-
1
-
-
76349116296
-
Archaeal ammonia oxidizers and nirS-type denitrifiers dominate sediment nitrifying and denitrifying populations in a subtropical macrotidal estuary
-
Abell, G. C. J., Revill, A. T., Smith, C., Bissett, A. P., Volkman, J. K., and Robert, S. S. (2010). Archaeal ammonia oxidizers and nirS-type denitrifiers dominate sediment nitrifying and denitrifying populations in a subtropical macrotidal estuary. ISME J. 4, 286-300. doi: 10.1038/ismej.2009.105
-
(2010)
ISME J.
, vol.4
, pp. 286-300
-
-
Abell, G.C.J.1
Revill, A.T.2
Smith, C.3
Bissett, A.P.4
Volkman, J.K.5
Robert, S.S.6
-
2
-
-
84892905133
-
Predicting microbial nitrate reduction pathways in coastal sediments
-
Algar, C. K., and Vallino, J. J. (2014). Predicting microbial nitrate reduction pathways in coastal sediments. Aquat. Microb. Ecol. 71, 223-238. doi: 10.3354/ame01678
-
(2014)
Aquat. Microb. Ecol.
, vol.71
, pp. 223-238
-
-
Algar, C.K.1
Vallino, J.J.2
-
3
-
-
0037130141
-
Dissimilatory nitrate reduction to ammonium (DNRA) as a nitrogen link, versus denitrification as a sink in a shallow estuary (Laguna Madre/Baffin Bay, Texas)
-
An, S., and Gardner, W. S. (2002). Dissimilatory nitrate reduction to ammonium (DNRA) as a nitrogen link, versus denitrification as a sink in a shallow estuary (Laguna Madre/Baffin Bay, Texas). Mar. Ecol. Prog. Ser. 237, 41-50. doi: 10.3354/meps237041
-
(2002)
Mar. Ecol. Prog. Ser.
, vol.237
, pp. 41-50
-
-
An, S.1
Gardner, W.S.2
-
4
-
-
0035137958
-
Enhancement of coupled nitrification-denitrification by benthic photosynthesis in shallow estuarine sediments
-
An, S., and Joye, S. B. (2001). Enhancement of coupled nitrification-denitrification by benthic photosynthesis in shallow estuarine sediments. Limnol. Oceanogr. 46, 62-74. doi: 10.4319/lo.2001.46.1.0062
-
(2001)
Limnol. Oceanogr.
, vol.46
, pp. 62-74
-
-
An, S.1
Joye, S.B.2
-
5
-
-
0016949502
-
inhibition of nitrification by ammonia and nitrous-acid
-
Anthonisen, A. C., Loehr, R. C., Prakasam, T. B. S., and Srinath, E. G. (1976). inhibition of nitrification by ammonia and nitrous-acid. J. Water Pollut. Control Fed. 5, 835-852.
-
(1976)
J. Water Pollut. Control Fed.
, vol.5
, pp. 835-852
-
-
Anthonisen, A.C.1
Loehr, R.C.2
Prakasam, T.B.S.3
Srinath, E.G.4
-
6
-
-
84877588601
-
Controls on nitrogen loss processes in chesapeake bay sediments
-
Babbin, A. R., and Ward, B. B. (2013). Controls on nitrogen loss processes in chesapeake bay sediments. Environ. Sci. Technol. 47, 4189-4196. doi: 10.1021/es304842r
-
(2013)
Environ. Sci. Technol.
, vol.47
, pp. 4189-4196
-
-
Babbin, A.R.1
Ward, B.B.2
-
7
-
-
33845520639
-
Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: bahía del Tóbari, Mexico
-
Beman, J. M., and Francis, C. A. (2006). Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: bahía del Tóbari, Mexico. Appl. Environ. Microbiol. 72, 7767-7777. doi: 10.1128/AEM.00946-06
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 7767-7777
-
-
Beman, J.M.1
Francis, C.A.2
-
8
-
-
42049122119
-
Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California
-
Beman, J. M., Popp, B. N., and Francis, C. A. (2008). Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J. 2, 429-441. doi: 10.1038/ismej.2007.118
-
(2008)
ISME J.
