-
2
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Edited by R. Altman, D. Brutlag, P. Karp, R. Lathrop & D. Searls. Menlo Park, CA: AAAI Press
-
Bailey, T. L. & Elkan, C. (1994). Fitting a mixture model by expectation maximization to discover motifs in biopolymers. In Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36. Edited by R. Altman, D. Brutlag, P. Karp, R. Lathrop & D. Searls. Menlo Park, CA: AAAI Press.
-
(1994)
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
3
-
-
0033570908
-
Compilation and analysis of s 54-dependent promoter sequences
-
Barrios, H., Valderrama, B. & Morett, E. (1999). Compilation and analysis of s 54-dependent promoter sequences. Nucleic Acids Res 27, 4305-4313.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4305-4313
-
-
Barrios, H.1
Valderrama, B.2
Morett, E.3
-
4
-
-
30744469406
-
Polar flagellum biogenesis in Aeromonas hydrophila
-
Canals, R., Ramirez, S., Vilches, S., Horsburgh, G., Shaw, J. G., Tomás, J. M. & Merino, S. (2006). Polar flagellum biogenesis in Aeromonas hydrophila. J Bacteriol 188, 542-555.
-
(2006)
J Bacteriol
, vol.188
, pp. 542-555
-
-
Canals, R.1
Ramirez, S.2
Vilches, S.3
Horsburgh, G.4
Shaw, J.G.5
Tomás, J.M.6
Merino, S.7
-
5
-
-
0034444676
-
Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coli
-
Chilcott, G. S. & Hughes, K. T. (2000). Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coli. Microbiol Mol Biol Rev 64, 694-708.
-
(2000)
Microbiol Mol Biol Rev
, vol.64
, pp. 694-708
-
-
Chilcott, G.S.1
Hughes, K.T.2
-
6
-
-
0036386339
-
Interaction of the atypical prokaryotic transcription activator FlhD2C2 with early promoters of the flagellar gene hierarchy
-
Claret, L. & Hughes, C. (2002). Interaction of the atypical prokaryotic transcription activator FlhD2C2 with early promoters of the flagellar gene hierarchy. J Mol Biol 321, 185-199.
-
(2002)
J Mol Biol
, vol.321
, pp. 185-199
-
-
Claret, L.1
Hughes, C.2
-
7
-
-
84873997497
-
Swarming motility in Bradyrhizobium japonicum
-
Covelli, J. M., Althabegoiti, M. J., López, M. F. & Lodeiro, A. R. (2013). Swarming motility in Bradyrhizobium japonicum. Res Microbiol 164, 136-144.
-
(2013)
Res Microbiol
, vol.164
, pp. 136-144
-
-
Covelli, J.M.1
Althabegoiti, M.J.2
López, M.F.3
Lodeiro, A.R.4
-
8
-
-
0242521414
-
A four-tiered transcriptional regulatory circuit controls flagellar biogenesis in Pseudomonas aeruginosa
-
Dasgupta, N., Wolfgang, M. C., Goodman, A. L., Arora, S. K., Jyot, J., Lory, S. & Ramphal, R. (2003). A four-tiered transcriptional regulatory circuit controls flagellar biogenesis in Pseudomonas aeruginosa. Mol Microbiol 50, 809-824.
-
(2003)
Mol Microbiol
, vol.50
, pp. 809-824
-
-
Dasgupta, N.1
Wolfgang, M.C.2
Goodman, A.L.3
Arora, S.K.4
Jyot, J.5
Lory, S.6
Ramphal, R.7
-
9
-
-
0024337063
-
The organization of the Caulobacter crescentus flagellar filament
-
Driks, A., Bryan, R., Shapiro, L. & DeRosier, D. J. (1989). The organization of the Caulobacter crescentus flagellar filament. J Mol Biol 206, 627-636.
