-
4
-
-
84895541683
-
® and the birth and rise of immunoinformatics
-
® and the birth and rise of immunoinformatics. Front Immunol (2014) 5:22. doi:10.3389/fimmu.2014.00022.
-
(2014)
Front Immunol
, vol.5
, pp. 22
-
-
Lefranc, M.-P.1
-
5
-
-
84867834056
-
® web portal for immunoglobulin (IG) or antibody and T cell receptor (TR) analysis from NGS high throughput and deep sequencing
-
® web portal for immunoglobulin (IG) or antibody and T cell receptor (TR) analysis from NGS high throughput and deep sequencing. Immunome Res (2012) 8(1):2. doi:10.4172/1745-7580.1000056.
-
(2012)
Immunome Res
, vol.8
, Issue.1
, pp. 2
-
-
Alamyar, E.1
Giudicelli, V.2
Li, S.3
Duroux, P.4
Lefranc, M.-P.5
-
6
-
-
84867350002
-
® tools for the nucleotide analysis of immunoglobulin IG and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS
-
® tools for the nucleotide analysis of immunoglobulin IG and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS. Methods Mol Biol (2012) 882:569-604. doi:10.1007/978-1-61779-842-9_32.
-
(2012)
Methods Mol Biol
, vol.882
, pp. 569-604
-
-
Alamyar, E.1
Duroux, P.2
Lefranc, M.-P.3
Giudicelli, V.4
-
8
-
-
84884165599
-
IMGT/HighV-QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling
-
Li S, Lefranc M-P, Miles JJ, Alamyar E, Giudicelli V, Duroux P, et al. IMGT/HighV-QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling. Nat Commun (2013) 4:2333. doi:10.1038/ncomms3333.
-
(2013)
Nat Commun
, vol.4
, pp. 2333
-
-
Li, S.1
Lefranc, M.-P.2
Miles, J.J.3
Alamyar, E.4
Giudicelli, V.5
Duroux, P.6
-
9
-
-
84951304292
-
IMGT/HighV-QUEST statistical significance of IMGT clonotype (AA) diversity per gene for standardized comparisons of next generation sequencing immunoprofiles of immunoglobulins and T cell receptors
-
Aouinti S, Malouche D, Giudicelli V, Kossida S, Lefranc M-P. IMGT/HighV-QUEST statistical significance of IMGT clonotype (AA) diversity per gene for standardized comparisons of next generation sequencing immunoprofiles of immunoglobulins and T cell receptors. PLoS One (2015) 10(11):e0142353. doi:10.1371/journal.pone.0142353.
-
(2015)
PLoS One
, vol.10
, Issue.11
-
-
Aouinti, S.1
Malouche, D.2
Giudicelli, V.3
Kossida, S.4
Lefranc, M.-P.5
-
12
-
-
84897935016
-
Differences in the composition of the human antibody repertoire by B cell subsets in the blood
-
Mroczek ES, Ippolito GC, Rogosch T, Hoi KH, Hwangpo TA, Brand MG, et al. Differences in the composition of the human antibody repertoire by B cell subsets in the blood. Front Immunol (2014) 5:96. doi:10.3389/fimmu.2014.00096.
-
(2014)
Front Immunol
, vol.5
, pp. 96
-
-
Mroczek, E.S.1
Ippolito, G.C.2
Rogosch, T.3
Hoi, K.H.4
Hwangpo, T.A.5
Brand, M.G.6
-
15
-
-
84947402121
-
Rectangular confidence regions for the means of multivariate normal distributions
-
Šidák Z. Rectangular confidence regions for the means of multivariate normal distributions. J Am Stat Assoc (1967) 62:626-33. doi:10.1080/01621459.1967.10482935.
-
(1967)
J Am Stat Assoc
, vol.62
, pp. 626-633
-
-
Šidák, Z.1
-
16
-
-
84992136405
-
A simple sequentially rejective multiple test procedure
-
Holm S. A simple sequentially rejective multiple test procedure. Scand J Stat (1979) 6:65-70.
-
(1979)
Scand J Stat
, vol.6
, pp. 65-70
-
-
Holm, S.1
-
17
-
-
33645762226
-
A sharper Bonferroni procedure for multiple tests of significance
-
Hochberg Y. A sharper Bonferroni procedure for multiple tests of significance. Biometrika (1988) 75(4):800-2. doi:10.1093/biomet/75.4.800.
-
(1988)
Biometrika
, vol.75
, Issue.4
, pp. 800-802
-
-
Hochberg, Y.1
-
18
-
-
84992096963
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Methodol (1995) 57(1):289-300. doi:10.2307/2346101.
-
(1995)
J R Stat Soc Series B Methodol
, vol.57
, Issue.1
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
19
-
-
0035733108
-
The control of the false discovery rate in multiple testing under dependency
-
Benjamini Y, Yekutieli D. The control of the false discovery rate in multiple testing under dependency. Ann Stat (2001) 29(4):1165-88. doi:10.1214/aos/1013699998.
-
(2001)
Ann Stat
, vol.29
, Issue.4
, pp. 1165-1188
-
-
Benjamini, Y.1
Yekutieli, D.2
-
20
-
-
13444273444
-
IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes
-
Giudicelli V, Chaume D, Lefranc M-P. IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res (2005) 33:D256-61. doi:10.1093/nar/gki010.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. D256-D261
-
-
Giudicelli, V.1
Chaume, D.2
Lefranc, M.-P.3
-
21
-
-
0037212339
-
IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains
-
Lefranc M-P, Pommié C, Ruiz M, Giudicelli V, Foulquier E, Truong L, et al. IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains. Dev Comp Immunol (2003) 27(1):55-77. doi:10.1016/S0145-305X(02)00039-3.