, vol.2
, pp. 429-441
-
-
Beman, J.M.1
Popp, B.N.2
Francis, C.A.3
-
9
-
-
76649087327
-
Abundance of ammonia-oxidizing archaea and bacteria along an estuarine salinity gradient in relation to potential nitrification rates
-
Bernhard, A. E., Landry, Z. C., Blevins, A., la Torre de, J. R., Giblin, A. E., and Stahl, D. A. (2010). Abundance of ammonia-oxidizing archaea and bacteria along an estuarine salinity gradient in relation to potential nitrification rates. Appl. Environ. Microbiol. 76, 1285-1289. doi: 10.1128/AEM.02018-09
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 1285-1289
-
-
Bernhard, A.E.1
Landry, Z.C.2
Blevins, A.3
la Torre de, J.R.4
Giblin, A.E.5
Stahl, D.A.6
-
10
-
-
34248562001
-
Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient
-
Bernhard, A. E., Tucker, J., Giblin, A. E., and Stahl, D. A. (2007). Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient. Environ. Microbiol. 9, 1439-1447. doi: 10.1111/j.1462-2920.2007.01260.x
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 1439-1447
-
-
Bernhard, A.E.1
Tucker, J.2
Giblin, A.E.3
Stahl, D.A.4
-
11
-
-
84890261691
-
Functional gene pyrosequencing and network analysis: an approach to examine the response of denitrifying bacteria to increased nitrogen supply in salt marsh sediments
-
Bowen, J. L., Byrnes, J. E. K., Weisman, D., and Colaneri, C. (2013). Functional gene pyrosequencing and network analysis: an approach to examine the response of denitrifying bacteria to increased nitrogen supply in salt marsh sediments. Front. Microbiol. 4:342. doi: 10.3389/fmicb.2013.00342
-
(2013)
Front. Microbiol.
, vol.4
, pp. 342
-
-
Bowen, J.L.1
Byrnes, J.E.K.2
Weisman, D.3
Colaneri, C.4
-
12
-
-
0034884839
-
The ecological effects of urbanization of coastal watersheds: historical increases in nitrogen loads and eutrophication of Waquoit Bay estuaries
-
Bowen, J. L., and Valiela, I. (2001). The ecological effects of urbanization of coastal watersheds: historical increases in nitrogen loads and eutrophication of Waquoit Bay estuaries. Can. J. Fish. Aquat. Sci. 58, 1489-1500. doi: 10.1139/f01-094
-
(2001)
Can. J. Fish. Aquat. Sci.
, vol.58
, pp. 1489-1500
-
-
Bowen, J.L.1
Valiela, I.2
-
13
-
-
0031687820
-
Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples
-
Braker, G., Fesefeldt, A., and Witzel, K.-P. (1998). Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl. Environ. Microbiol. 64, 3769-3775.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3769-3775
-
-
Braker, G.1
Fesefeldt, A.2
Witzel, K.-P.3
-
14
-
-
0024848871
-
Nanogram nitrite and nitrate determination in environmental and biological-materials by vanadium- (III) reduction with chemi-luminescence detection
-
Braman, R. S., and Hendrix, S. A. (1989). Nanogram nitrite and nitrate determination in environmental and biological-materials by vanadium- (III) reduction with chemi-luminescence detection. Anal. Chem. 61, 2715-2718. doi: 10.1021/ac00199a007
-
(1989)
Anal. Chem.
, vol.61
, pp. 2715-2718
-
-
Braman, R.S.1
Hendrix, S.A.2
-
15
-
-
84872720805
-
'Estuarine and coastal sediments - coupled biogeochemical cycling, '
-
eds E. Wolanski and D. McLusky (Waltham, MA: Academic Press)
-
Burdige, D. J. (2012). "Estuarine and coastal sediments - coupled biogeochemical cycling". in Treatise on Estuarine and Coastal Science, eds E. Wolanski and D. McLusky (Waltham, MA: Academic Press), 279-316.
-
(2012)
Treatise on Estuarine and Coastal Science
, pp. 279-316
-
-
Burdige, D.J.1
-
16
-
-
33847682276
-
Have we overemphasized the role of denitrification in aquatic ecosystems?
-
Burgin, A. J., and Hamilton, S. K. (2007). Have we overemphasized the role of denitrification in aquatic ecosystems? A review of nitrate removal pathways. Front. Ecol. Environ. 5:89-96. doi: 10.1890/1540-9295(2007)5[89:HWOTRO]2.0.CO;2
-
(2007)
A review of nitrate removal pathways. Front. Ecol. Environ.