-
(1989)
J Mol Biol
, vol.206
, pp. 627-636
-
-
Driks, A.1
Bryan, R.2
Shapiro, L.3
DeRosier, D.J.4
-
10
-
-
54949088268
-
The deep-sea bacterium Photobacterium profundum SS9 utilizes separate flagellar systems for swimming and swarming under high-pressure conditions
-
Eloe, E. A., Lauro, F. M., Vogel, R. F. & Bartlett, D. H. (2008). The deep-sea bacterium Photobacterium profundum SS9 utilizes separate flagellar systems for swimming and swarming under high-pressure conditions. Appl Environ Microbiol 74, 6298-6305.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 6298-6305
-
-
Eloe, E.A.1
Lauro, F.M.2
Vogel, R.F.3
Bartlett, D.H.4
-
11
-
-
79958158232
-
Flagellin redundancy in Caulobacter crescentus and its implications for flagellar filament assembly
-
Faulds-Pain, A., Birchall, C., Aldridge, C., Smith, W. D., Grimaldi, G., Nakamura, S., Miyata, T., Gray, J., Li, G. & other authors (2011). Flagellin redundancy in Caulobacter crescentus and its implications for flagellar filament assembly. J Bacteriol 193, 2695-2707.
-
(2011)
J Bacteriol
, vol.193
, pp. 2695-2707
-
-
Faulds-Pain, A.1
Birchall, C.2
Aldridge, C.3
Smith, W.D.4
Grimaldi, G.5
Nakamura, S.6
Miyata, T.7
Gray, J.8
Li, G.9
-
12
-
-
27144480291
-
Proteomics-based identification of outer-membrane proteins responsible for import of macromolecules in Sphingomonas sp. A1: Alginate-binding flagellin on the cell surface
-
Hashimoto, W., He, J., Wada, Y., Nankai, H., Mikami, B. & Murata, K. (2005). Proteomics-based identification of outer-membrane proteins responsible for import of macromolecules in Sphingomonas sp. A1: alginate-binding flagellin on the cell surface. Biochemistry 44, 13783-13794.
-
(2005)
Biochemistry
, vol.44
, pp. 13783-13794
-
-
Hashimoto, W.1
He, J.2
Wada, Y.3
Nankai, H.4
Mikami, B.5
Murata, K.6
-
13
-
-
84903384919
-
Alginate-dependent gene expression mechanism in Sphingomonas sp. strain A1
-
Hayashi, C., Takase, R., Momma, K., Maruyama, Y., Murata, K. & Hashimoto, W. (2014). Alginate-dependent gene expression mechanism in Sphingomonas sp. strain A1. J Bacteriol 196, 2691-2700.
-
(2014)
J Bacteriol
, vol.196
, pp. 2691-2700
-
-
Hayashi, C.1
Takase, R.2
Momma, K.3
Maruyama, Y.4
Murata, K.5
Hashimoto, W.6
-
14
-
-
0029159895
-
Direct uptake of alginate molecules through a pit on the bacterial cell surface: A novel mechanism for the uptake of macromolecules
-
Hisano, T., Yonemoto, Y., Yamashita, T., Fukuda, Y., Kimura, A. & Murata, K. (1995). Direct uptake of alginate molecules through a pit on the bacterial cell surface: a novel mechanism for the uptake of macromolecules. J Ferment Bioeng 79, 538-544.
-
(1995)
J Ferment Bioeng
, vol.79
, pp. 538-544
-
-
Hisano, T.1
Yonemoto, Y.2
Yamashita, T.3
Fukuda, Y.4
Kimura, A.5
Murata, K.6
-
15
-
-
0033149857
-
Reevaluation of the promoter structure of the class 3 flagellar operons of Escherichia coli and Salmonella
-
Ide, N., Ikebe, T. & Kutsukake, K. (1999). Reevaluation of the promoter structure of the class 3 flagellar operons of Escherichia coli and Salmonella. Genes Genet Syst 74, 113-116.
