-
1
-
-
34548190012
-
A central integrator of transcription networks in plant stress and energy signalling
-
Baena-González, E., Rolland, F., Thevelein, J.M., and Sheen, J. (2007). A central integrator of transcription networks in plant stress and energy signalling. Nature 448: 938–942.
-
(2007)
Nature
, vol.448
, pp. 938-942
-
-
Baena-González, E.1
Rolland, F.2
Thevelein, J.M.3
Sheen, J.4
-
2
-
-
0027219015
-
Root development in Arabidopsis: Four mutants with dramatically altered root morphogenesis
-
Benfey, P.N., Linstead, P.J., Roberts, K., Schiefelbein, J.W., Hauser, M.T., and Aeschbacher, R.A. (1993). Root development in Arabidopsis: four mutants with dramatically altered root morphogenesis. Development 119: 57–70.
-
(1993)
Development
, vol.119
, pp. 57-70
-
-
Benfey, P.N.1
Linstead, P.J.2
Roberts, K.3
Schiefelbein, J.W.4
Hauser, M.T.5
Aeschbacher, R.A.6
-
3
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. J.R.Stat.Soc.Ser.BStat.Methodol.57: 289–300.
-
(1995)
J.R.Stat.Soc.Ser.Bstat.Methodol
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
4
-
-
33847753534
-
Specific aquaporins facilitate the diffusion of hydrogen peroxide across membranes
-
Bienert, G.P., Møller, A.L.B., Kristiansen, K.A., Schulz, A., Møller, I.M., Schjoerring, J.K., and Jahn, T.P. (2007). Specific aquaporins facilitate the diffusion of hydrogen peroxide across membranes. J. Biol. Chem. 282: 1183–1192.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 1183-1192
-
-
Bienert, G.P.1
Møller, A.L.B.2
Kristiansen, K.A.3
Schulz, A.4
Møller, I.M.5
Schjoerring, J.K.6
Jahn, T.P.7
-
5
-
-
77955704591
-
Peroxisomal hydrogen peroxide is coupled to biotic defense responses by ISOCHORISMATE SYNTHASE1 in a daylength-related manner
-
Chaouch, S., Queval, G., Vanderauwera, S., Mhamdi, A., Vandorpe, M., Langlois-Meurinne, M., Van Breusegem, F., Saindrenan, P., and Noctor, G. (2010). Peroxisomal hydrogen peroxide is coupled to biotic defense responses by ISOCHORISMATE SYNTHASE1 in a daylength-related manner. Plant Physiol. 153: 1692–1705.
-
(2010)
Plant Physiol
, vol.153
, pp. 1692-1705
-
-
Chaouch, S.1
Queval, G.2
Vanderauwera, S.3
Mhamdi, A.4
Vandorpe, M.5
Langlois-Meurinne, M.6
Van Breusegem, F.7
Saindrenan, P.8
Noctor, G.9
-
6
-
-
77958049190
-
Myo-inositol abolishes salicylic acid-dependent cell death and pathogen defence responses triggered by peroxisomal hydrogen peroxide
-
Chaouch, S., and Noctor, G. (2010). Myo-inositol abolishes salicylic acid-dependent cell death and pathogen defence responses triggered by peroxisomal hydrogen peroxide. New Phytol. 188: 711–718.
-
(2010)
New Phytol
, vol.188
, pp. 711-718
-
-
Chaouch, S.1
Noctor, G.2
-
7
-
-
0021139249
-
Effects of molecular oxygen on detection of superoxide radical with nitroblue tetrazolium and on activity stains for catalase
-
Clare, D.A., Duong, M.N., Darr, D., Archibald, F., and Fridovich, I. (1984). Effects of molecular oxygen on detection of superoxide radical with nitroblue tetrazolium and on activity stains for catalase. Anal. Biochem. 140: 532–537.
-
(1984)
Anal. Biochem
, vol.140
, pp. 532-537
-
-
Clare, D.A.1
Duong, M.N.2
Darr, D.3
Archibald, F.4
Fridovich, I.5
-
8
-
-
84965090835
-
Redox regulation of plant development. Antioxid
-
Considine, M.J., and Foyer, C.H. (2014). Redox regulation of plant development. Antioxid. Redox Signal. 21: 1305–1326.
-
(2014)
Redox Signal
, vol.21
, pp. 1305-1326
-
-
Considine, M.J.1
Foyer, C.H.2
-
9
-
-
84859308651
-
SCARECROW has a SHORT-ROOT-independent role in modulating the sugar response
-
Cui, H., Hao, Y., and Kong, D. (2012). SCARECROW has a SHORT-ROOT-independent role in modulating the sugar response. Plant Physiol. 158: 1769–1778.
