More is better: Selecting for broad host range bacteriophages

Frontiers in Microbiology

Volumn 7, Issue SEP, 2016, Pages

  Ross, Alexa ^a   Ward, Samantha ^a   Hyman, Paul ^a  

^a ASHLAND UNIVERSITY   (United States)

Author keywords

Bacteriophage; Bacteriophage ecology; Bacteriophage evolution; Host range; Isolation protocol; Phage therapy; Phage host interaction

Indexed keywords

ARTICLE; BACTERIOPHAGE; BACTERIUM TRANSDUCTION; CITROBACTER FREUNDII; ENTEROCOCCUS FAECALIS; ESCHERICHIA COLI; GENE EXPRESSION; GENE TRANSFER; HOST RANGE; NONHUMAN; SHIGELLA SONNEI; VIRUS ISOLATION;

EID: 84992741122     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2016.01352     Document Type: Article

References (63)

1. Abedon, S. T. (2008). "Phages, ecology, evolution, "in Bacteriophage Ecology, ed. S. T. Abedon (Cambridge: Cambridge University Press), 1-28.
2. Abedon, S. T. (2011). Lysis from without. Bacteriophage 1, 46-49. doi: 10.4161/bact.1.1.13980
3. Ackermann, H. W., Caprioli, T., and Kasatiya, S. S. (1975). A large new Streptococcus bacteriophage. Can. J. Microbiol. 21, 571-574. doi: 10.1139/m75-080
4. Ackermann, H.-W., and DuBow, M. S. (1987). "Phage multiplication, "in Viruses of Prokaryotes: General Properties of Bacteriophages, Vol. 1, eds H.-W. Ackermann and M. S. DuBow (Boca Raton, Florida: CRC Press, Inc.), 49-85.
5. Adams, M. H. (1959). Bacteriophages. New York, NY: InterScience.
6. Anand, T., Vaid, R. K., Bera, B. C., Barua, S., Riyesh, T., Virmani, N., et al. (2015). Isolation and characterization of a bacteriophage with broad host range, displaying potential in preventing bovine diarrhoea. Virus Genes 51, 315-321. doi: 10.1007/s11262-015-1222-9
7. Auad, L., de Ruizholgado, A. A. P., Forsman, P., Alatossava, T., and Raya, R. R. (1997). Isolation and characterization of a new Lactobacillus delbrueckii ssp. bulgaricus temperate bacteriophage. J. Dairy Sci. 80, 2706-2712. doi: 10.3168/jds. S0022-0302(97)76231-3
8. Br�ssow, H. (2008). "Phage-bacterium co-evolution and its implication for bacterial pathogenesis, "in Horizontal Gene Transfer in the Evolution of Pathogenesis, eds M. Hensel and H. Schmidt (Cambridge: Cambridge University Press), 49-77.
9. Brussow, H. (2014). Phage therapy: quo vadis? Clin. Infect. Dis. 58, 535-536. doi: 10.1093/cid/cit776
10. Br�ssow, H., Canchaya, C., and Hardt, W. D. (2004). Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol. Mol. Biol. Rev. 68, 560-602. doi: 10.1128/MMBR.68.3.560-602.2004
11. Campbell, A. (1988). "Phage evolution and speciation, "in The Bacteriophages, Vol. 1, ed. R. Calendar (New York, NY: Plenum Press), 1-14.
12. Campos, J. M., Geisselsoder, J., and Zusman, D. R. (1978). Isolation of bacteriophage MX4, a generalized transducing phage for Myxococcus xanthus. J. Mol. Biol. 119, 167-178. doi: 10.1016/0022-2836(78)90431-X
13. Chan, B. K., and Abedon, S. T. (2012). Phage therapy pharmacology: phage cocktails. Adv. Appl. Microbiol. 78, 1-23. doi: 10.1016/B978-0-12-394805-2.00001-4
14. Chaturongakul, S., and Ounjai, P. (2014). Phage-host interplay: examples from tailed phages and Gram-negative bacterial pathogens. Front. Microbiol. 5:442. doi: 10.3389/fmicb.2014.00442
15. Chibani-Chennoufi, S., Bruttin, A., Dillmann, M. L., and Br�ssow, H. (2004). Phage-host interaction: an ecological perspective. J. Bacteriol. 186, 3677-3686. doi: 10.1128/JB.186.12.3677-3686.2004
