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Volumn 2016-August, Issue , 2016, Pages 1799-1803

Partial DNA assembly: A rate-distortion perspective

Author keywords

[No Author keywords available]

Indexed keywords

GENES; INFORMATION THEORY; SIGNAL DISTORTION;

EID: 84985996030     PISSN: 21578095     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ISIT.2016.7541609     Document Type: Conference Paper
Times cited : (19)

References (12)
  • 1
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    • G. Bresler, M. Bresler, and D. Tse, "Optimal Assembly for High Throughput Shotgun Sequencing, " BMC Bioinformatics, 2013.
    • (2013) BMC Bioinformatics
    • Bresler, G.1    Bresler, M.2    Tse, D.3
  • 2
    • 0027113212 scopus 로고
    • Approximate String Matching with q-grams and maximal matches
    • E. Ukkonen, "Approximate String Matching with q-grams and maximal matches, " Theoretical Computer Science, vol. 92, no. 1, 1992.
    • (1992) Theoretical Computer Science , vol.92 , Issue.1
    • Ukkonen, E.1
  • 4
    • 84958554065 scopus 로고    scopus 로고
    • Efficient local alignment discovery amongst noisy long reads
    • Springer
    • E. W. Myers, "Efficient local alignment discovery amongst noisy long reads, " in Algorithms in Bioinformatics. Springer, 2014, pp. 52-67.
    • (2014) Algorithms in Bioinformatics , pp. 52-67
    • Myers, E.W.1
  • 5
    • 27544497879 scopus 로고    scopus 로고
    • The fragment assembly string graph
    • -, "The fragment assembly string graph, " Bioinformatics, vol. 21, pp. 79-85, 2005.
    • (2005) Bioinformatics , vol.21 , pp. 79-85
    • Myers, E.W.1
  • 8
    • 70349212271 scopus 로고    scopus 로고
    • Parametric complexity of sequence assembly: Theory and applications to next generation sequencing
    • N. Nagarajan and M. Pop, "Parametric complexity of sequence assembly: theory and applications to next generation sequencing, " Journal of computational biology, vol. 16, no. 7, pp. 897-908, 2009.
    • (2009) Journal of Computational Biology , vol.16 , Issue.7 , pp. 897-908
    • Nagarajan, N.1    Pop, M.2
  • 10
    • 0024135088 scopus 로고
    • A greedy approximation algorithm for constructing shortest common superstrings
    • J. Tarhio and E. Ukkonen, "A greedy approximation algorithm for constructing shortest common superstrings, " Theoret. Comput. Science, vol. 57, pp. 131-145, 1988.
    • (1988) Theoret. Comput. Science , vol.57 , pp. 131-145
    • Tarhio, J.1    Ukkonen, E.2
  • 11
    • 84985931567 scopus 로고    scopus 로고
    • [Online]. Available: http://gage. cbcb. umd. edu/


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.