-
(2012)
Plant Physiol
, vol.158
, pp. 1769-1778
-
-
Cui, H.1
Hao, Y.2
Kong, D.3
-
10
-
-
80455173575
-
Genome-wide direct target analysis reveals a role for SHORT-ROOT in root vascular patterning through cytokinin homeostasis
-
Cui, H., Hao, Y., Kovtun, M., Stolc, V., Deng, X.-W., Sakakibara, H., and Kojima, M. (2011). Genome-wide direct target analysis reveals a role for SHORT-ROOT in root vascular patterning through cytokinin homeostasis. Plant Physiol. 157: 1221–1231.
-
(2011)
Plant Physiol
, vol.157
, pp. 1221-1231
-
-
Cui, H.1
Hao, Y.2
Kovtun, M.3
Stolc, V.4
Deng, X.-W.5
Sakakibara, H.6
Kojima, M.7
-
11
-
-
84898492306
-
SCARECROW, SCR-LIKE 23 and SHORT-ROOT control bundle sheath cell fate and function in Arabidopsis thaliana
-
Cui, H., Kong, D., Liu, X., and Hao, Y. (2014). SCARECROW, SCR-LIKE 23 and SHORT-ROOT control bundle sheath cell fate and function in Arabidopsis thaliana. Plant J. 78: 319–327.
-
(2014)
Plant J
, vol.78
, pp. 319-327
-
-
Cui, H.1
Kong, D.2
Liu, X.3
Hao, Y.4
-
12
-
-
34247515226
-
An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants
-
Cui, H., Levesque, M.P.,Vernoux, T., Jung, J.W., Paquette, A.J., Gallagher, K.L., Wang, J.Y., Blilou, I., Scheres, B., and Benfey, P.N. (2007). An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants. Science 316: 421–425.
-
(2007)
Science
, vol.316
, pp. 421-425
-
-
Cui, H.1
Levesque, M.P.2
Vernoux, T.3
Jung, J.W.4
Paquette, A.J.5
Gallagher, K.L.6
Wang, J.Y.7
Blilou, I.8
Scheres, B.9
Benfey, P.N.10
-
13
-
-
78249280277
-
SHORT-ROOT and SCARECROW regulate leaf growth in Arabidopsis by stimulating S-phase progression of the cell cycle
-
Dhondt, S., Coppens, F., De Winter, F., Swarup, K., Merks, R.M.H., Inzé, D., Bennett, M.J., and Beemster, G.T.S. (2010). SHORT-ROOT and SCARECROW regulate leaf growth in Arabidopsis by stimulating S-phase progression of the cell cycle. Plant Physiol. 154: 1183–1195.
-
(2010)
Plant Physiol
, vol.154
, pp. 1183-1195
-
-
Dhondt, S.1
Coppens, F.2
De Winter, F.3
Swarup, K.4
Merks, R.M.H.5
Inzé, D.6
Bennett, M.J.7
Beemster, G.T.S.8
-
14
-
-
0030576502
-
The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root
-
Di Laurenzio, L., Wysocka-Diller, J., Malamy, J.E., Pysh, L., Helariutta, Y., Freshour, G., Hahn, M.G., Feldmann, K.A., and Benfey, P.N. (1996). The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root. Cell 86: 423–433.
-
(1996)
Cell
, vol.86
, pp. 423-433
-
-
Di Laurenzio, L.1
Wysocka-Diller, J.2
Malamy, J.E.3
Pysh, L.4
Helariutta, Y.5
Freshour, G.6
Hahn, M.G.7
Feldmann, K.A.8
Benfey, P.N.9
-
15
-
-
77953227279
-
The Arabidopsis thaliana myo-inositol 1-phosphate synthase1 gene is required for myoinositol synthesis and suppression of cell death
-
Donahue, J.L., Alford, S.R., Torabinejad, J., Kerwin, R.E., Nourbakhsh, A., Ray, W.K., Hernick, M., Huang, X., Lyons, B.M., Hein, P.P., and Gillaspy, G.E. (2010). The Arabidopsis thaliana myo-inositol 1-phosphate synthase1 gene is required for myoinositol synthesis and suppression of cell death. Plant Cell 22: 888–903.
-
(2010)
Plant Cell
, vol.22
, pp. 888-903
-
-
Donahue, J.L.1
Alford, S.R.2
Torabinejad, J.3
Kerwin, R.E.4
Nourbakhsh, A.5
Ray, W.K.6
Hernick, M.7
Huang, X.8
Lyons, B.M.9
Hein, P.P.10
Gillaspy, G.E.11
-
16
-
-
60249087049
-
Myoinositol oxygenase controls the level of myoinositol in Arabidopsis, but does not increase ascorbic acid
-
Endres, S., and Tenhaken, R. (2009). Myoinositol oxygenase controls the level of myoinositol in Arabidopsis, but does not increase ascorbic acid. Plant Physiol. 149: 1042–1049.