16. Clark, J., Abedon, S. T., and Hyman, P. (2012). "Phages as therapeutic delivery vehicles, "in Bacteriophages in Health and Disease, eds P. Hyman and S. T. Abedon (Wallingford: CABI Press), 86-100.
17. De Groat, A. F. (1927). The bacteriophage: a method of isolation. J. Immunol. 14, 175-179.
18. d'H�relle, F., and Smith, G. H. (1926). The Bacteriophage and Its Behavior [English translation]. Baltimore: The Williams &Wilkins Co.
19. Diaz-Munoz, S. L., and Koskella, B. (2014). Bacteria-phage interactions in natural environments. Adv. Appl. Microbiol. 89, 135-183. doi: 10.1016/B978-0-12-800259-9.00004-4
20. Fortier, L. C., and Sekulovic, O. (2013). Importance of prophages to evolution and virulence of bacterial pathogens. Virulence 4, 354-365. doi: 10.4161/viru.24498
21. Gill, J. J., and Hyman, P. (2010). Phage choice, isolation, and preparation for phage therapy. Curr. Pharm. Biotechnol. 11, 2-14. doi: 10.2174/138920110790725311
22. Greene, J., and Goldberg, R. B. (1985). Isolation and preliminary characterization of lytic and lysogenic phages with wide host range within the streptomycetes. J. Gen. Microbiol. 131, 2459-2465. doi: 10.1099/00221287-131-9-2459
23. Gupta, R., and Prasad, Y. (2010). Efficacy of polyvalent bacteriophage P-27/HP to control multidrug resistant Staphylococcus aureus associated with human infections. Curr. Microbiol. 62, 255-260. doi: 10.1007/s00284-010-9699-x
24. Hendrix, R. W., and Casjens, S. R. (2008). "The role of bacteriophages in the generation and spread of bacterial pathogens, "in Horizontal Gene Transfer in the Evolution of Pathogenesis, eds M. Hensel and H. Schmidt (Cambridge: Cambridge University Press), 79-112.
25. Hyman, P., and Abedon, S. T. (2008). "Phage ecology of bacterial pathogenesis, "in Bacteriophage Ecology, ed. S. T. Abedon (Cambridge: Cambridge University Press), 353-385.
26. Hyman, P., and Abedon, S. T. (2010). Bacteriophage host range and bacterial resistance. Adv. Appl. Microbiol. 70, 217-248. doi: 10.1016/S0065-2164(10)70007-1
27. International Organization for Standardization (2000). Water Quality-Detection and Enumeration of Bacteriophages, Part 2: Enumeration of Somatic Coliphages. ISO 10705-2:2000(E). Geneva: International Organization for Standardization.
28. Jensen, E. C., Schrader, H. S., Rieland, B., Thompson, T. L., Lee, K. W., Nickerson, K. W., et al. (1998). Prevalence of broad-host-range lytic bacteriophages of Sphaerotilus natans, Escherichia coli, and Pseudomonas aeruginosa. Appl. Environ. Microbiol. 64, 575-580.
29. Jensen, K. C., Hair, B. B., Wienclaw, T. M., Murdock, M. H., Hatch, J. B., Trent, A. T., et al. (2015). Isolation and host range of bacteriophage with lytic activity against methicillin-resistant Staphylococcus aureus and potential use as a fomite decontaminant. PLoS ONE 10:e0131714. doi: 10.1371/journal.pone.0131714
30. Kelly, B. G., Vespermann, A., and Bolton, D. J. (2009). The role of horizontal gene transfer in the evolution of selected foodborne bacterial pathogens. Food Chem. Toxicol. 47, 951-968. doi: 10.1016/j.fct.2008.02.006
31. Khan, M. M., and Nilsson, A. S. (2015). Isolation of phages for phage therapy: a comparison of spot tests and efficiency of plating analyses for determination of host range and efficacy. PLoS ONE 10:e0118557. doi: 10.1371/journal.pone.0118557