-
(2003)
Dev Comp Immunol
, vol.27
, Issue.1
, pp. 55-77
-
-
Lefranc, M.-P.1
Pommié, C.2
Ruiz, M.3
Giudicelli, V.4
Foulquier, E.5
Truong, L.6
-
22
-
-
1242276733
-
IMGT standardized criteria for statistical analysis of immunoglobulin V-REGION amino acid properties
-
Pommié C, Levadoux S, Sabatier R, Lefranc G, Lefranc MP. IMGT standardized criteria for statistical analysis of immunoglobulin V-REGION amino acid properties. J Mol Recognit (2004) 17:17-32. doi:10.1002/jmr.647.
-
(2004)
J Mol Recognit
, vol.17
, pp. 17-32
-
-
Pommié, C.1
Levadoux, S.2
Sabatier, R.3
Lefranc, G.4
Lefranc, M.P.5
-
23
-
-
84856043672
-
The mathematical theory of communication
-
423
-
Shannon CE. The mathematical theory of communication. Bell Syst Tech J (1948) 27(379-423):623-56. doi:10.1002/j.1538-7305.1948.tb00917.x.
-
(1948)
Bell Syst Tech J
, vol.27
, Issue.379
, pp. 623-656
-
-
Shannon, C.E.1
-
24
-
-
0017747498
-
Unusual distribution of amino acids in complementarity-determing (hypervariable) segments of heavy and light chains of immunoglobulins and their possible roles in specificity of antibody combining sites
-
Kabat EA, Wu TT, Bilofsky H. Unusual distribution of amino acids in complementarity-determing (hypervariable) segments of heavy and light chains of immunoglobulins and their possible roles in specificity of antibody combining sites. J Biol Chem (1977) 252:6609-16.
-
(1977)
J Biol Chem
, vol.252
, pp. 6609-6616
-
-
Kabat, E.A.1
Wu, T.T.2
Bilofsky, H.3
-
25
-
-
33344464667
-
Measurement of diversity
-
Simpson EH. Measurement of diversity. Nature (1949) 163:688. doi:10.1038/163688a0.
-
(1949)
Nature
, vol.163
, pp. 688
-
-
Simpson, E.H.1
-
26
-
-
84874137715
-
Immunoglobulin analysis tool: a novel tool for the analysis of human and mouse heavy and light chain transcripts
-
Rogosch T, Kerzel S, Hoi KH, Zhang Z, Maier RF, Ippolito GC, et al. Immunoglobulin analysis tool: a novel tool for the analysis of human and mouse heavy and light chain transcripts. Front Immunol (2012) 3:176. doi:10.3389/fimmu.2012.00176.
-
(2012)
Front Immunol
, vol.3
, pp. 176
-
-
Rogosch, T.1
Kerzel, S.2
Hoi, K.H.3
Zhang, Z.4
Maier, R.F.5
Ippolito, G.C.6
-
28
-
-
37249026668
-
Reshaping data with the reshape package
-
Wickham H. Reshaping data with the reshape package. J Stat Softw (2007) 21(12):1-20. doi:10.18637/jss.v021.i12.
-
(2007)
J Stat Softw
, vol.21
, Issue.12
, pp. 1-20
-
-
Wickham, H.1
-
29
-
-
84992044852
-
-
with contributions from Saporta R, Antonyan E. data.table: Extension of Data.frame. R Package Version 1.9.6
-
Dowle M, Srinivasan A, Short T, Lianoglou S, with contributions from Saporta R, Antonyan E. data.table: Extension of Data.frame. R Package Version 1.9.6. (2015). Available from: https://CRAN.R-project.org/package=data.table.
-
(2015)
-
-
Dowle, M.1
Srinivasan, A.2
Short, T.3
Lianoglou, S.4
-
34
-
-
84991504520
-
-
R Package Version 3.4.13
-
Sievert C, Parmer C, Hocking T, Chamberlain S, Ram K, Corvellec M, et al. plotly: Create Interactive Web Graphics via 'plotly.js'. R Package Version 3.4.13. (2016). Available from: https://CRAN.R-project.org/package=plotly.
-
(2016)
plotly: Create Interactive Web Graphics via 'plotly.js'
-
-
Sievert, C.1
Parmer, C.2
Hocking, T.3
Chamberlain, S.4
Ram, K.5
Corvellec, M.6
-
36
-
-
33644922417
-
Multiple Testing Procedures: R multtest Package and Applications to Genomics
-
Gentleman R, Carey V, Huber W, Irizarry R, Dudoit S, editors. New York: Springer (Statistics for Biology and Health Series)
-
Pollard KS, Dudoit S, van der Laan MJ. In: Gentleman R, Carey V, Huber W, Irizarry R, Dudoit S, editors. Multiple Testing Procedures: R multtest Package and Applications to Genomics, in Bioinformatics and Computational Biology Solutions Using R and Bioconductor. New York: Springer (Statistics for Biology and Health Series) (2005).
-
(2005)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
-
-
Pollard, K.S.1
Dudoit, S.2
van der Laan, M.J.3
|