-
(2009)
Plant Physiol
, vol.149
, pp. 1042-1049
-
-
Endres, S.1
Tenhaken, R.2
-
17
-
-
60749136076
-
Redox regulation in photosynthetic organisms: Signaling, acclimation, and practical implications
-
Foyer, C.H., and Noctor, G. (2009). Redox regulation in photosynthetic organisms: signaling, acclimation, and practical implications. Antioxid. Redox Signal. 11: 861–905.
-
(2009)
Antioxid. Redox Signal
, vol.11
, pp. 861-905
-
-
Foyer, C.H.1
Noctor, G.2
-
18
-
-
0030111311
-
SGR1, SGR2, and SGR3: Novel genetic loci involved in shoot gravitropism in Arabidopsis thaliana
-
Fukaki, H., Fujisawa, H., and Tasaka, M. (1996). SGR1, SGR2, and SGR3: novel genetic loci involved in shoot gravitropism in Arabidopsis thaliana. Plant Physiol. 110: 945–955.
-
(1996)
Plant Physiol
, vol.110
, pp. 945-955
-
-
Fukaki, H.1
Fujisawa, H.2
Tasaka, M.3
-
19
-
-
0032077966
-
Genetic evidence that the endodermis is essential for shoot gravitropism in Arabidopsis thaliana
-
Fukaki, H., Wysocka-Diller, J., Kato, T., Fujisawa, H., Benfey, P.N., and Tasaka, M. (1998). Genetic evidence that the endodermis is essential for shoot gravitropism in Arabidopsis thaliana. Plant J. 14: 425–430.
-
(1998)
Plant J
, vol.14
, pp. 425-430
-
-
Fukaki, H.1
Wysocka-Diller, J.2
Kato, T.3
Fujisawa, H.4
Benfey, P.N.5
Tasaka, M.6
-
20
-
-
33745667787
-
Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis
-
Gadjev, I., Vanderauwera, S., Gechev, T.S., Laloi, C., Minkov, I.N., Shulaev, V., Apel, K., Inzé, D., Mittler, R., and Van Breusegem, F. (2006). Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis. Plant Physiol. 141: 436–445.
-
(2006)
Plant Physiol
, vol.141
, pp. 436-445
-
-
Gadjev, I.1
Vanderauwera, S.2
Gechev, T.S.3
Laloi, C.4
Minkov, I.N.5
Shulaev, V.6
Apel, K.7
Inzé, D.8
Mittler, R.9
Van Breusegem, F.10
-
21
-
-
78650361870
-
Simultaneous activation of SHR and ATHB8 expression defines switch to preprocambial cell state in Arabidopsis leaf development
-
Gardiner, J., Donner, T.J., and Scarpella, E. (2011). Simultaneous activation of SHR and ATHB8 expression defines switch to preprocambial cell state in Arabidopsis leaf development. Dev. Dyn. 240: 261–270.
-
(2011)
Dev. Dyn
, vol.240
, pp. 261-270
-
-
Gardiner, J.1
Donner, T.J.2
Scarpella, E.3
-
22
-
-
0032004229
-
2,4-Dichlorophenoxybutyric acid-resistant mutants of Arabidopsis have defects in glyoxysomal fatty acid b-oxidation
-
Hayashi, M., Toriyama, K., Kondo, M., and Nishimura, M. (1998). 2,4-Dichlorophenoxybutyric acid-resistant mutants of Arabidopsis have defects in glyoxysomal fatty acid b-oxidation. Plant Cell 10: 183–195.
-
(1998)
Plant Cell
, vol.10
, pp. 183-195
-
-
Hayashi, M.1
Toriyama, K.2
Kondo, M.3
Nishimura, M.4
-
23
-
-
0034716906
-
The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling
-
Helariutta, Y., Fukaki, H., Wysocka-Diller, J., Nakajima, K., Jung, J., Sena, G., Hauser, M.-T., and Benfey, P.N. (2000). The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling. Cell 101: 555–567.
-
(2000)
Cell
, vol.101
, pp. 555-567
-
-
Helariutta, Y.1
Fukaki, H.2
Wysocka-Diller, J.3
Nakajima, K.4
Jung, J.5
Sena, G.6
Hauser, M.-T.7
Benfey, P.N.8
-
24
-
-
84929657646
-
Protein methionine sulfoxide dynamics in Arabidopsis thaliana under oxidative stress
-
Jacques, S., Ghesquière, B., De Bock, P.-J., Demol, H., Wahni, K., Willems, P., Messens, J., Van Breusegem, F., and Gevaert, K. (2015). Protein methionine sulfoxide dynamics in Arabidopsis thaliana under oxidative stress. Mol. Cell. Proteomics 14: 1217–1229.
-
(2015)
Mol. Cell. Proteomics
, vol.14
, pp. 1217-1229
-
-
Jacques, S.1
Ghesquière, B.2
De Bock, P.-J.3
Demol, H.4
Wahni, K.5
Willems, P.6
Messens, J.7
Van Breusegem, F.8
Gevaert, K.9
-
26
-
-
84921605673
-
2-dependent cell death
-
2-dependent cell death. Plant Cell Environ. 38: 253–265.