32. Koskella, B., and Meaden, S. (2013). Understanding bacteriophage specificity in natural microbial communities. Viruses 5, 806-823. doi: 10.3390/v5030806
33. Kutateladze, M., and Adamia, R. (2010). Bacteriophages as potential new therapeutics to replace or supplement antibiotics. Trends Biotechnol. 28, 591-595. doi: 10.1016/j.tibtech.2010.08.001
34. Kutter, E. M., Kuhl, S. J., and Abedon, S. T. (2015). Re-establishing a place for phage therapy in western medicine. Future Microbiol. 10, 685-688. doi: 10.2217/fmb.15.28
35. Labrie, S. J., and Moineau, S. (2007). Abortive infection mechanisms and prophage sequences significantly influence the genetic makeup of emerging lytic lactococcal phages. J. Bacteriol. 189, 1482-1487. doi: 10.1128/JB.00728-07
36. Lin, L., Han, J., Ji, X., Hong, W., Huang, L., and Wei, Y. (2011). Isolation and characterization of a new bacteriophage MMP17 from Meiothermus. Extremophiles 15, 253-258. doi: 10.1007/s00792-010-0354-z
37. Lin, N. T., Chiou, P. Y., Chang, K. C., Chen, L. K., and Lai, M. J. (2010). Isolation and characterization of φAB2: a novel bacteriophage of Acinetobacter baumannii. Res. Microbiol. 161, 308-314. doi: 10.1016/j.resmic.2010.03.007
38. Loc-Carrillo, C., and Abedon, S. T. (2011). Pros and cons of phage therapy. Bacteriophage 1, 111-114. doi: 10.4161/bact.1.2.14590
39. Lu, T. K., and Koeris, M. S. (2011). The next generation of bacteriophage therapy. Curr. Opin. Mirobiol. 14, 524-531. doi: 10.1016/j.mib.2011.07.028
40. Lu, Z., Breidt, F. J., Fleming, H. P., Altermann, E., and Klaenhammer, T. R. (2003). Isolation and characterization of a Lactobacillus plantarum bacteriophage, φJL-1, from a cucumber fermentation. Int. J. Food Microbiol. 84, 225-235. doi: 10.1016/S0168-1605(03)00111-9
41. Mapes, A. C., Trautner, B. W., Liao, K. S., and Ramig, R. F. (2016). Development of expanded host range phage active on biofilms of multi-drug resistant Pseudomonas aeruginosa. Bacteriophage 6:e1096995. doi: 10.1080/21597081.2015.1096995
42. Markel, D. E., and Eklund, C. (1974). Isolation, characterization, and classification of three bacteriophage isolates for the genus Levinea. Int. J. Syst. Bacteriol. 24, 230-234. doi: 10.1099/00207713-24-2-230
43. McBride, S. M., Fischetti, V. A., Leblanc, D. J., Moellering, R. C. Jr., and Gilmore, M. S. (2007). Genetic diversity among Enterococcus faecalis. PLoS ONE 2:e582. doi: 10.1371/journal.pone.0000582
44. Nilsson, A. S. (2014). Phage therapy-constraints and possibilities. Ups. J. Med. Sci. 119, 192-198. doi: 10.3109/03009734.2014.902878
45. Pantucek, R., Rosypalova, A., Doskar, J., Kailerova, J., Ruzickov�, V., Borecka, P., et al. (1998). The polyvalent staphylococcal phage φ812: its host-range mutants and related phages. Virology 246, 241-252. doi: 10.1006/viro.1998.9203
46. Paolozzi, L., and Ghelardini, P. (2006). "The bacteriophage Mu, "in The Bacteriophages, eds R. Calendar and S. T. Abedon (Oxford: Oxford University Press), 469-496.
47. Peltomaa, R., Lopez-Perolio, I., Benito-Pena, E., Barderas, R., and Moreno-Bondi, M. C. (2016). Application of bacteriophages in sensor development. Anal. Bioanal. Chem. 408, 1805-1828. doi: 10.1007/s00216-015-9087-2
