Marker-assisted introgression (MAI) of almond genes into the peach background: a fast method to mine and integrate novel variation from exotic sources in long intergeneration species

Tree Genetics and Genomes

Volumn 12, Issue 5, 2016, Pages

  Serra, Octávio ^a   Donoso, José Manuel ^a,b   Picañol, Roger ^a,c   Batlle, Ignasi ^a   Howad, Werner ^a   Eduardo, Iban ^a   Arús, Pere ^a  

^a IRTA   (Spain)

^b INSTITUTO DE INVESTIGACIONES AGROPECUARIAS   (Chile)

^c Rijk Zwaan Zaadteelt en Zaadhandel BV   (Netherlands)

Author keywords

Fast track breeding; Introgression lines; MAI; Near isogenic lines; Prunus dulcis; Prunus persica

Indexed keywords

EID: 84987858773     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-016-1056-1     Document Type: Article

References (46)

1. Allard RW (1961) Principles of plant breeding. J Willey and Sons Ltd, London, New York
2. Aranzana MJ, Carbó J, Arús P (2003) Microsatellite variability in peach [Prunus persica (L) Batsch.]: cultivar identification, marker mutation, pedigree inferences and population structure. Theor Appl Genet 106:1341–1352
3. Aranzana MJ, Illa E, Howad W, Arús P (2012) A first insight into peach [Prunus persica (L.) Batsch] SNP variability. Tree Genet Genomes 8:1359–1369
4. Arús P, Yamamoto T, Dirlewanger E, Abbott AG (2005) Synteny in the Rosaceae. In: Janick J (ed) Plant breeding reviews, vol 27. Wiley, Hoboken, pp. 175–211
5. Asma BM (2008) Determination of pollen viability, germination ratios and morphology of eight apricot genotypes. Afr J Biotechnol 7:4269–4273
6. Bai Y, Huang CC, van der Hulst R, Meijer-Dekens F, Bonnema G, Lindhout P (2003) QTLs for tomato powdery mildew resistance (Oidium lycopersici) in Lycopersicon parviflorum G1.1601 co-localize with two qualitative powdery mildew resistance genes. Mol Plant Microbe In 16:169–176
7. Batlle I, Fontich C, Lozano L, Iglesias I, Reig G, Alegre S, Echeverría G, de Herralde F, Claveria E, Dolcet-Sanjuan R, Carbó J, Bonany J, Maillard A, Maillard L (2012) The peach breeding programme IRTA-ASF: aiming for high fruit quality. Acta Hortic 940:75–78
8. Bouhadida M, Martín JP, Eremin G, Pinochet J, Moreno MA, Gogorcena Y (2007) Chloroplast DNA diversity in Prunus and its implications on genetic relationships. J Amer Soc Hort Sci 132:670–679
9. Bus VGM, Laurens FND, Van deWeg WE, Rusholme RL, Rikkerink EHA, Gardiner SE, Bassett HCM, Plummer KM (2005) The Vh8 locus of a new gene-for-gene interaction between Venturia inaequalis and the wild apple Malus sieversii is closely linked to the Vh2 locus in Malus pumila R12740-7A. New Phytol 166:1035–1049
10. Byrne DH (1990) Isozyme variability in four diploid stone fruits compared with other woody perennial plants. J Hered 81:68–71
11. Byrne DH, Raseira MB, Bassi D, Piagnani MC, Gasic K, Reighard GL, Moreno MA, Pérez S (2012) Peach. In: Badenes ML, Byrne DH (eds) Fruit breeding (handbook of plant breeding). Springer, New York, pp. 513–569
12. Dirlewanger E, Graziano E, Joobeur T, Garriga-Calderé T, Cosson P, Howad W, Arús P (2004) Comparative mapping and marker assisted selection in Rosaceae fruit crops. Proc Natl Acad Sci U S A 101:9891–9896
13. Donoso JM, Picañol R, Eduardo I, BatlIe I, Howad W, Aranzana MJ, Arús P (2015) High-density mapping suggests a cytoplasmic male sterility system with two restorer factors in almond x peach progenies. Hortic Res 2:15016