-
(2015)
Plant Cell Environ
, vol.38
, pp. 253-265
-
-
Kerchev, P.1
Mühlenbock, P.2
Denecker, J.3
Morreel, K.4
Hoeberichts, F.A.5
Van Der Kelen, K.6
Vandorpe, M.7
Nguyen, L.8
Audenaert, D.9
Van Breusegem, F.10
-
27
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D., Pertea, G., Trapnell, C., Pimentel, H., Kelley, R., and Salzberg, S.L. (2013). TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14: R36.
-
(2013)
Genome Biol
, vol.14
, pp. R36
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
Salzberg, S.L.6
-
28
-
-
0033832077
-
The Arabidopsis sugar-insensitive mutants sis4 and sis5 are defective in abscisic acid synthesis and response
-
Laby, R.J., Kincaid, M.S., Kim, D., and Gibson, S.I. (2000). The Arabidopsis sugar-insensitive mutants sis4 and sis5 are defective in abscisic acid synthesis and response. Plant J. 23: 587–596.
-
(2000)
Plant J
, vol.23
, pp. 587-596
-
-
Laby, R.J.1
Kincaid, M.S.2
Kim, D.3
Gibson, S.I.4
-
30
-
-
33646723046
-
Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis
-
Levesque, M.P., Vernoux, T., Busch, W., Cui, H., Wang, J.Y., Blilou, I., Hassan, H., Nakajima, K., Matsumoto, N., Lohmann, J.U., Scheres, B., and Benfey, P.N. (2006). Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis. PLoS Biol. 4: e143.
-
(2006)
Plos Biol
, vol.4
-
-
Levesque, M.P.1
Vernoux, T.2
Busch, W.3
Cui, H.4
Wang, J.Y.5
Blilou, I.6
Hassan, H.7
Nakajima, K.8
Matsumoto, N.9
Lohmann, J.U.10
Scheres, B.11
Benfey, P.N.12
-
31
-
-
84897397058
-
W. (2014). featureCounts: An efficient general purpose program for assigning sequence reads to genomic features
-
Liao, Y., Smyth, G.K., and Shi, W. (2014). featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics 30: 923–930.
-
Bioinformatics
, vol.30
, pp. 923-930
-
-
Liao, Y.1
Smyth, G.K.2
-
32
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H., and Durbin, R. (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754–1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
33
-
-
84894500784
-
The protein phosphatase subunit PP2A-B’g is required to suppress day length-dependent pathogenesis responses triggered by intracellular oxidative stress
-
Li, S., Mhamdi, A., Trotta, A., Kangasjärvi, S., and Noctor, G. (2014). The protein phosphatase subunit PP2A-B’g is required to suppress day length-dependent pathogenesis responses triggered by intracellular oxidative stress. New Phytol. 202: 145–160.
-
(2014)
New Phytol
, vol.202
, pp. 145-160
-
-
Li, S.1
Mhamdi, A.2
Trotta, A.3
Kangasjärvi, S.4
Noctor, G.5
-
34
-
-
1642506227
-
Myo-inositol oxygenase offers a possible entry point into plant ascorbate biosynthesis
-
Lorence, A., Chevone, B.I., Mendes, P., and Nessler, C.L. (2004). Myo-inositol oxygenase offers a possible entry point into plant ascorbate biosynthesis. Plant Physiol. 134: 1200–1205.
-
(2004)
Plant Physiol
, vol.134
, pp. 1200-1205
-
-
Lorence, A.1
Chevone, B.I.2
Mendes, P.3
Nessler, C.L.4
-
35
-
-
14644420819
-
LESION SIMULATING DISEASE 1 is required for acclimation to conditions that promote excess excitation energy
-
Mateo, A., Mühlenbock, P., Rustérucci, C., Chang, C.C.-C., Miszalski, Z., Karpińska, B., Parker, J.E., Mullineaux, P.M., and Karpiński, S. (2004). LESION SIMULATING DISEASE 1 is required for acclimation to conditions that promote excess excitation energy. Plant Physiol. 136: 2818–2830.
-
(2004)
Plant Physiol
, vol.136
, pp. 2818-2830
-
-
Mateo, A.1
Mühlenbock, P.2
Rustérucci, C.3
Chang, C.C.4
Miszalski, Z.5
Karpińska, B.6
Parker, J.E.7
Mullineaux, P.M.8
Karpiński, S.9
-
36
-
-
84858041341
-
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
-
McCarthy, D.J., Chen, Y., and Smyth, G.K. (2012). Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation. Nucleic Acids Res. 40: 4288–4297.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 4288-4297
-
-
McCarthy, D.J.1
Chen, Y.2
Smyth, G.K.3
-
37
-
-
77958076980
-
Catalase function in plants: A focus on Arabidopsis mutants as stress-mimic models
-
Mhamdi, A., Queval, G., Chaouch, S., Vanderauwera, S., Van Breusegem, F., and Noctor, G. (2010). Catalase function in plants: a focus on Arabidopsis mutants as stress-mimic models. J. Exp. Bot. 61: 4197–4220.
