings
-
-
Gibson, F.1
Overton, P.2
Smulders, T.3
Schultz, S.4
Eglen, S.5
Ingram, C.6
Panzeri, S.7
Bream, P.8
Whittington, M.9
Sernagor, E.10
Cunningham, M.11
Adams, C.12
Echtermeyer, C.13
Simonotto, J.14
Kaiser, M.15
Swan, D.16
Fletcher, M.17
Lord, P.18
-
16
-
-
58549111780
-
Federated access to heterogeneous information resources in the neuroscience information framework (Nif)
-
Gupta, A., Bug, W., Marenco, L., Qian, X., Condit, C., Rangarajan, A., Müller, H. M., Miller, P. L., Sanders, B., Grethe, J. S., Astakhov, V., Shepherd, G., Sternberg, P. W., and Martone, M. E. (2008). Federated access to heterogeneous information resources in the neuroscience information framework (nif). Neuroinformatics 6, 205-217.
-
(2008)
Neuroinformatics
, vol.6
, pp. 205-217
-
-
Gupta, A.1
Bug, W.2
Marenco, L.3
Qian, X.4
Condit, C.5
Rangarajan, A.6
Müller, H.M.7
Miller, P.L.8
Sanders, B.9
Grethe, J.S.10
Astakhov, V.11
Shepherd, G.12
Sternberg, P.W.13
Martone, M.E.14
-
17
-
-
53249137802
-
G-node: An integrated tool-sharing platform to support cellular and systems neurophysiology in the age of global neuroinformatics
-
Herz, A. V. M., Meier, R., Nawrot, M. P., Schiegel, W., and Zito, T. (2008). G-node: an integrated tool-sharing platform to support cellular and systems neurophysiology in the age of global neuroinformatics. Neural. Netw. 21, 1070-1075.
-
(2008)
Neural. Netw
, vol.21
, pp. 1070-1075
-
-
Herz, A.V.M.1
Meier, R.2
Nawrot, M.P.3
Schiegel, W.4
Zito, T.5
-
19
-
-
84892535082
-
Ontologies for neuroscience: What are they and what are they good for?
-
Larson, S. D., and Martone, M. E. (2009). Ontologies for neuroscience: what are they and what are they good for? Front. Neurosci. 3:1. doi: 10.3389/neuro.01.007.2009
-
(2009)
Front. Neurosci
, vol.3
, pp. 1
-
-
Larson, S.D.1
Martone, M.E.2
-
20
-
-
0030792657
-
The embl nucleotide sequence database
-
Stoesser, G., Sterk, P., Tuli, M. A., Stoehr, P. J., and Cameron, G. N. (1997). The embl nucleotide sequence database. Nucleic Acids Res. 25, 7-14.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 7-14
-
-
Stoesser, G.1
Sterk, P.2
Tuli, M.A.3
Stoehr, P.J.4
Cameron, G.N.5
-
21
-
-
79959673377
-
Vision egg: An open-source library for realtime visual stimulus generation
-
Straw, A. D. (2008). Vision egg: an open-source library for realtime visual stimulus generation. Front. Neuroinformatics 2:4. doi: 10.3389/neuro.11.004.2008
-
(2008)
Front. Neuroinformatics
, vol.2
, pp. 4
-
-
Straw, A.D.1
-
22
-
-
45749118607
-
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: The mibbi project
-
Taylor, C. F., Field, D., Sansone, S.-A., Aerts, J., Apweiler, R., Ashburner, M., Ball, C. A., Binz, P.-A., Bogue, M., Booth, T., Brazma, A., Brinkman, R. R., Clark, A. M., Deutsch, E. W., Fiehn, O., Fostel, J., Ghazal, P., Gibson, F., Gray, T., Grimes, G., Hancock, J. M., Hardy, N. W., Hermjakob, H., Julian, R. K., Kane, M., Kettner, C., Kinsinger, C., Kolker, E., Kuiper, M., Novère, N. L., Leebens-Mack, J., Lewis, S. E., Lord, P., Mallon, A.-M., Marthandan, N., Masuya, H., McNally, R., Mehrle, A., Morrison, N., Orchard, S., Quackenbush, J., Reecy, J. M., Robertson, D. G., Rocca-Serra, P., Rodriguez, H., Rosenfelder, H., Santoyo-Lopez, J., Scheuermann, R. H., Schober, D., Smith, B., Snape, J., Stoeckert, C. J., Tipton, K., Sterk, P., Untergasser, A., Vandesompele, J., and Wiemann, S. (2008). Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the mibbi project. Nat. Biotechnol. 26, 889-896.
-
(2008)
Nat. Biotechnol
, vol.26
, pp. 889-896
-
-
Taylor, C.F.1
Field, D.2
Sansone, S.-A.3
Aerts, J.4
Apweiler, R.5
Ashburner, M.6
Ball, C.A.7
Binz, P.-A.8
Bogue, M.9
Booth, T.10
Brazma, A.11
Brinkman, R.R.12
Clark, A.M.13
Deutsch, E.W.14
Fiehn, O.15
Fostel, J.16
Ghazal, P.17
Gibson, F.18
Gray, T.19
Grimes, G.20
Hancock, J.M.21
Hardy, N.W.22
Hermjakob, H.23
Julian, R.K.24
Kane, M.25
Kettner, C.26
Kinsinger, C.27
Kolker, E.28
Kuiper, M.29
Novère, N.L.30
Leebens-Mack, J.31
Lewis, S.E.32
Lord, P.33
Mallon, A.-M.34
Marthandan, N.35
Masuya, H.36
McNally, R.37
Mehrle, A.38
Morrison, N.39
Orchard, S.40
Quackenbush, J.41
Reecy, J.M.42
Robertson, D.G.43
Rocca-Serra, P.44
Rodriguez, H.45
Rosenfelder, H.46
Santoyo-Lopez, J.47
Scheuermann, R.H.48
Schober, D.49
Smith, B.50
Snape, J.51
Stoeckert, C.J.52
Tipton, K.53
Sterk, P.54
Untergasser, A.55
Vandesompele, J.56
Wiemann, S.57
more..
-
23
-
-
56149096245
-
Data sharing for computational neuroscience
-
Teeters, J. L., Harris, K. D., Millman, K. J., Olshausen, B. A., and Sommer, F. T. (2008). Data sharing for computational neuroscience. Neuroinformatics 6, 47-55.
-
(2008)
Neuroinformatics
, vol.6
, pp. 47-55
-
-
Teeters, J.L.1
Harris, K.D.2
Millman, K.J.3
Olshausen, B.A.4
Sommer, F.T.5
|