14. Donoso JM, Picañol R, Serra O, Howad W, Alegre S, Arús P, Eduardo I (2016) Exploring almond genetic variability useful for peach improvement: mapping major genes and QTLs in two inter-specific almond × peach populations. Mol Breeding 36:16
15. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13–15
16. Eduardo I, Arús P, Monforte AJ (2005) Development of a genomic library of near isogenic lines (NILs) in melon (Cucumis melo L.) from the exotic accession PI161375. Theor Appl Genet 112:139–148
17. Eshed Y, Zamir D (1994) Introgressions from Lycopersicon pennellii can improve the soluble-solids yield of tomato hybrids. Theor Appl Genet 88:891–897
18. Eshed Y, Zamir D (1995) An introgression-line population of Lycopersicon pennelli in the cultivated tomato enables the identification and fine mapping of yield-associated QTLs. Genetics 141:1147–1162
19. Esmenjaud D, Voisin R, Van Ghelder C, Bosselut N, Lafargue B, Di Vito M, Dirlewanger E, Poessel JL, Kleinhentz M (2009) Genetic dissection of resistance to root-knot nematodes Meloidogyne spp. in plum, peach, almond, and apricot from various segregating interspecific Prunus progenies. Tree Genet Genomes 5:279–289
20. Faust M, Timon B (1995) Origen and dissemination of peach. Hortic Rev 17:331–379
21. Fletcher R, Mullen JL, Yoder S, Bauerle WL, Reuning G, Sen S, Meyer E, Juenger T, McKay JK (2013) Development of a next-generation NIL library in Arabidopsis thaliana for dissecting complex traits. BMC Genomics 14:655–668
22. Foolad MR, Arulsekar S, Becerra V, Bliss FA (1995) A genetic map of Prunus based on an intraspecific cross between peach and almond. Theor Appl Genet 91:262–269
23. Foulongne M, Pascal T, Pfeiffer F, Kervella J (2002) Introgression of a polygenic resistance to powdery mildew from a wild species Prunus davidiana into peach [Prunus persica (L.) Batsch], a case study of marker assisted selection in fruit tree. Acta Hortic 592:259–265
24. Frary A, Doganlar S, Frampton A, Fulton TM, Uhlig J, Yates HE, Tanksley SD (2003) Fine mapping of quantitative trait loci for improved fruit characteristics from Lycopersicon chmielewskii chromosome 1. Genome 46:235–243
25. Fulton TM, Grandillo S, Beck-Bunn T, Fridman E, Frampton A, Lopez J, Petriard V, Uhlig J, Zamir D, Tanksley SD (2000) Advanced backcross QTL analysis of a Lycopersicon esculentum × Lycopersicon parviflorum cross. Theor Appl Genet 100:1025–1042
26. Gebhardt C, Ritter E, Barone A, Debener T, Walkemeier B, Schachtschabel U, Kaufmann H, Thompson RD, Bonierbale MW, Ganal MW, Tanksley SD, Salamini F (1991) RFLP maps of potato and their alignment with the homoeologous tomato genome. Theor Appl Genet 83:49–57
27. Germanà MA (2006) Double haploid production in fruit trees. Plant Cell Tiss Org 86:131–146
28. Gessler C, Pertot I (2012) Vf scab resistance in Malus. Trees 26:95–108
29. Gómez-Aparisi J, Carrera M, Felipe AJ, Socias i Company R (2001) ‘Garnem’, ‘Monegro’ and ‘Felinem’: new almond × peach hybrid rootstocks, nematode resistant and red leaved for stone fruits. ITEA-Inf Tec Econ Ag 97:282–288
30. Grandillo S, Tanksley SD, Zamir D (2007) Exploitation of natural biodiversity through genomics. In: Varshney RK, Tuberosa R (eds) Genomics assisted crop improvement: vol I genomics approaches and platforms. Springer, Dordrecht, pp. 121–150