-
(2010)
J. Exp. Bot
, vol.61
, pp. 4197-4220
-
-
Mhamdi, A.1
Queval, G.2
Chaouch, S.3
Vanderauwera, S.4
Van Breusegem, F.5
Noctor, G.6
-
38
-
-
84864630234
-
Plant catalases: Peroxisomal redox guardians
-
Mhamdi, A., Noctor, G., and Baker, A. (2012). Plant catalases: peroxisomal redox guardians. Arch. Biochem. Biophys. 525: 181–194.
-
(2012)
Arch. Biochem. Biophys
, vol.525
, pp. 181-194
-
-
Mhamdi, A.1
Noctor, G.2
Baker, A.3
-
39
-
-
79958042568
-
ROS signaling: The new wave?
-
Mittler, R., Vanderauwera, S., Suzuki, N., Miller, G., Tognetti, V.B., Vandepoele, K., Gollery, M., Shulaev, V., and Van Breusegem, F. (2011). ROS signaling: the new wave? Trends Plant Sci. 16: 300–309.
-
(2011)
Trends Plant Sci
, vol.16
, pp. 300-309
-
-
Mittler, R.1
Vanderauwera, S.2
Suzuki, N.3
Miller, G.4
Tognetti, V.B.5
Vandepoele, K.6
Gollery, M.7
Shulaev, V.8
Van Breusegem, F.9
-
40
-
-
77449140750
-
Ascorbic acid deficiency in Arabidopsis induces constitutive priming that is dependent on hydrogen peroxide, salicylic acid, and the NPR1 gene
-
Mukherjee, M., Larrimore, K.E., Ahmed, N.J., Bedick, T.S., Barghouthi, N.T., Traw, M.B., and Barth, C. (2010). Ascorbic acid deficiency in Arabidopsis induces constitutive priming that is dependent on hydrogen peroxide, salicylic acid, and the NPR1 gene. Mol. Plant-Microbe Interact. 23: 340–351.
-
(2010)
Mol. Plant-Microbe Interact
, vol.23
, pp. 340-351
-
-
Mukherjee, M.1
Larrimore, K.E.2
Ahmed, N.J.3
Bedick, T.S.4
Barghouthi, N.T.5
Traw, M.B.6
Barth, C.7
-
41
-
-
0035921927
-
Intercellular movement of the putative transcription factor SHR in root patterning
-
Nakajima, K., Sena, G., Nawy, T., and Benfey, P.N. (2001). Intercellular movement of the putative transcription factor SHR in root patterning. Nature 413: 307–311.
-
(2001)
Nature
, vol.413
, pp. 307-311
-
-
Nakajima, K.1
Sena, G.2
Nawy, T.3
Benfey, P.N.4
-
42
-
-
0036890406
-
Web-based primer design for single nucleotide polymorphism analysis
-
Neff, M.M., Turk, E., and Kalishman, M. (2002). Web-based primer design for single nucleotide polymorphism analysis. Trends Genet. 18: 613–615.
-
(2002)
Trends Genet
, vol.18
, pp. 613-615
-
-
Neff, M.M.1
Turk, E.2
Kalishman, M.3
-
43
-
-
34548453255
-
Functional classification of Arabidopsis peroxisome biogenesis factors proposed from analyses of knockdown mutants
-
Nito, K., Kamigaki, A., Kondo, M., Hayashi, M., and Nishimura, M. (2007). Functional classification of Arabidopsis peroxisome biogenesis factors proposed from analyses of knockdown mutants. Plant Cell Physiol. 48: 763–774.
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 763-774
-
-
Nito, K.1
Kamigaki, A.2
Kondo, M.3
Hayashi, M.4
Nishimura, M.5
-
44
-
-
84936889284
-
The metabolomics of oxidative stress
-
Noctor, G., Lelarge-Trouverie, C., and Mhamdi, A. (2015). The metabolomics of oxidative stress. Phytochemistry 112: 33–53.
-
(2015)
Phytochemistry
, vol.112
, pp. 33-53
-
-
Noctor, G.1
Lelarge-Trouverie, C.2
Mhamdi, A.3
-
46
-
-
35848934561
-
2 -induced cell death
-
2 -induced cell death. Plant J. 52: 640–657.
-
(2007)
Plant J
, vol.52
, pp. 640-657
-
-
Queval, G.1
Issakidis-Bourguet, E.2
Hoeberichts, F.A.3
Vandorpe, M.4
Gakière, B.5
Vanacker, H.6
Miginiac-Maslow, M.7
Van Breusegem, F.8
Noctor, G.9
-
47
-
-
33847390672
-
A plate reader method for the measurement of NAD, NADP, glutathione, and ascorbate in tissue extracts: Application to redox profiling during Arabidopsis rosette development
-
Queval, G., and Noctor, G. (2007). A plate reader method for the measurement of NAD, NADP, glutathione, and ascorbate in tissue extracts: Application to redox profiling during Arabidopsis rosette development. Anal. Biochem. 363: 58–69.
