-
1
-
-
84864698519
-
Photorespiration and the evolution of C4 photosynthesis
-
Sage, R.F., Sage, T.L. & Kocacinar, F. Photorespiration and the evolution of C4 photosynthesis. Annu. Rev. Plant Biol. 63, 19-47 (2012).
-
(2012)
Annu. Rev. Plant Biol
, vol.63
, pp. 19-47
-
-
Sage, R.F.1
Sage, T.L.2
Kocacinar, F.3
-
2
-
-
77952483338
-
The regulation of gene expression required for C4 photosynthesis
-
Hibberd, J.M. & Covshoff, S. The regulation of gene expression required for C4 photosynthesis. Annu. Rev. Plant Biol. 61, 181-207 (2010).
-
(2010)
Annu. Rev. Plant Biol
, vol.61
, pp. 181-207
-
-
Hibberd, J.M.1
Covshoff, S.2
-
3
-
-
66749133568
-
Rising atmospheric carbon dioxide concentration and the future of C4 crops for food and fuel
-
Leakey, A.D. Rising atmospheric carbon dioxide concentration and the future of C4 crops for food and fuel. Proc. Biol. Sci. 276, 2333-2343 (2009).
-
(2009)
Proc. Biol. Sci
, vol.276
, pp. 2333-2343
-
-
Leakey, A.D.1
-
4
-
-
84881061285
-
Climate change impacts on global food security
-
Wheeler, T. & von Braun, J. Climate change impacts on global food security. Science 341, 508-513 (2013).
-
(2013)
Science
, vol.341
, pp. 508-513
-
-
Wheeler, T.1
Von Braun, J.2
-
5
-
-
70449555431
-
Anatomy of the global food crisis
-
Conceição, P. & Mendoza, R.U. Anatomy of the global food crisis. Third World Q. 30, 1159-1182 (2009).
-
(2009)
Third World Q
, vol.30
, pp. 1159-1182
-
-
Conceição, P.1
Mendoza, R.U.2
-
6
-
-
84862991239
-
The development of C(4)rice: Current progress and future challenges
-
von Caemmerer, S., Quick, W.P. & Furbank, R.T. The development of C(4)rice: current progress and future challenges. Science 336, 1671-1672 (2012).
-
(2012)
Science
, vol.336
, pp. 1671-1672
-
-
Von Caemmerer, S.1
Quick, W.P.2
Furbank, R.T.3
-
7
-
-
84861988565
-
Engineering C4 photosynthetic regulatory networks
-
Weissmann, S. & Brutnell, T.P. Engineering C4 photosynthetic regulatory networks. Curr. Opin. Biotechnol. 23, 298-304 (2012).
-
(2012)
Curr. Opin. Biotechnol
, vol.23
, pp. 298-304
-
-
Weissmann, S.1
Brutnell, T.P.2
-
8
-
-
78649488563
-
The developmental dynamics of the maize leaf transcriptome
-
Li, P. et al. The developmental dynamics of the maize leaf transcriptome. Nat. Genet. 42, 1060-1067 (2010).
-
(2010)
Nat. Genet
, vol.42
, pp. 1060-1067
-
-
Li, P.1
-
9
-
-
84856421612
-
Systems analysis of a maize leaf developmental gradient redefines the current C4 model and provides candidates for regulation
-
Pick, T.R. et al. Systems analysis of a maize leaf developmental gradient redefines the current C4 model and provides candidates for regulation. Plant Cell 23, 4208-4220 (2011).
-
(2011)
Plant Cell
, vol.23
, pp. 4208-4220
-
-
Pick, T.R.1
-
10
-
-
79958822686
-
The grass leaf developmental gradient as a platform for a systems understanding of the anatomical specialization of C(4) leaves
-
Nelson, T. The grass leaf developmental gradient as a platform for a systems understanding of the anatomical specialization of C(4) leaves. J. Exp. Bot. 62, 3039-3048 (2011).
-
(2011)
J. Exp. Bot
, vol.62
, pp. 3039-3048
-
-
Nelson, T.1
-
11
-
-
78649761413
-
Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions
-
Nunes-Nesi, A., Fernie, A.R. & Stitt, M. Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions. Mol. Plant 3, 973-996 (2010).
-
(2010)
Mol. Plant
, vol.3
, pp. 973-996
-
-
Nunes-Nesi, A.1
Fernie, A.R.2
Stitt, M.3
-
12
-
-
84867129056
-
Plant nitrogen assimilation and use efficiency
-
Xu, G., Fan, X. & Miller, A.J. Plant nitrogen assimilation and use efficiency. Annu. Rev. Plant Biol. 63, 153-182 (2012).