, vol.5
, pp. 89-96
-
-
Burgin, A.J.1
Hamilton, S.K.2
-
17
-
-
35948999268
-
Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia
-
Caffrey, J. M., Bano, N., Kalanetra, K., and Hollibaugh, J. T. (2007). Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. ISME J. 1, 660-662. doi: 10.1038/ismej.2007.79
-
(2007)
ISME J.
, vol.1
, pp. 660-662
-
-
Caffrey, J.M.1
Bano, N.2
Kalanetra, K.3
Hollibaugh, J.T.4
-
18
-
-
84871364582
-
Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient
-
Campbell, B. J., and Kirchman, D. L. (2012). Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient. ISME J. 7, 210-220. doi: 10.1038/ismej.2012.93
-
(2012)
ISME J.
, vol.7
, pp. 210-220
-
-
Campbell, B.J.1
Kirchman, D.L.2
-
19
-
-
79961239913
-
Activity of abundant and rare bacteria in a coastal ocean
-
Campbell, B. J., Yu, L., Heidelberg, J. F., and Kirchman, D. L. (2011). Activity of abundant and rare bacteria in a coastal ocean. Proc. Natl. Acad. Sci. U.S.A. 108, 12776-12781. doi: 10.1073/pnas.1101405108
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 12776-12781
-
-
Campbell, B.J.1
Yu, L.2
Heidelberg, J.F.3
Kirchman, D.L.4
-
20
-
-
0035951368
-
Our evolving conceptual model of the coastal eutrophication problem
-
Cloern, J. E. (2001). Our evolving conceptual model of the coastal eutrophication problem. Mar. Ecol. Prog. Ser. 210, 223-253. doi: 10.3354/meps210223
-
(2001)
Mar. Ecol. Prog. Ser.
, vol.210
, pp. 223-253
-
-
Cloern, J.E.1
-
21
-
-
18144382963
-
Anaerobic ammonium oxidation (anammox) in the marine environment
-
Dalsgaard, T., Thamdrup, B., and Canfield, D. E. (2005). Anaerobic ammonium oxidation (anammox) in the marine environment. Res. Microbiol. 156, 457-464. doi: 10.1016/j.resmic.2005.01.011
-
(2005)
Res. Microbiol.
, vol.156
, pp. 457-464
-
-
Dalsgaard, T.1
Thamdrup, B.2
Canfield, D.E.3
-
22
-
-
49649095625
-
Spreading dead zones and consequences for marine ecosystems
-
Diaz, R. J., and Rosenberg, R. (2008). Spreading dead zones and consequences for marine ecosystems. Science 321, 926-929. doi: 10.1126/science.1156401
-
(2008)
Science
, vol.321
, pp. 926-929
-
-
Diaz, R.J.1
Rosenberg, R.2
-
23
-
-
26844541457
-
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
-
Francis, C. A., Roberts, K. J., Beman, J. M., Santoro, A. E., and Oakley, B. B. (2005). Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc. Natl. Acad. Sci. U.S.A. 102, 14683-14688. doi: 10.1073/pnas.0506625102
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 14683-14688
-
-
Francis, C.A.1
Roberts, K.J.2
Beman, J.M.3
Santoro, A.E.4
Oakley, B.B.5
-
24
-
-
41649114407
-
Microbial community gene expression in ocean surface waters
-
Frias-Lopez, J., Shi, Y., Tyson, G. W., Coleman, M. L., Schuster, S. C., Chisholm, S. W., et al. (2008). Microbial community gene expression in ocean surface waters. Proc. Natl. Acad. Sci. U.S.A. 105, 3805-3810. doi: 10.1073/pnas.0708897105
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 3805-3810
-
-
Frias-Lopez, J.1
Shi, Y.2
Tyson, G.W.3
Coleman, M.L.4
Schuster, S.C.5
Chisholm, S.W.6
-
25
-
-
0037389818
-
The nitrogen cascade
-
Galloway, J. N., Aber, J. D., Erisman, J. W., Seitzinger, S. P., Howarth, R. W., Cowling, E. B., et al. (2003). The nitrogen cascade. Bioscience 53, 341-356. doi: 10.1641/0006-3568(2003)053[0341:TNC]2.0.CO;2
-
(2003)
Bioscience
, vol.53
, pp. 341-356
-
-
Galloway, J.N.1
Aber, J.D.2
Erisman, J.W.3
Seitzinger, S.P.4
Howarth, R.W.5
Cowling, E.B.6
-
26
-
-
0020219103
-
A chemi-luminescent technique for the determination of nanomolar concentrations of nitrate and nitrite in seawater
-
Garside, C. (1982). A chemi-luminescent technique for the determination of nanomolar concentrations of nitrate and nitrite in seawater. Mar. Chem. 11, 159-167. doi: 10.1016/0304-4203(82)90039-1
-
(1982)
Mar. Chem.
