-
1
-
-
84919623580
-
ECOD: An evolutionary classification of protein domains
-
Cheng H, Schaeffer RD, Liao Y, Kinch LN, Pei J, Shi S, Kim BH, Grishin NV. ECOD: an evolutionary classification of protein domains. PLoS Comput Biol 2014;10:e1003926
-
(2014)
Plos Comput Biol
, vol.10
-
-
Cheng, H.1
Schaeffer, R.D.2
Liao, Y.3
Kinch, L.N.4
Pei, J.5
Shi, S.6
Kim, B.H.7
Grishin, N.V.8
-
2
-
-
0025900486
-
Shuffled domains in extracellular proteins
-
Bork P. Shuffled domains in extracellular proteins. FEBS Lett 1991; 286:47-54.
-
(1991)
FEBS Lett
, vol.286
, pp. 47-54
-
-
Bork, P.1
-
3
-
-
0019443447
-
The anatomy and taxonomy of protein structure
-
Richardson JS. The anatomy and taxonomy of protein structure. Adv Protein Chem 1981;34:167-339.
-
(1981)
Adv Protein Chem
, vol.34
, pp. 167-339
-
-
Richardson, J.S.1
-
4
-
-
0015597839
-
Nucleation, rapid folding, and globular intrachain regions in proteins
-
Wetlaufer DB. Nucleation, rapid folding, and globular intrachain regions in proteins. Proc Natl Acad Sci USA 1973;70:697-701.
-
(1973)
Proc Natl Acad Sci USA
, vol.70
, pp. 697-701
-
-
Wetlaufer, D.B.1
-
5
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
6
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
(Web Server issue)
-
Soding J, Biegert A, Lupas AN. The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res 2005;33(Web Server issue):W244-W248.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. W244-W248
-
-
Soding, J.1
Biegert, A.2
Lupas, A.N.3
-
7
-
-
0042622381
-
LGA: A method for finding 3D similarities in protein structures
-
Zemla A. LGA: a method for finding 3D similarities in protein structures. Nucleic Acids Res 2003; 31:3370-3374.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3370-3374
-
-
Zemla, A.1
-
8
-
-
67849110427
-
Structure prediction for CASP8 with all-atom refinement using Rosetta
-
Raman S, Vernon R, Thompson J, Tyka M, Sadreyev R, Pei J, Kim D, Kellogg E, DiMaio F, Lange O, Kinch L, Sheffler W, Kim BH, Das R, Grishin NV, Baker D. Structure prediction for CASP8 with all-atom refinement using Rosetta. Proteins 2009;77:89-99.
-
(2009)
Proteins
, vol.77
, pp. 89-99
-
-
Raman, S.1
Vernon, R.2
Thompson, J.3
Tyka, M.4
Sadreyev, R.5
Pei, J.6
Kim, D.7
Kellogg, E.8
Dimaio, F.9
Lange, O.10
Kinch, L.11
Sheffler, W.12
Kim, B.H.13
Das, R.14
Grishin, N.V.15
Baker, D.16
-
9
-
-
80855132435
-
CASP9 target classification
-
Kinch LN, Shi S, Cheng H, Cong Q, Pei J, Mariani V, Schwede T, Grishin NV. CASP9 target classification. Proteins 2011;79:21-36.
-
(2011)
Proteins
, vol.79
, pp. 21-36
-
-
Kinch, L.N.1
Shi, S.2
Cheng, H.3
Cong, Q.4
Pei, J.5
Mariani, V.6
Schwede, T.7
Grishin, N.V.8
-
10
-
-
84941042486
-
NCBI’s conserved domain database
-
(Database issue)
-
Marchler-Bauer A, Derbyshire MK, Gonzales NR, Lu S, Chitsaz F, Geer LY, Geer RC, He J, Gwadz M, Hurwitz DI, Lanczycki CJ, Lu F, Marchler GH, Song JS, Thanki N, Wang Z, Yamashita RA, Zhang D, Zheng C, Bryant SH. CDD: NCBI’s conserved domain database. Nucleic Acids Res 2015;43(Database issue):D222-D226.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D222-D226
-
-
Marchler-Bauer, A.1
Derbyshire, M.K.2
Gonzales, N.R.3
Lu, S.4
Chitsaz, F.5
Geer, L.Y.6
Geer, R.C.7
He, J.8
Gwadz, M.9
Hurwitz, D.I.10
Lanczycki, C.J.11
Lu, F.12
Marchler, G.H.13
Song, J.S.14
Thanki, N.15
Wang, Z.16
Yamashita, R.A.17
Zhang, D.18
Zheng, C.19
Bryant, S.20
more..
-
11
-
-
84891782659
-
Pfam: The protein families database
-
(Database issue)
-
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M. Pfam: the protein families database. Nucleic Acids Res 2014;42(Database issue):D222-D230.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
Heger, A.7
Hetherington, K.8
Holm, L.9
Mistry, J.10
Sonnhammer, E.L.11
Tate, J.12
Punta, M.13
-
12
-
-
0003515251
-
-
London, New York: Allen & Unwin; Springer-Verlag
-
Ohno S. Evolution by gene duplication. London, New York: Allen & Unwin; Springer-Verlag; 1970. xv, 160 p.
-
(1970)
Evolution by Gene Duplication
-
-
Ohno, S.1
-
13
-
-
0033977962
-
SCOP: A structural classification of proteins database
-
Lo Conte L, Ailey B, Hubbard TJ, Brenner SE, Murzin AG, Chothia C. SCOP: a structural classification of proteins database. Nucleic Acids Res 2000;28:257-259.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 257-259
-
-
Lo Conte, L.1
Ailey, B.2
Hubbard, T.J.3
Brenner, S.E.4
Murzin, A.G.5
Chothia, C.6
-
14
-
-
0035946941
-
Comparison of ARM and HEAT protein repeats
-
Andrade MA, Petosa C, O’Donoghue SI, Muller CW, Bork P. Comparison of ARM and HEAT protein repeats. J Mol Biol 2001;309:1-18.
-
(2001)
J Mol Biol
, vol.309
, pp. 1-18
-
-
Andrade, M.A.1
Petosa, C.2
O’Donoghue, S.I.3
Muller, C.W.4
Bork, P.5
-
15
-
-
0035783062
-
Review: Proteins with repeated sequence-structural prediction and modeling
-
Kajava AV. Review: proteins with repeated sequence-structural prediction and modeling. J Struct Biol 2001;134:132-144.
-
(2001)
J Struct Biol
, vol.134
, pp. 132-144
-
-
Kajava, A.V.1
|