-
(2007)
Anal. Biochem
, vol.363
, pp. 58-69
-
-
Queval, G.1
Noctor, G.2
-
48
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M.D., McCarthy, D.J., and Smyth, G.K. (2010). edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139–140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
49
-
-
77953176036
-
A scaling normalization method for differential expression analysis of RNA-seq data
-
Robinson, M.D., and Oshlack, A. (2010). A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol. 11: R25.
-
(2010)
Genome Biol
, vol.11
, pp. R25
-
-
Robinson, M.D.1
Oshlack, A.2
-
50
-
-
84863230574
-
Glycolate oxidase modulates reactive oxygen species-mediated signal transduction during nonhost resistance in Nicotiana benthamiana and Arabidopsis
-
Rojas, C.M., Senthil-Kumar, M., Wang, K., Ryu, C.-M., Kaundal, A., and Mysore, K.S. (2012). Glycolate oxidase modulates reactive oxygen species-mediated signal transduction during nonhost resistance in Nicotiana benthamiana and Arabidopsis. Plant Cell 24: 336–352.
-
(2012)
Plant Cell
, vol.24
, pp. 336-352
-
-
Rojas, C.M.1
Senthil-Kumar, M.2
Wang, K.3
Ryu, C.-M.4
Kaundal, A.5
Mysore, K.S.6
-
51
-
-
84938913588
-
Peroxisomes sense and respond to environmental cues by regulating ROS and RNS signalling networks
-
Sandalio, L.M., and Romero-Puertas, M.C. (2015). Peroxisomes sense and respond to environmental cues by regulating ROS and RNS signalling networks. Ann. Bot. (Lond.) 116: 475–485.
-
(2015)
Ann. Bot. (Lond.)
, vol.116
, pp. 475-485
-
-
Sandalio, L.M.1
Romero-Puertas, M.C.2
-
52
-
-
0028796916
-
Mutations affecting the radial organisation of the Arabidopsis root display specific defects throughout the embryonic axis
-
Scheres, B., Di Laurenzio, L., Willemsen, V., Hauser, M.-T., Janmaat, K., Weisbeek, P., and Benfey, P.N. (1995). Mutations affecting the radial organisation of the Arabidopsis root display specific defects throughout the embryonic axis. Development 121: 53–62.
-
(1995)
Development
, vol.121
, pp. 53-62
-
-
Scheres, B.1
Di Laurenzio, L.2
Willemsen, V.3
Hauser, M.-T.4
Janmaat, K.5
Weisbeek, P.6
Benfey, P.N.7
-
53
-
-
68349086946
-
SHOREmap: Simultaneous mapping and mutation identification by deep sequencing
-
Schneeberger, K., Ossowski, S., Lanz, C., Juul, T., Petersen, A.H., Nielsen, K.L., Jørgensen, J.E., Weigel, D., and Andersen, S.U. (2009). SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nat. Methods 6: 550–551.
-
(2009)
Nat. Methods
, vol.6
, pp. 550-551
-
-
Schneeberger, K.1
Ossowski, S.2
Lanz, C.3
Juul, T.4
Petersen, A.H.5
Nielsen, K.L.6
Jørgensen, J.E.7
Weigel, D.8
Andersen, S.U.9
-
54
-
-
42949151399
-
The ferredoxin/thior-edoxin system of oxygenic photosynthesis. Antioxid
-
Schürmann, P., and Buchanan, B.B. (2008). The ferredoxin/thior-edoxin system of oxygenic photosynthesis. Antioxid. Redox Signal. 10: 1235–1274.
-
(2008)
Redox Signal
, vol.10
, pp. 1235-1274
-
-
Schürmann, P.1
Buchanan, B.B.2
-
55
-
-
84870799409
-
Scarecrow plays a role in establishing Kranz anatomy in maize leaves
-
Slewinski, T.L., Anderson, A.A., Zhang, C., and Turgeon, R. (2012). Scarecrow plays a role in establishing Kranz anatomy in maize leaves. Plant Cell Physiol. 53: 2030–2037.
-
(2012)
Plant Cell Physiol
, vol.53
, pp. 2030-2037
-
-
Slewinski, T.L.1
Erson, A.A.2
Zhang, C.3
Turgeon, R.4
-
56
-
-
32444446805
-
XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
-
Smith, C.A., Want, E.J., O’Maille, G., Abagyan, R., and Siuzdak, G. (2006). XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal. Chem. 78: 779–787.
