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Volumn 7, Issue AUG, 2016, Pages

Editorial: New insights into microbial ecology through subtle nucleotide variation

Author keywords

16S rRNA gene; High resolution; Microbial ecology; Minimum entropy decomposition; Oligotyping

Indexed keywords

RNA 16S;

EID: 84989162248     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2016.01318     Document Type: Editorial
Times cited : (12)

References (15)
  • 2
    • 84889649570 scopus 로고    scopus 로고
    • Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data
    • Eren, A. M., Maignien, L., Sul, W. J., Murphy, L. G., Grim, S. L., Morrison, H. G., et al. (2013). Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data. Methods Ecol. Evol. 4, 1111-1119. doi: 10.1111/2041-210X.12114
    • (2013) Methods Ecol. Evol , vol.4 , pp. 1111-1119
    • Eren, A.M.1    Maignien, L.2    Sul, W.J.3    Murphy, L.G.4    Grim, S.L.5    Morrison, H.G.6
  • 3
    • 84925044505 scopus 로고    scopus 로고
    • Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
    • Eren, A. M., Morrison, H. G., Lescault, P. J., Reveillaud, J., Vineis, J. H., and Sogin, M. L. (2014). Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences. ISME J. 9, 968-979. doi: 10.1038/ismej.2014.195
    • (2014) ISME J , vol.9 , pp. 968-979
    • Eren, A.M.1    Morrison, H.G.2    Lescault, P.J.3    Reveillaud, J.4    Vineis, J.H.5    Sogin, M.L.6
  • 4
    • 84927697837 scopus 로고    scopus 로고
    • A single genus in the gut microbiome reflects host preference and specificity
    • Eren, A. M., Sogin, M. L., Morrison, H. G., Vineis, J. H., Fisher, J. C., Newton, R. J., et al. (2015). A single genus in the gut microbiome reflects host preference and specificity. ISME J. 9, 90-100. doi: 10.1038/ismej.2014.97
    • (2015) ISME J , vol.9 , pp. 90-100
    • Eren, A.M.1    Sogin, M.L.2    Morrison, H.G.3    Vineis, J.H.4    Fisher, J.C.5    Newton, R.J.6
  • 5
    • 33646876613 scopus 로고    scopus 로고
    • Entropy and diversity
    • Jost, L. (2006). Entropy and diversity. Oikos 113, 363-375. doi: 10.1111/j.2006.0030-1299.14714.x
    • (2006) Oikos , vol.113 , pp. 363-375
    • Jost, L.1
  • 6
    • 84948695633 scopus 로고    scopus 로고
    • Chemical dispersants can suppress the activity of natural oil-degrading microorganisms
    • Kleindienst, S., Seidel, M., Ziervogel, K., Grim, S., Loftis, K., Harrison, S., et al. (2015). Chemical dispersants can suppress the activity of natural oil-degrading microorganisms. Proc. Natl. Acad. Sci. U.S.A. 112, 14900-14905. doi: 10.1073/pnas.1507380112
    • (2015) Proc. Natl. Acad. Sci. U.S.A , vol.112 , pp. 14900-14905
    • Kleindienst, S.1    Seidel, M.2    Ziervogel, K.3    Grim, S.4    Loftis, K.5    Harrison, S.6
  • 7
    • 84878548639 scopus 로고    scopus 로고
    • Surprisingly extensive mixed phylogenetic and ecological signals among bacterial operational taxonomic units
    • Koeppel, A. F., and Wu, M. (2013). Surprisingly extensive mixed phylogenetic and ecological signals among bacterial operational taxonomic units. Nucleic Acids Res. 41, 5175-5188. doi: 10.1093/nar/gkt241
    • (2013) Nucleic Acids Res , vol.41 , pp. 5175-5188
    • Koeppel, A.F.1    Wu, M.2
  • 8
    • 84951008522 scopus 로고    scopus 로고
    • Swarm v2: highly-scalable and high-resolution amplicon clustering
    • Mahé, F., Rognes, T., Quince, C., de Vargas, C., and Dunthorn, M. (2015). Swarm v2: highly-scalable and high-resolution amplicon clustering. Peer J. 3:e1420. doi: 10.7717/peerj.1420
    • (2015) Peer J , vol.3
    • Mahé, F.1    Rognes, T.2    Quince, C.3    de Vargas, C.4    Dunthorn, M.5
  • 10
    • 84922711703 scopus 로고    scopus 로고
    • Discovering new indicators of fecal pollution
    • McLellan, S. L., and Eren, A. M. (2014). Discovering new indicators of fecal pollution. Trends Microbiol. 22, 697-706. doi: 10.1016/j.tim.2014.08.002
    • (2014) Trends Microbiol , vol.22 , pp. 697-706
    • McLellan, S.L.1    Eren, A.M.2
  • 11
    • 85016922856 scopus 로고    scopus 로고
    • A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity
    • Nguyen, N.-P., Warnow, T., Pop, M., and White, B. (2016). A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity. npj Biofilms Microbiomes 2, 16004. doi: 10.1038/npjbiofilms.2016.4
    • (2016) npj Biofilms Microbiomes , vol.2 , pp. 16004
    • Nguyen, N.-P.1    Warnow, T.2    Pop, M.3    White, B.4
  • 12
    • 84886937146 scopus 로고    scopus 로고
    • Distribution-based clustering: using ecology to refine the operational taxonomic unit
    • Preheim, S. P., Perrotta, A. R., Martin-Platero, A. M., Gupta, A., and Alm, E. J. (2013). Distribution-based clustering: using ecology to refine the operational taxonomic unit. Appl. Environ. Microbiol. 79, 6593-6603. doi: 10.1128/AEM.00342-13
    • (2013) Appl. Environ. Microbiol , vol.79 , pp. 6593-6603
    • Preheim, S.P.1    Perrotta, A.R.2    Martin-Platero, A.M.3    Gupta, A.4    Alm, E.J.5
  • 13
    • 84901263103 scopus 로고    scopus 로고
    • Host-specificity among abundant and rare taxa in the sponge microbiome
    • Reveillaud, J., Maignien, L., Eren, A. M., Huber, J. A., Apprill, A., Sogin, M. L., et al. (2014). Host-specificity among abundant and rare taxa in the sponge microbiome. ISME J. 8, 1198-1209. doi: 10.1038/ismej.2013.227
    • (2014) ISME J , vol.8 , pp. 1198-1209
    • Reveillaud, J.1    Maignien, L.2    Eren, A.M.3    Huber, J.A.4    Apprill, A.5    Sogin, M.L.6
  • 14
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • Shannon, C. E. (1948). A mathematical theory of communication. Bell Syst. Technol. J. 27, 379-423. doi: 10.1002/j.1538-7305.1948.tb01338.x
    • (1948) Bell Syst. Technol. J , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 15
    • 84923545661 scopus 로고    scopus 로고
    • Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution
    • Tikhonov, M., Leach, R. W., and Wingreen, N. S. (2015). Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution. ISME J. 9, 68-80. doi: 10.1038/ismej.2014.117
    • (2015) ISME J , vol.9 , pp. 68-80
    • Tikhonov, M.1    Leach, R.W.2    Wingreen, N.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.