, vol.11
, pp. 159-167
-
-
Garside, C.1
-
27
-
-
84881519768
-
The importance of dissimilatory nitrate reduction to ammonium (DNRA) in the nitrogen cycle of coastal ecosystems
-
Giblin, A. E., Tobias, C. R., Song, B., Weston, N., Banta, G. T., and Rivera-Monroy, V. H. (2013). The importance of dissimilatory nitrate reduction to ammonium (DNRA) in the nitrogen cycle of coastal ecosystems. Oceanography 26, 124-131. doi: 10.5670/oceanog.2013.54
-
(2013)
Oceanography
, vol.26
, pp. 124-131
-
-
Giblin, A.E.1
Tobias, C.R.2
Song, B.3
Weston, N.4
Banta, G.T.5
Rivera-Monroy, V.H.6
-
28
-
-
0032934360
-
Kinetics of nirS expression (cytochrome cd1 nitrite reductase)in Pseudomonas stutzeri during the transition from aerobic respiration to denitrification: evidence for a denitrification-specific nitrate-and nitrite-responsive regulatory system
-
Härtig, E., and Zumft, W. G. (1999). Kinetics of nirS expression (cytochrome cd1 nitrite reductase)in Pseudomonas stutzeri during the transition from aerobic respiration to denitrification: evidence for a denitrification-specific nitrate-and nitrite-responsive regulatory system. J. Bacteriol. 181, 161-166.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 161-166
-
-
Härtig, E.1
Zumft, W.G.2
-
29
-
-
79551620897
-
Coupled biogeochemical cycles: eutrophication and hypoxia in temperate estuaries and coastal marine ecosystems
-
Howarth, R., Chan, F., Conley, D. J., Garnier, J., Doney, S. C., Marino, R., et al. (2011). Coupled biogeochemical cycles: eutrophication and hypoxia in temperate estuaries and coastal marine ecosystems. Front. Ecol. Environ. 9:8. doi: 10.1890/100008
-
(2011)
Front. Ecol. Environ.
, vol.9
, pp. 8
-
-
Howarth, R.1
Chan, F.2
Conley, D.J.3
Garnier, J.4
Doney, S.C.5
Marino, R.6
-
30
-
-
84988147377
-
The coupling of nitrification and denitrification in two estuarine sediments
-
Jenkins, M. C., and Kemp, W. M. (1984). The coupling of nitrification and denitrification in two estuarine sediments. Limnol. Oceanogr. 29, 609-619. doi: 10.4319/lo.1984.29.3.0609
-
(1984)
Limnol. Oceanogr.
, vol.29
, pp. 609-619
-
-
Jenkins, M.C.1
Kemp, W.M.2
-
31
-
-
67649939034
-
Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil
-
Jia, Z., and Conrad, R. (2009). Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. Environ. Microbiol. 11, 1658-1671. doi: 10.1111/j.1462-2920.2009.01891.x
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 1658-1671
-
-
Jia, Z.1
Conrad, R.2
-
32
-
-
0028972895
-
Influence of sulfide inhibtion of nitrification on nitrogen regeneration in sediments
-
Joye, S. B., and Hollibaugh, J. T. (1995). Influence of sulfide inhibtion of nitrification on nitrogen regeneration in sediments. Science 270, 623-625. doi: 10.1126/science.270.5236.623
-
(1995)
Science
, vol.270
, pp. 623-625
-
-
Joye, S.B.1
Hollibaugh, J.T.2
-
33
-
-
80455122803
-
Molecular mechanism of anaerobic ammonium oxidation
-
Kartal, B., Maalcke, W. J., de Almeida, N. M., Cirpus, I., Gloerich, J., Geerts, W., et al. (2011). Molecular mechanism of anaerobic ammonium oxidation. Nature 479, 127-132. doi: 10.1038/nature10453
-
(2011)
Nature
, vol.479
, pp. 127-132
-
-
Kartal, B.1
Maalcke, W.J.2
de Almeida, N.M.3
Cirpus, I.4
Gloerich, J.5
Geerts, W.6
-
34
-
-
84862024684
-
Unlocking the potential of metagenomics through replicated experimental design
-
Knight, R., Jansson, J., Field, D., Fierer, N., Desai, N., Fuhrman, J. A., et al. (2012). Unlocking the potential of metagenomics through replicated experimental design. Nat. Biotechnol. 30, 513-520. doi: 10.1038/nbt.2235