-
(2006)
Anal. Chem
, vol.78
, pp. 779-787
-
-
Smith, C.A.1
Want, E.J.2
O’Maille, G.3
Abagyan, R.4
Siuzdak, G.5
-
57
-
-
0001718285
-
A phosphoglycolate phosphatase-deficient mutant of Arabidopsis
-
Somerville, C.R., and Ogren, W.L. (1979). A phosphoglycolate phosphatase-deficient mutant of Arabidopsis. Nature 280: 833–836.
-
(1979)
Nature
, vol.280
, pp. 833-836
-
-
Somerville, C.R.1
Ogren, W.L.2
-
58
-
-
0033452842
-
An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data
-
Stein, S.E. (1999). An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data. J. Am. Soc. Mass Spectrom. 10: 770–781.
-
(1999)
J. Am. Soc. Mass Spectrom
, vol.10
, pp. 770-781
-
-
Stein, S.E.1
-
59
-
-
0029085425
-
Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements
-
Sundaresan, V., Springer, P., Volpe, T., Haward, S., Jones, J.D., Dean, C., Ma, H., and Martienssen, R. (1995). Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes Dev. 9: 1797–1810.
-
(1995)
Genes Dev
, vol.9
, pp. 1797-1810
-
-
Sundaresan, V.1
Springer, P.2
Volpe, T.3
Haward, S.4
Jones, J.D.5
Dean, C.6
Ma, H.7
Martienssen, R.8
-
60
-
-
84977577101
-
2 induction to disease immunity pathways
-
2 induction to disease immunity pathways. Plant Physiol. 171: 1635–1650.
-
(2016)
Plant Physiol
, vol.171
, pp. 1635-1650
-
-
Tian, S.1
Wang, X.2
Li, P.3
Wang, H.4
Ji, H.5
Xie, J.6
Qiu, Q.7
Shen, D.8
Dong, H.9
-
61
-
-
84879469111
-
The variety of photorespiratory phenotypes – employing the current status for future research directions on photorespiration
-
Timm, S., and Bauwe, H. (2013). The variety of photorespiratory phenotypes – employing the current status for future research directions on photorespiration. Plant Biol (Stuttg) 15: 737–747.
-
(2013)
Plant Biol (Stuttg)
, vol.15
, pp. 737-747
-
-
Timm, S.1
Bauwe, H.2
-
62
-
-
60149088490
-
Sucrose, sucrosyl oligo-saccharides, and oxidative stress: Scavenging and salvaging
-
Van den Ende, W., and Valluru, R. (2009). Sucrose, sucrosyl oligo-saccharides, and oxidative stress: scavenging and salvaging? J. Exp. Bot. 60: 9–18.
-
(2009)
J. Exp. Bot
, vol.60
, pp. 9-18
-
-
Van Den Ende, W.1
Valluru, R.2
-
63
-
-
3142575281
-
Catalase deficiency drastically affects gene expression induced by high light in Arabidopsis thaliana
-
Vandenabeele, S., Vanderauwera, S., Vuylsteke, M., Rombauts, S., Langebartels, C., Seidlitz, H.K., Zabeau, M., Van Montagu, M., Inzé, D., and Van Breusegem, F. (2004). Catalase deficiency drastically affects gene expression induced by high light in Arabidopsis thaliana. Plant J. 39: 45–58.
-
(2004)
Plant J
, vol.39
, pp. 45-58
-
-
Vandenabeele, S.1
Vanderauwera, S.2
Vuylsteke, M.3
Rombauts, S.4
Langebartels, C.5
Seidlitz, H.K.6
Zabeau, M.7
Van Montagu, M.8
Inzé, D.9
Van Breusegem, F.10
-
64
-
-
79952182060
-
Extranuclear protection of chromosomal DNA from oxidative stress
-
Vanderauwera, S., Suzuki, N., Miller, G., van de Cotte, B., Morsa, S., Ravanat, J.-L., Hegie, A., Triantaphylidès, C., Shulaev, V., Van Montagu, M.C.E., Van Breusegem, F., and Mittler, R. (2011). Extranuclear protection of chromosomal DNA from oxidative stress. Proc. Natl. Acad. Sci. USA 108: 1711–1716.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 1711-1716
-
-
Vanderauwera, S.1
Suzuki, N.2
Miller, G.3
Van De Cotte, B.4
Morsa, S.5
Ravanat, J.-L.6
Hegie, A.7
Triantaphylidès, C.8
Shulaev, V.9
Van Montagu, M.C.E.10
Van Breusegem, F.11
Mittler, R.12
-
65
-
-
84870599231
-
AtWRKY15 perturbation abolishes the mitochondrial stress response that steers osmotic stress tolerance in Arabidopsis
-
Vanderauwera, S., Vandenbroucke, K., Inzé, A., van de Cotte, B., Mühlenbock, P., De Rycke, R., Naouar, N., Van Gaever, T., Van Montagu, M.C.E., and Van Breusegem, F. (2012). AtWRKY15 perturbation abolishes the mitochondrial stress response that steers osmotic stress tolerance in Arabidopsis. Proc. Natl. Acad. Sci. USA 109: 20113–20118.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 20113-20118
-
-
Vanderauwera, S.1
Vandenbroucke, K.2
Inzé, A.3
Van De Cotte, B.4
Mühlenbock, P.5
De Rycke, R.6
Naouar, N.7
Van Gaever, T.8
Van Montagu, M.C.E.9
Van Breusegem, F.10
-
66
-
-
33644653602
-
Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis
-
Vanderauwera, S., Zimmermann, P., Rombauts, S., Vandenabeele, S., Langebartels, C., Gruissem, W., Inzé, D., and Van Breusegem, F. (2005). Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis. Plant Physiol. 139: 806–821.