31. Griffiths P, Scott J (2001) Inheritance and linkage of tomato mottle virus resistance genes derived from Lycopersicon chilense accession LA 1932. J Amer Soc Hort Sci 126:462–467
32. 2 progeny. Theor Appl Genet 97:1034–1041
33. Koumproglou R, Wilkes TM, Townson P, Wang XY, Beynon J, Pooni HS, Newbury HJ, Kearsey MJ (2002) STAIRS: a new genetic resource for functional genomic studies of Arabidopsis. Plant J 31:355–364
34. Li X, Meng X, Jia H, Yu M, Ma R, Wang L, Cao K, Shen Z, Niu L, Tian J, Chen M, Xie M, Arús P, Gao Z, Aranzana MJ (2013) Peach genetic resources: diversity, population structure and linkage disequilibrium. BMC Genet 14:84
35. Micheletti D, Dettori MT, Micali S, Aramini V, Pacheco I, da Silva C, Foschi S, Banchi E, Barreneche T, Quilot-Turion B, Lambert P, Pascal T, Iglesias I, Carbó J, Wang LR, Ma RJ, Li XW, Gao ZS, Nazzicari N, Troggio M, Bassi B, Rossini L, Verde I, Laurens F, Arús P, Aranzana MJ (2015) Whole-genome analysis of diversity and SNP-major gene association in peach germplasm. PLoS One 10(9):e0136803
36. Mnejja M, Garcia-Mas J, Audergon JM, Arús P (2010) Prunus microsatellite marker transferability across rosaceous crops. Tree Genet Genomes 6:689–700
37. Monforte AJ, Tanksley SD (2000) Development of a set of near isogenic and backcross recombinant inbred lines containing most of the Lycopersicon hirsutum genome in a L. esculentum genetic background: a tool for gene mapping and gene discovery. Genome 43:803–813
38. Pestsova EG, Borner A, Roder MS (2001) Development of a set of Triticum aestivum–Aegilops tauschii introgression lines. Hereditas 135(2–3):139–143
39. Tanksley SD, McCouch SR (1997) Seed banks and molecular maps: unlocking genetic potential from the wild. Science 277:1063–1066
40. Tanksley SD, Nelson JC (1996) Advanced backcross QTL analysis:a method for the simultaneous discovery and transfer of valuable QTLs from unadapted germplasm into elite breeding lines. Theor Appl Genet 92:191–203
41. Tanksley SD, Medina-Filho H, Rick CM (1981) Effect of isozyme selection on metric characters in an interspecific backcross of tomato: basis for an early screening procedure. Theor Appl Genet 60:291–296
42. Tanksley SD, Young ND, Paterson AH, Bonierbale MW (1989) RFLP mapping in plant breeding: new tools for an old science. Nat Biotechnol 7:257–264
43. Tanksley SD, Ganal MW, Prince JP, de Vicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB, Messeguer R, Miller JC, Miller L, Paterson AHD, Pineda O, Röder MS, Wing RA, Wu W, Young ND (1992) High density molecular linkage maps of the tomato and potato genomes. Genetics 132:1141–1160
44. Urrutia M, Bonet J, Arús P, Monfort A (2015) A near-isogenic line (NIL) collection in diploid strawberry and its use in the genetic analysis of morphologic, phenological and nutritional characters. Theor Appl Genet 128:1261–1275
45. Verlaan MG, Hutton SF, Ibrahem RM, Kormelink R, Visser RGF, Scott JW, Edwards JD, Bai Y (2013) The tomato yellow leaf curl virus resistance genes Ty-1 and Ty-3 are allelic and code for DFDGD-class RNA–dependent RNA polymerases. PLoS Genet 9(3):e1003399
46. Zamir D, Ekstein Michelson I, Zakay Y, Navot N, Zeidan M, et al. (1994) Mapping and introgression of a tomato yellow leaf curl virus tolerance gene, Ty-1. Theor Appl Genet 88:141–146