48. Ronda, C., Lopez, R., and Garcia, E. (1981). Isolation and characterization of a new bacteriophage, Cp-1, infecting Streptococcus pneumoniae. J. Virol. 40, 551-559.
49. Samson, J. E., Magadan, A. H., Sabri, M., and Moineau, S. (2013). Revenge of the phages: defeating bacterial defences. Nat. Rev. Microbiol. 11, 675-687. doi: 10.1038/nrmicro3096
50. Singh, A., Poshtiban, S., and Evoy, S. (2013). Recent advances in bacteriophage based biosensors for food-borne pathogen detection. Sensors (Basel) 13, 1763-1786. doi: 10.3390/s130201763
51. Stern, A., and Sorek, R. (2011). The phage-host arms race: shaping the evolution of microbes. Bioessays 33, 43-51. doi: 10.1002/bies.201000071
52. Summers, W. C. (2012). The strange history of phage therapy. Bacteriophage 2, 130-133. doi: 10.4161/bact.20757
53. Suttle, C. A. (2007). Marine viruses-major players in the global ecosystem. Nat. Rev. Microbiol. 5, 801-812. doi: 10.1038/nrmicro1750
54. Uchiyama, J., Rashel, M., Maeda, Y., Takemura, I., Sugihara, S., Akechi, K., et al. (2008). Isolation and characterization of a novel Enterococcus faecalis bacteriophage φEF24C as a therapeutic candidate. FEMS Microbiol. Lett. 278, 200-206. doi: 10.1111/j.1574-6968.2007.00996.x
55. Unkmeir, A., and Schmidt, H. (2000). Structural analysis of phage-borne stx genes and their flanking sequences in shiga toxin-producing Escherichia coli and Shigella dysenteriae type 1 strains. Infect. Immun. 68, 4856-4864. doi: 10.1128/IAI.68.9.4856-4864.2000
56. Vinod, M. G., Shivu, M. M., Umesha, K. R., Rajeeva, B. C., Krohne, G., Karunasagar, I., et al. (2006). Isolation of Vibrio harveyi bacteriophage with a potential for biocontrol of luminous vibriosis in hatchery environments. Aquaculture 255, 117-124. doi: 10.1016/j.aquaculture.2005.12.003
57. Weinbauer, M. G. (2004). Ecology of prokaryotic viruses. FEMS Microbiol. Rev. 28, 127-181. doi: 10.1016/j.femsre.2003.08.001
58. Westwater, C., Kasman, L. M., Schofield, D. A., Werner, P. A., Dolan, J. W., Schmidt, M. G., et al. (2003). Use of genetically engineered phage to deliver antimicrobial agents to bacteria: an alternative therapy for treatment of bacterial infections. Antimicrob. Agents Chemother. 47, 1301-1307. doi: 10.1128/AAC.47.4.1301-1307.2003
59. Wommack, K. E., and Colwell, R. R. (2000). Virioplankton: viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64, 69-114. doi: 10.1128/MMBR.64.1.69-114.2000
60. Xu, J., Chen, M., He, L., Zhang, S., Ding, T., Yao, H., et al. (2016). Isolation and characterization of a T4-like phage with a relatively wide host range within Escherichia coli. J. Basic Microbiol. 56, 405-421. doi: 10.1002/jobm.201500440
61. Yoong, P., Schuch, R., Nelson, D., and Fischetti, V. A. (2004). Identification of a broadly active phage lytic enzyme with lethal activity against antibiotic-resistant Enterococcus faecalis and Enterococcus faecium. J. Bacteriol. 186, 4808-4812. doi: 10.1128/JB.186.14.4808-4812.2004
62. Yu, P., Mathieu, J., Li, M., Dai, Z., and Alvarez, P. J. (2016). Isolation of polyvalent bacteriophages by sequential multiple-host approaches. Appl. Environ. Microbiol. 82, 808-815. doi: 10.1128/AEM.02382-15
63. Zourob, M., and Ripp, S. (2010). "Bacteriophage-based biosensors, "in Recognition Receptors in Biosensors, ed. M. Zourob (Berlin: Springer Science), 415-448.