-
(1999)
Genes Genet Syst
, vol.74
, pp. 113-116
-
-
Ide, N.1
Ikebe, T.2
Kutsukake, K.3
-
16
-
-
70449674084
-
Roles of multiple flagellins in flagellar formation and flagellar growth post bdelloplast lysis in Bdellovibrio bacteriovorus
-
Iida, Y., Hobley, L., Lambert, C., Fenton, A. K., Sockett, R. E. & Aizawa, S. (2009). Roles of multiple flagellins in flagellar formation and flagellar growth post bdelloplast lysis in Bdellovibrio bacteriovorus. J Mol Biol 394, 1011-1021.
-
(2009)
J Mol Biol
, vol.394
, pp. 1011-1021
-
-
Iida, Y.1
Hobley, L.2
Lambert, C.3
Fenton, A.K.4
Sockett, R.E.5
Aizawa, S.6
-
17
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry, R. A., Bolstad, B. M., Collin, F., Cope, L. M., Hobbs, B. & Speed, T. P. (2003a). Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res 31, e15.
-
(2003)
Nucleic Acids Res
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
18
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry, R. A., Hobbs, B., Collin, F., Beazer-Barclay, Y. D., Antonellis, K. J., Scherf, U. & Speed, T. P. (2003b). Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4, 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
19
-
-
33846609721
-
Characterization of two sets of subpolar flagella in Bradyrhizobium japonicum
-
Kanbe, M., Yagasaki, J., Zehner, S., Göttfert, M. & Aizawa, S. (2007). Characterization of two sets of subpolar flagella in Bradyrhizobium japonicum. J Bacteriol 189, 1083-1089.
-
(2007)
J Bacteriol
, vol.189
, pp. 1083-1089
-
-
Kanbe, M.1
Yagasaki, J.2
Zehner, S.3
Göttfert, M.4
Aizawa, S.5
-
20
-
-
84877817732
-
Spatial and numerical regulation of flagellar biosynthesis in polarly flagellated bacteria
-
Kazmierczak, B. I. & Hendrixson, D. R. (2013). Spatial and numerical regulation of flagellar biosynthesis in polarly flagellated bacteria. Mol Microbiol 88, 655-663.
-
(2013)
Mol Microbiol
, vol.88
, pp. 655-663
-
-
Kazmierczak, B.I.1
Hendrixson, D.R.2
-
21
-
-
0034046746
-
Analysis of the polar flagellar gene system of Vibrio parahaemolyticus
-
Kim, Y. K. & McCarter, L. L. (2000). Analysis of the polar flagellar gene system of Vibrio parahaemolyticus. J Bacteriol 182, 3693-3704.
-
(2000)
J Bacteriol
, vol.182
, pp. 3693-3704
-
-
Kim, Y.K.1
McCarter, L.L.2
-
22
-
-
32944458166
-
Regulation of polar flagellar number by the flhF and flhG genes in Vibrio alginolyticus
-
Kusumoto, A., Kamisaka, K., Yakushi, T., Terashima, H., Shinohara, A. & Homma, M. (2006). Regulation of polar flagellar number by the flhF and flhG genes in Vibrio alginolyticus. J Biochem 139, 113-121.
-
(2006)
J Biochem
, vol.139
, pp. 113-121
-
-
Kusumoto, A.1
Kamisaka, K.2
Yakushi, T.3
Terashima, H.4
Shinohara, A.5
Homma, M.6
-
24
-
-
0029884685
-
Applications of network blast server
-
Madden, T. L., Tatusov, R. L. & Zhang, J. (1996). Applications of network blast server. Methods Enzymol 266, 131-141.
-
(1996)
Methods Enzymol
, vol.266
, pp. 131-141
-
-
Madden, T.L.1
Tatusov, R.L.2
Zhang, J.3
-
25
-
-
2642535090
-
Dual flagellar systems enable motility under different circumstances
-
McCarter, L. L. (2004). Dual flagellar systems enable motility under different circumstances. J Mol Microbiol Biotechnol 7, 18-29.
-
(2004)
J Mol Microbiol Biotechnol
, vol.7
, pp. 18-29
-
-
McCarter, L.L.1
-
26
-
-
33748808416
-
Bacterial lateral flagella: An inducible flagella system
-
Merino, S., Shaw, J. G. & Tomás, J. M. (2006). Bacterial lateral flagella: an inducible flagella system. FEMS Microbiol Lett 263, 127-135.