-
(2012)
Annu. Rev. Plant Biol
, vol.63
, pp. 153-182
-
-
Xu, G.1
Fan, X.2
Miller, A.J.3
-
13
-
-
80054789260
-
A low-cost library construction protocol and data analysis pipeline for Illumina-based strand-specific multiplex RNA-seq
-
Wang, L. et al. A low-cost library construction protocol and data analysis pipeline for Illumina-based strand-specific multiplex RNA-seq. PLoS ONE 6, e26426 (2011).
-
(2011)
PLoS ONE
, vol.6
, pp. e26426
-
-
Wang, L.1
-
14
-
-
33751381461
-
TimeTree: A public knowledge-base of divergence times among organisms
-
Hedges, S.B., Dudley, J. & Kumar, S. TimeTree: a public knowledge-base of divergence times among organisms. Bioinformatics 22, 2971-2972 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 2971-2972
-
-
Hedges, S.B.1
Dudley, J.2
Kumar, S.3
-
15
-
-
33745626459
-
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
-
Alexa, A., Rahnenfuhrer, J. & Lengauer, T. Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics 22, 1600-1607 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 1600-1607
-
-
Alexa, A.1
Rahnenfuhrer, J.2
Lengauer, T.3
-
16
-
-
0000153725
-
Interaction between external and internal conditions in the development of photosynthetic features in a grass leaf: II. Reversibility of light-induced responses as a function of developmental stages
-
Prioul, J.L., Brangeon, J. & Reyss, A. Interaction between external and internal conditions in the development of photosynthetic features in a grass leaf: II. Reversibility of light-induced responses as a function of developmental stages. Plant Physiol. 66, 770-774 (1980).
-
(1980)
Plant Physiol
, vol.66
, pp. 770-774
-
-
Prioul, J.L.1
Brangeon, J.2
Reyss, A.3
-
17
-
-
84982574625
-
Anatomical variation along the length of the Zea mays leaf in relation to photosynthesis
-
Miranda, V., Baker, N.R. & Long, S.P. Anatomical variation along the length of the Zea mays leaf in relation to photosynthesis. New Phytol. 88, 595-605 (1981).
-
(1981)
New Phytol
, vol.88
, pp. 595-605
-
-
Miranda, V.1
Baker, N.R.2
Long, S.P.3
-
18
-
-
20444405023
-
Starch degradation
-
Smith, A.M., Zeeman, S.C. & Smith, S.M. Starch degradation. Annu. Rev. Plant Biol. 56, 73-98 (2005).
-
(2005)
Annu. Rev. Plant Biol
, vol.56
, pp. 73-98
-
-
Smith, A.M.1
Zeeman, S.C.2
Smith, S.M.3
-
19
-
-
40149093631
-
The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis
-
Mockler, T.C. et al. The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis. Cold Spring Harb. Symp. Quant. Biol. 72, 353-363 (2007).
-
(2007)
Cold Spring Harb. Symp. Quant. Biol
, vol.72
, pp. 353-363
-
-
Mockler, T.C.1
-
20
-
-
66649122827
-
Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks
-
Vandepoele, K., Quimbaya, M., Casneuf, T., De Veylder, L. & Van de Peer, Y. Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks. Plant Physiol. 150, 535-546 (2009).
-
(2009)
Plant Physiol
, vol.150
, pp. 535-546
-
-
Vandepoele, K.1
Quimbaya, M.2
Casneuf, T.3
De Veylder, L.4
Van De Peer, Y.5
-
21
-
-
84355162134
-
Multiple Arabidopsis genes primed for recruitment into C(4) photosynthesis
-
Kajala, K. et al. Multiple Arabidopsis genes primed for recruitment into C(4) photosynthesis. Plant J. 69, 47-56 (2012).
-
(2012)
Plant J
, vol.69
, pp. 47-56
-
-
Kajala, K.1
-
22
-
-
38949151064
-
How to usefully compare homologous plant genes and chromosomes as DNA sequences
-
Lyons, E. & Freeling, M. How to usefully compare homologous plant genes and chromosomes as DNA sequences. Plant J. 53, 661-673 (2008).
-
(2008)
Plant J
, vol.53
, pp. 661-673
-
-
Lyons, E.1
Freeling, M.2
-
23
-
-
0024297354
-
Multiple sequence alignment with hierarchical clustering
-
Corpet, F. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res. 16, 10881-10890 (1988).