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 513-520
-
-
Knight, R.1
Jansson, J.2
Field, D.3
Fierer, N.4
Desai, N.5
Fuhrman, J.A.6
-
35
-
-
60449094818
-
Anammox in tidal marsh sediments: the role of salinity, nitrogen loading, and marsh vegetation
-
Koop Jakobsen, K., and Giblin, A. E. (2009). Anammox in tidal marsh sediments: the role of salinity, nitrogen loading, and marsh vegetation. Estuar. Coasts 32, 238-245. doi: 10.1007/s12237-008-9131-y
-
(2009)
Estuar. Coasts
, vol.32
, pp. 238-245
-
-
Koop Jakobsen, K.1
Giblin, A.E.2
-
36
-
-
0000046862
-
'Determination of nutrients, '
-
eds K. Grasshoff, M. Ehrhardt, and K. Kremling (Weinheim: Verlag Chemie)
-
Koroleff, F. (1983). "Determination of nutrients". in Methods of Seawater Analysis, eds K. Grasshoff, M. Ehrhardt, and K. Kremling (Weinheim: Verlag Chemie), 162-173.
-
(1983)
Methods of Seawater Analysis
, pp. 162-173
-
-
Koroleff, F.1
-
37
-
-
84892638154
-
Impacts of bioturbation on temporal variation in bacterial and archaeal nitrogen-cycling gene abundance in coastal sediments
-
Laverock, B., Tait, K., Gilbert, J. A., Osborn, A. M., and Widdicombe, S. (2013). Impacts of bioturbation on temporal variation in bacterial and archaeal nitrogen-cycling gene abundance in coastal sediments. Environ. Microbiol. Rep. 6, 113-121. doi: 10.1111/1758-2229.12115
-
(2013)
Environ. Microbiol. Rep.
, vol.6
, pp. 113-121
-
-
Laverock, B.1
Tait, K.2
Gilbert, J.A.3
Osborn, A.M.4
Widdicombe, S.5
-
39
-
-
78650008729
-
Linking bacterial identities and ecosystem processes: can "omic" analyses be more than the sum of their parts?
-
Morales, S. E., and Holben, W. E. (2010). Linking bacterial identities and ecosystem processes: can "omic" analyses be more than the sum of their parts? FEMS Microbiol. Ecol. 75, 2-16. doi: 10.1111/j.1574-6941.2010.00938.x
-
(2010)
FEMS Microbiol. Ecol.
, vol.75
, pp. 2-16
-
-
Morales, S.E.1
Holben, W.E.2
-
40
-
-
84872965253
-
Sizing up metatranscriptomics
-
Moran, M. A., Satinksy, B., Gifford, S. M., Luo, H., Rivers, A., Chan, L.-K., et al. (2013). Sizing up metatranscriptomics. ISME J. 7, 237-243. doi: 10.1038/ismej.2012.94
-
(2013)
ISME J.
, vol.7
, pp. 237-243
-
-
Moran, M.A.1
Satinksy, B.2
Gifford, S.M.3
Luo, H.4
Rivers, A.5
Chan, L.-K.6
-
41
-
-
52949134066
-
Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary
-
Mosier, A., and Francis, C. (2008). Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary. Environ. Microbiol. 10, 3002-3016. doi: 10.1111/j.1462-2920.2008.01764.x
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 3002-3016
-
-
Mosier, A.1
Francis, C.2
-
42
-
-
80053642618
-
Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers
-
Mußmann, M., Brito, I., Pitcher, A., Sinninghe Damasté, J. S., Hatzenpichler, R., Richter, A., et al. (2011). Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers. Proc. Natl. Acad. Sci. U.S.A. 108, 16771-16776. doi: 10.1073/pnas.1106427108
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 16771-16776
-
-
Mußmann, M.1
Brito, I.2
Pitcher, A.3
Sinninghe Damasté, J.S.4
Hatzenpichler, R.5
Richter, A.6
-
43
-
-
67649228978
-
Widespread occurrence of the anammox reaction in estuarine sediments
-
Nicholls, J. C., and Trimmer, M. (2009). Widespread occurrence of the anammox reaction in estuarine sediments. Aquat. Microb. Ecol. 55, 105-113. doi: 10.3354/ame01285
-
(2009)
Aquat. Microb. Ecol.