-
(2005)
Plant Physiol
, vol.139
, pp. 806-821
-
-
Vanderauwera, S.1
Zimmermann, P.2
Rombauts, S.3
Vandenabeele, S.4
Langebartels, C.5
Gruissem, W.6
Inzé, D.7
Van Breusegem, F.8
-
67
-
-
84882454973
-
Genome-wide transcript analysis of early maize leaf development reveals gene cohorts associated with the differentiation of C4 Kranz anatomy
-
Wang, P., Kelly, S., Fouracre, J.P., and Langdale, J.A. (2013). Genome-wide transcript analysis of early maize leaf development reveals gene cohorts associated with the differentiation of C4 Kranz anatomy. Plant J. 75: 656–670.
-
(2013)
Plant J
, vol.75
, pp. 656-670
-
-
Wang, P.1
Kelly, S.2
Fouracre, J.P.3
Langdale, J.A.4
-
68
-
-
84905667050
-
Sulfenome mining in Arabidopsis thaliana
-
Waszczak, C., et al. (2014). Sulfenome mining in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 111: 11545–11550.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 11545-11550
-
-
Waszczak, C.1
-
69
-
-
84940703366
-
Oxidative post-translational modifications of cysteine residues in plant signal transduction
-
Waszczak, C., Akter, S., Jacques, S., Huang, J., Messens, J., and Van Breusegem, F. (2015). Oxidative post-translational modifications of cysteine residues in plant signal transduction. J. Exp. Bot. 66: 2923–2934.
-
(2015)
J. Exp. Bot
, vol.66
, pp. 2923-2934
-
-
Waszczak, C.1
Akter, S.2
Jacques, S.3
Huang, J.4
Messens, J.5
Van Breusegem, F.6
-
70
-
-
34548423185
-
Arabidopsis JACKDAW and MAGPIE zinc finger proteins delimit asymmetric cell division and stabilize tissue boundaries by restricting SHORT-ROOT action
-
Welch, D., Hassan, H., Blilou, I., Immink, R., Heidstra, R., and Scheres, B. (2007). Arabidopsis JACKDAW and MAGPIE zinc finger proteins delimit asymmetric cell division and stabilize tissue boundaries by restricting SHORT-ROOT action. Genes Dev. 21: 2196–2204.
-
(2007)
Genes Dev
, vol.21
, pp. 2196-2204
-
-
Welch, D.1
Hassan, H.2
Blilou, I.3
Immink, R.4
Heidstra, R.5
Scheres, B.6
-
71
-
-
0041344666
-
Photorespiratory-induced senescence of plants under conditions of low carbon dioxide
-
Widholm, J.M., and Ogren, W.L. (1969). Photorespiratory-induced senescence of plants under conditions of low carbon dioxide. Proc. Natl. Acad. Sci. USA 63: 668–675.
-
(1969)
Proc. Natl. Acad. Sci. USA
, vol.63
, pp. 668-675
-
-
Widholm, J.M.1
Ogren, W.L.2
-
72
-
-
78651484437
-
Characterization of SHORT-ROOT function in the Arabidopsis root vascular system
-
Yu, N.I., Lee, S.A., Lee, M.-H., Heo, J.-O., Chang, K.S., and Lim, J. (2010). Characterization of SHORT-ROOT function in the Arabidopsis root vascular system. Mol. Cells 30: 113–119.
-
(2010)
Mol. Cells
, vol.30
, pp. 113-119
-
-
Yu, N.I.1
Lee, S.A.2
Lee, M.-H.3
Heo, J.-O.4
Chang, K.S.5
Lim, J.6
-
73
-
-
1242274571
-
An Arabidopsis indole-3-butyric acid-response mutant defective in PEROXIN6, an apparent ATPase implicated in peroxisomal function
-
Zolman, B.K., and Bartel, B. (2004). An Arabidopsis indole-3-butyric acid-response mutant defective in PEROXIN6, an apparent ATPase implicated in peroxisomal function. Proc. Natl. Acad. Sci. USA 101: 1786–1791.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 1786-1791
-
-
Zolman, B.K.1
Bartel, B.2
|