-
(1988)
Nucleic Acids Res
, vol.16
, pp. 10881-10890
-
-
Corpet, F.1
-
24
-
-
25144478364
-
Effect of copy number and spacing of the ACGT and GT cis elements on transient expression of minimal promoter in plants
-
Mehrotra, R. et al. Effect of copy number and spacing of the ACGT and GT cis elements on transient expression of minimal promoter in plants. J. Genet. 84, 183-187 (2005).
-
(2005)
J. Genet
, vol.84
, pp. 183-187
-
-
Mehrotra, R.1
-
25
-
-
0033036835
-
Diversity and similarity among recognition sequences of Dof transcription factors
-
Yanagisawa, S. & Schmidt, R.J. Diversity and similarity among recognition sequences of Dof transcription factors. Plant J. 17, 209-214 (1999).
-
(1999)
Plant J
, vol.17
, pp. 209-214
-
-
Yanagisawa, S.1
Schmidt, R.J.2
-
26
-
-
0032793615
-
Phosphoenolpyruvate carboxykinase is involved in the decarboxylation of aspartate in the bundle sheath of maize
-
Wingler, A., Walker, R.P., Chen, Z.H. & Leegood, R.C. Phosphoenolpyruvate carboxykinase is involved in the decarboxylation of aspartate in the bundle sheath of maize. Plant Physiol. 120, 539-546 (1999).
-
(1999)
Plant Physiol
, vol.120
, pp. 539-546
-
-
Wingler, A.1
Walker, R.P.2
Chen, Z.H.3
Leegood, R.C.4
-
27
-
-
20444419804
-
Differential expression pattern of C4 bundle sheath expression genes in rice, a C3 plant
-
Nomura, M. et al. Differential expression pattern of C4 bundle sheath expression genes in rice, a C3 plant. Plant Cell Physiol. 46, 754-761 (2005).
-
(2005)
Plant Cell Physiol
, vol.46
, pp. 754-761
-
-
Nomura, M.1
-
28
-
-
70149100004
-
Assessment of microbial communities by graph partitioning in a study of soil fungi in two Alpine meadows
-
Zinger, L., Coissac, E., Choler, P. & Geremia, R.A. Assessment of microbial communities by graph partitioning in a study of soil fungi in two Alpine meadows. Appl. Environ. Microbiol. 75, 5863-5870 (2009).
-
(2009)
Appl. Environ. Microbiol
, vol.75
, pp. 5863-5870
-
-
Zinger, L.1
Coissac, E.2
Choler, P.3
Geremia, R.A.4
-
29
-
-
79951986028
-
Regulatory mechanisms underlying C(4) photosynthesis
-
Wang, L., Peterson, R.B. & Brutnell, T.P. Regulatory mechanisms underlying C(4) photosynthesis. New Phytol. 190, 9-20 (2011).
-
(2011)
New Phytol
, vol.190
, pp. 9-20
-
-
Wang, L.1
Peterson, R.B.2
Brutnell, T.P.3
-
30
-
-
84055178582
-
Global food demand and the sustainable intensification of agriculture
-
Tilman, D., Balzer, C., Hill, J. & Befort, B.L. Global food demand and the sustainable intensification of agriculture. Proc. Natl. Acad. Sci. USA 108, 20260-20264 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 20260-20264
-
-
Tilman, D.1
Balzer, C.2
Hill, J.3
Befort, B.L.4
-
31
-
-
58449094652
-
GRASSIUS: A platform for comparative regulatory genomics across the grasses
-
Yilmaz, A. et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol. 149, 171-180 (2009).
-
(2009)
Plant Physiol
, vol.149
, pp. 171-180
-
-
Yilmaz, A.1
-
32
-
-
84865839724
-
Characterizing regulatory and functional differentiation between maize mesophyll and bundle sheath cells by transcriptomic analysis
-
Chang, Y.M. et al. Characterizing regulatory and functional differentiation between maize mesophyll and bundle sheath cells by transcriptomic analysis. Plant Physiol. 160, 165-177 (2012).
-
(2012)
Plant Physiol
, vol.160
, pp. 165-177
-
-
Chang, Y.M.1
-
33
-
-
78651513520
-
Suberin research in the genomics era-New interest for an old polymer
-
Ranathunge, K., Schreiber, L. & Franke, R. Suberin research in the genomics era-New interest for an old polymer. Plant Sci. 180, 399-413 (2011).
-
(2011)
Plant Sci
, vol.180
, pp. 399-413
-
-
Ranathunge, K.1
Schreiber, L.2
Franke, R.3
-
34
-
-
0041309088
-
Suberized bundle sheaths in grasses (Poaceae) of different photosynthetic types. 1. Anatomy, ultrastructure and histochemistry
-
Eastman, P.A.K., Dengler, N.G. & Peterson, C.A. Suberized bundle sheaths in grasses (Poaceae) of different photosynthetic types. 1. Anatomy, ultrastructure and histochemistry. Protoplasma 142, 92-111 (1988).