, vol.55
, pp. 105-113
-
-
Nicholls, J.C.1
Trimmer, M.2
-
44
-
-
0036793715
-
Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA
-
Nogales, B., Timmis, K. N., and Nedwell, D. B. (2002). Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Appl. Environ. Microbiol. 35, 275-298. doi: 10.1128/AEM.68.10.5017-5025.2002
-
(2002)
Appl. Environ. Microbiol.
, vol.35
, pp. 275-298
-
-
Nogales, B.1
Timmis, K.N.2
Nedwell, D.B.3
-
45
-
-
84873455505
-
Pattern and synchrony of gene expression among sympatric marine microbial populations
-
Ottesen, E. A., Young, C. R., Eppley, J. M., Ryan, J. P., Chavez, F. P., Scholin, C. A., et al. (2013). Pattern and synchrony of gene expression among sympatric marine microbial populations. Proc. Natl. Acad. Sci.U.S.A. 110, E488-E497. doi: 10.1073/pnas.1222099110
-
(2013)
Proc. Natl. Acad. Sci.U.S.A.
, vol.110
, pp. E488-E497
-
-
Ottesen, E.A.1
Young, C.R.2
Eppley, J.M.3
Ryan, J.P.4
Chavez, F.P.5
Scholin, C.A.6
-
46
-
-
64749103291
-
Modeling kinetics of ammonia oxidation under simultaneious inhibition by free ammonia and free nitrous acid
-
Park, S., and Bae, W. (2009). Modeling kinetics of ammonia oxidation under simultaneious inhibition by free ammonia and free nitrous acid. Process Biochem. 6, 631-640. doi: 10.1016/j.procbio.2009.02.002
-
(2009)
Process Biochem.
, vol.6
, pp. 631-640
-
-
Park, S.1
Bae, W.2
-
47
-
-
84893483727
-
Gene-centric approach to integrating environmental genomics and biogeochemical models
-
Reed, D. C., Algar, C. K., Huber, J. A., and Dick, G. J. (2014). Gene-centric approach to integrating environmental genomics and biogeochemical models. Proc. Natl. Acad. Sci. U.S.A. 111, 1879-1884. doi: 10.1073/pnas.1313713111
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 1879-1884
-
-
Reed, D.C.1
Algar, C.K.2
Huber, J.A.3
Dick, G.J.4
-
48
-
-
84875368746
-
Microbial composition affects the functioning of estuarine sediments
-
Reed, H. E., and Martiny, J. B. (2012). Microbial composition affects the functioning of estuarine sediments. ISME J. 7, 868-879. doi: 10.1038/ismej.2012.154
-
(2012)
ISME J.
, vol.7
, pp. 868-879
-
-
Reed, H.E.1
Martiny, J.B.2
-
49
-
-
38649094238
-
Anaerobic ammonium oxidation (Anammox) in Chesapeake Bay sediments
-
Rich, J. J., Dale, O. R., Song, B., and Ward, B. B. (2008). Anaerobic ammonium oxidation (Anammox) in Chesapeake Bay sediments. Microb. Ecol. 55, 311-320. doi: 10.1007/s00248-007-9277-3
-
(2008)
Microb. Ecol.
, vol.55
, pp. 311-320
-
-
Rich, J.J.1
Dale, O.R.2
Song, B.3
Ward, B.B.4
-
50
-
-
0037256121
-
Coupled nitrification-denitrification in autotrophic and heterotrophic estuarine sediments: on the influence of benthic microalgae
-
Risgaard-Petersen, N. (2003). Coupled nitrification-denitrification in autotrophic and heterotrophic estuarine sediments: on the influence of benthic microalgae. Limnol. Oceanogr. 48, 93-105. doi: 10.4319/lo.2003.48.1.0093
-
(2003)
Limnol. Oceanogr.