-
(2006)
FEMS Microbiol Lett
, vol.263
, pp. 127-135
-
-
Merino, S.1
Shaw, J.G.2
Tomás, J.M.3
-
27
-
-
0029088453
-
Characterization of Pseudomonas paucimobilis FP2001 which forms flagella depending upon the presence of rhamnose in liquid medium
-
Miake, F., Murata, K., Kuroiwa, A., Kumamoto, T., Kuroda, S., Terasawa, T., Tone, H. & Watanabe, K. (1995). Characterization of Pseudomonas paucimobilis FP2001 which forms flagella depending upon the presence of rhamnose in liquid medium. Microbiol Immunol 39, 437-442.
-
(1995)
Microbiol Immunol
, vol.39
, pp. 437-442
-
-
Miake, F.1
Murata, K.2
Kuroiwa, A.3
Kumamoto, T.4
Kuroda, S.5
Terasawa, T.6
Tone, H.7
Watanabe, K.8
-
28
-
-
0029563005
-
Cloning, sequencing, and phenotypic analysis of laf1, encoding the flagellin of the lateral flagella of Azospirillum brasilense Sp7
-
Moens, S., Michiels, K., Keijers, V., Van Leuven, F. & Vanderleyden, J. (1995). Cloning, sequencing, and phenotypic analysis of laf1, encoding the flagellin of the lateral flagella of Azospirillum brasilense Sp7. J Bacteriol 177, 5419-5426.
-
(1995)
J Bacteriol
, vol.177
, pp. 5419-5426
-
-
Moens, S.1
Michiels, K.2
Keijers, V.3
Van Leuven, F.4
Vanderleyden, J.5
-
29
-
-
0037228461
-
Flagella and motility in Actinobacillus pleuropneumoniae
-
Negrete-Abascal, E., Reyes, M. E., García, R. M., Vaca, S., Girón, J. A., García, O., Zenteno, E. & De La Garza, M. (2003). Flagella and motility in Actinobacillus pleuropneumoniae. J Bacteriol 185, 664-668.
-
(2003)
J Bacteriol
, vol.185
, pp. 664-668
-
-
Negrete-Abascal, E.1
Reyes, M.E.2
García, R.M.3
Vaca, S.4
Girón, J.A.5
García, O.6
Zenteno, E.7
De La Garza, M.8
-
30
-
-
0030203863
-
TreeView: An application to display phylogenetic trees on personal computers
-
Page, R. D. M. (1996). TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
-
31
-
-
34247895585
-
A complete set of flagellar genes acquired by horizontal transfer coexists with the endogenous flagellar system in Rhodobacter sphaeroides
-
Poggio, S., Abreu-Goodger, C., Fabela, S., Osorio, A., Dreyfus, G., Vinuesa, P. & Camarena, L. (2007). A complete set of flagellar genes acquired by horizontal transfer coexists with the endogenous flagellar system in Rhodobacter sphaeroides. J Bacteriol 189, 3208-3216.
-
(2007)
J Bacteriol
, vol.189
, pp. 3208-3216
-
-
Poggio, S.1
Abreu-Goodger, C.2
Fabela, S.3
Osorio, A.4
Dreyfus, G.5
Vinuesa, P.6
Camarena, L.7
-
32
-
-
14544267783
-
The Flag-2 locus, an ancestral gene cluster, is potentially associated with a novel flagellar system from Escherichia coli
-
Ren, C. P., Beatson, S. A., Parkhill, J. & Pallen, M. J. (2005). The Flag-2 locus, an ancestral gene cluster, is potentially associated with a novel flagellar system from Escherichia coli. J Bacteriol 187, 1430-1440.
