Draft genome sequence of Escherichia coli strain Nissle 1917 (serovar O6:K5:H1)

Genome Announcements

Volumn 1, Issue 2, 2013, Pages

  Cress, Brady F ^a   Linhardt, Robert J ^a,b,c   Koffas, Mattheos A G ^a  

^a RENSSELAER POLYTECHNIC INSTITUTE   (United States)

^b Rensselaer Polytechnic Institute   (United States)

^c RENSSELAER POLYTECHNIC INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84986214869     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00047-13     Document Type: Article

References (9)

1. Sonnenborn U, Schulze J. 2009. The non-pathogenic Escherichia coli strain Nissle 1917-features of a versatile probiotic. Microb. Ecol. Health Dis. 21:122-158.
2. Nissle A. 1918. Die antagonistische Behandlung chronischer Darmstörungen mit Colibakterien. Med. Klin. 2:29-33.
3. Grozdanov L, Raasch C, Schulze J, Sonnenborn U, Gottschalk G, Hacker J, Dobrindt U. 2004. Analysis of the genome structure of the nonpathogenic probiotic Escherichia coli strain Nissle 1917. J. Bacteriol. 186: 5432-5441.
4. Sun J, Gunzer F, Westendorf AM, Buer J, Scharfe M, Jarek M, Gössling F, Blöcker H, Zeng A-P. 2005. Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data. J. Biotechnol. 117:147-161.
5. Ly M, Wang Z, Laremore TN, Zhang F, Zhong W, Pu D, Zagorevski DV, Dordick JS, Linhardt RJ. 2011. Analysis of E. coli K5 capsular polysaccharide heparosan. Anal. Bioanal. Chem. 399:737-745.
6. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
7. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75.
8. Delcher AL, Bratke Ka, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with glimmer. Bioinformatics 23: 673-679.
9. DeJongh M, Formsma K, Boillot P, Gould J, Rycenga M, Best A. 2007. Toward the automated generation of genome-scale metabolic networks in the SEED. BMC Bioinformatics 8:139.