, vol.48
, pp. 93-105
-
-
Risgaard-Petersen, N.1
-
51
-
-
0030814870
-
The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations
-
Rotthauwe, J. H., Witzel, K.-P., and Liesack, W. (1997). The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol. 63, 4704-4712.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4704-4712
-
-
Rotthauwe, J.H.1
Witzel, K.-P.2
Liesack, W.3
-
52
-
-
0037315564
-
Global RNA half-life analysis in Escherichia coli reveals positional patters of transcript degradation
-
Selinger, D. W., Saxena, R. M., Cheung, K. J., Church, G. M., and Rosenow, C. (2003). Global RNA half-life analysis in Escherichia coli reveals positional patters of transcript degradation. Genome Res. 13, 216-223. doi: 10.1101/gr.912603
-
(2003)
Genome Res.
, vol.13
, pp. 216-223
-
-
Selinger, D.W.1
Saxena, R.M.2
Cheung, K.J.3
Church, G.M.4
Rosenow, C.5
-
53
-
-
34249864562
-
Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments
-
Smith, C. J., Nedwell, D. B., Dong, L. F., and Osborne, A. M. (2007). Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Appl. Environ. Microbiol. 73, 3612-3622. doi: 10.1128/AEM.02894-06
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 3612-3622
-
-
Smith, C.J.1
Nedwell, D.B.2
Dong, L.F.3
Osborne, A.M.4
-
54
-
-
0037251319
-
Eutrophication of freshwater and coastal marine ecosystems a global problem
-
Smith, V. H. (2003). Eutrophication of freshwater and coastal marine ecosystems a global problem. Environ. Sci. Pollut. Res. 10, 126-139. doi: 10.1065/espr2002.12.142
-
(2003)
Environ. Sci. Pollut. Res.
, vol.10
, pp. 126-139
-
-
Smith, V.H.1
-
55
-
-
77952311196
-
Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus
-
Steglich, C., Lindell, D., Futschik, M., Rector, T., Steen, R., and Chisholm, S. W. (2010). Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus. Genome Biol. 11, R54. doi: 10.1186/gb-2010-11-5-r54
-
(2010)
Genome Biol.
, vol.11
, pp. R54
-
-
Steglich, C.1
Lindell, D.2
Futschik, M.3
Rector, T.4
Steen, R.5
Chisholm, S.W.6
-
57
-
-
84860115124
-
Integrating microbial ecology into ecosystem models: challenges and priorities
-
Treseder, K. K., Balser, T. C., Bradford, M. A., Brodie, E. L., Dubinsky, E. A., Eviner, V. T., et al. (2011). Integrating microbial ecology into ecosystem models: challenges and priorities. Biogeochemistry 109, 7-18. doi: 10.1007/s10533-011-9636-5
-
(2011)
Biogeochemistry
, vol.109
, pp. 7-18
-
-
Treseder, K.K.1
Balser, T.C.2
Bradford, M.A.3
Brodie, E.L.4
Dubinsky, E.A.5
Eviner, V.T.6
-
58
-
-
0027041857
-
Couplings of watersheds nad coastal waters -sources and consequecnes of nutrient enrichment in Waquoit Bay, Massachusetts
-
Valiela, I., Foreman, K., LaMontagne, M., Hersh, D., Costa, J., Peckol, P., et al. (1992). Couplings of watersheds nad coastal waters -sources and consequecnes of nutrient enrichment in Waquoit Bay, Massachusetts. Estuaries 15, 443-457. doi: 10.2307/1352389
-
(1992)
Estuaries
, vol.15
, pp. 443-457
-
-
Valiela, I.1
Foreman, K.2
LaMontagne, M.3
Hersh, D.4
Costa, J.5
Peckol, P.6
-
59
-
-
79958013698
-
Predicting microbial nitrogen pathways from basic principles
-
van de Leemput, I. A., Veraart, A. J., Dakos, V., de Klein, J. J. M., Strous, M., and Scheffer, M. (2011). Predicting microbial nitrogen pathways from basic principles. Environ. Microbiol. 13, 1477-1487. doi: 10.1111/j.1462-2920.2011.02450.x
-
(2011)
Environ. Microbiol.
, vol.13
, pp. 1477-1487
-
-
van de Leemput, I.A.1
Veraart, A.J.2
Dakos, V.3
de Klein, J.J.M.4
Strous, M.5
Scheffer, M.6
-
60
-
-
0031456471
-
Cell biology and molecular basis of denitrification
-
Zumft, W. (1997). Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Res. 61, 533-615.
-
(1997)
Microbiol. Mol. Biol. Res.
, vol.61
, pp. 533-615
-
-
Zumft, W.1
|