-
(2005)
J Bacteriol
, vol.187
, pp. 1430-1440
-
-
Ren, C.P.1
Beatson, S.A.2
Parkhill, J.3
Pallen, M.J.4
-
34
-
-
0030659786
-
Photoresponses of the purple nonsulfur bacteria Rhodospirillum centenum and Rhodobacter sphaeroides
-
Sackett, M. J., Armitage, J. P., Sherwood, E. E. & Pitta, T. P. (1997). Photoresponses of the purple nonsulfur bacteria Rhodospirillum centenum and Rhodobacter sphaeroides. J Bacteriol 179, 6764-6768.
-
(1997)
J Bacteriol
, vol.179
, pp. 6764-6768
-
-
Sackett, M.J.1
Armitage, J.P.2
Sherwood, E.E.3
Pitta, T.P.4
-
35
-
-
0022196212
-
Peritrichous flagella in mesophilic strains of Aeromonas
-
Shimada, T., Sakazaki, R. & Suzuki, K. (1985). Peritrichous flagella in mesophilic strains of Aeromonas. Jpn J Med Sci Biol 38, 141-145.
-
(1985)
Jpn J Med Sci Biol
, vol.38
, pp. 141-145
-
-
Shimada, T.1
Sakazaki, R.2
Suzuki, K.3
-
36
-
-
21344438197
-
Binding and transcriptional activation of non-flagellar genes by the Escherichia coli flagellar master regulator FlhD2C2
-
Stafford, G. P., Ogi, T. & Hughes, C. (2005). Binding and transcriptional activation of non-flagellar genes by the Escherichia coli flagellar master regulator FlhD2C2. Microbiology 151, 1779-1788.
-
(2005)
Microbiology
, vol.151
, pp. 1779-1788
-
-
Stafford, G.P.1
Ogi, T.2
Hughes, C.3
-
37
-
-
0038105066
-
Lateral flagellar gene system of Vibrio parahaemolyticus
-
Stewart, B. J. & McCarter, L. L. (2003). Lateral flagellar gene system of Vibrio parahaemolyticus. J Bacteriol 185, 4508-4518.
-
(2003)
J Bacteriol
, vol.185
, pp. 4508-4518
-
-
Stewart, B.J.1
McCarter, L.L.2
-
38
-
-
0027968068
-
Clustal w: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). Clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
39
-
-
84875551761
-
Aeromonas hydrophila lateral flagellar gene transcriptional hierarchy
-
Wilhelms, M., Gonzalez, V., Tomás, J. M. & Merino, S. (2013). Aeromonas hydrophila lateral flagellar gene transcriptional hierarchy. J Bacteriol 195, 1436-1445.
-
(2013)
J Bacteriol
, vol.195
, pp. 1436-1445
-
-
Wilhelms, M.1
Gonzalez, V.2
Tomás, J.M.3
Merino, S.4
-
40
-
-
0035074727
-
Proposal of Sphingomonas wittichii sp. nov. for strain RW1T, known as a dibenzo-p-dioxin metabolizer
-
Yabuuchi, E., Yamamoto, H., Terakubo, S., Okamura, N., Naka, T., Fujiwara, N., Kobayashi, K., Kosako, Y. & Hiraishi, A. (2001). Proposal of Sphingomonas wittichii sp. nov. for strain RW1T, known as a dibenzo-p-dioxin metabolizer. Int J Syst Evol Microbiol 51, 281-292.
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, pp. 281-292
-
-
Yabuuchi, E.1
Yamamoto, H.2
Terakubo, S.3
Okamura, N.4
Naka, T.5
Fujiwara, N.6
Kobayashi, K.7
Kosako, Y.8
Hiraishi, A.9
-
41
-
-
0026051791
-
Bacterial alginate lyase: Characterization of alginate lyaseproducing bacteria and purification of the enzyme
-
Yonemoto, Y., Murata, K., Kimura, A., Yamaguchi, H. & Okayama, K. (1991). Bacterial alginate lyase: characterization of alginate lyaseproducing bacteria and purification of the enzyme. J Ferment Bioeng 72, 152-157.
-
(1991)
J Ferment Bioeng
, vol.72
, pp. 152-157
-
-
Yonemoto, Y.1
Murata, K.2
Kimura, A.3
Yamaguchi, H.4
Okayama, K.5
|