-
(1988)
Protoplasma
, vol.142
, pp. 92-111
-
-
Eastman, P.A.K.1
Dengler, N.G.2
Peterson, C.A.3
-
35
-
-
66249140260
-
Functional and chemical comparison of apoplastic barriers to radial oxygen loss in roots of rice (Oryza sativa L.) grown in aerated or deoxygenated solution
-
Kotula, L., Ranathunge, K., Schreiber, L. & Steudle, E. Functional and chemical comparison of apoplastic barriers to radial oxygen loss in roots of rice (Oryza sativa L.) grown in aerated or deoxygenated solution. J. Exp. Bot. 60, 2155-2167 (2009).
-
(2009)
J. Exp. Bot
, vol.60
, pp. 2155-2167
-
-
Kotula, L.1
Ranathunge, K.2
Schreiber, L.3
Steudle, E.4
-
36
-
-
18444398050
-
The chemical composition of suberin in apoplastic barriers affects radial hydraulic conductivity differently in the roots of rice (Oryza sativa L. Cv. IR64) and corn (Zea mays L. Cv. Helix)
-
Schreiber, L., Franke, R., Hartmann, K.D., Ranathunge, K. & Steudle, E. The chemical composition of suberin in apoplastic barriers affects radial hydraulic conductivity differently in the roots of rice (Oryza sativa L. cv. IR64) and corn (Zea mays L. cv. Helix). J. Exp. Bot. 56, 1427-1436 (2005).
-
(2005)
J. Exp. Bot
, vol.56
, pp. 1427-1436
-
-
Schreiber, L.1
Franke, R.2
Hartmann, K.D.3
Ranathunge, K.4
Steudle, E.5
-
37
-
-
0033166713
-
Chemical analysis and immunolocalisation of lignin and suberin in endodermal and hypodermal/rhizodermal cell walls of developing maize (Zea mays L.) primary roots
-
Zeier, J., Ruel, K., Ryser, U. & Schreiber, L. Chemical analysis and immunolocalisation of lignin and suberin in endodermal and hypodermal/rhizodermal cell walls of developing maize (Zea mays L.) primary roots. Planta 209, 1-12 (1999).
-
(1999)
Planta
, vol.209
, pp. 1-12
-
-
Zeier, J.1
Ruel, K.2
Ryser, U.3
Schreiber, L.4
-
38
-
-
27744465799
-
Apoplastic polyesters in Arabidopsis surface tissues-a typical suberin and a particular cutin
-
Franke, R. et al. Apoplastic polyesters in Arabidopsis surface tissues-a typical suberin and a particular cutin. Phytochemistry 66, 2643-2658 (2005).
-
(2005)
Phytochemistry
, vol.66
, pp. 2643-2658
-
-
Franke, R.1
-
39
-
-
34248182280
-
The acyltransferase GPAT5 is required for the synthesis of suberin in seed coat and root of Arabidopsis
-
Beisson, F., Li, Y.H., Bonaventure, G., Pollard, M. & Ohlrogge, J.B. The acyltransferase GPAT5 is required for the synthesis of suberin in seed coat and root of Arabidopsis. Plant Cell 19, 351-368 (2007).
-
(2007)
Plant Cell
, vol.19
, pp. 351-368
-
-
Beisson, F.1
Li, Y.H.2
Bonaventure, G.3
Pollard, M.4
Ohlrogge, J.B.5
-
40
-
-
68249152552
-
CYP86B1 Is required for very long chain omega-hydroxyacid and alpha,omega-dicarboxylic acid synthesis in root and seed suberin polyester
-
Compagnon, V. et al. CYP86B1 Is required for very long chain omega-hydroxyacid and alpha,omega-dicarboxylic acid synthesis in root and seed suberin polyester. Plant Physiol. 150, 1831-1843 (2009).
-
(2009)
Plant Physiol
, vol.150
, pp. 1831-1843
-
-
Compagnon, V.1
-
41
-
-
73249126984
-
A hydroxycinnamoyltransferase responsible for synthesizing suberin aromatics in Arabidopsis
-
Gou, J.Y., Yu, X.H. & Liu, C.J. A hydroxycinnamoyltransferase responsible for synthesizing suberin aromatics in Arabidopsis. Proc. Natl. Acad. Sci. USA 106, 18855-18860 (2009).
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 18855-18860
-
-
Gou, J.Y.1
Yu, X.H.2
Liu, C.J.3
-
42
-
-
70350633825
-
Identification of an Arabidopsis feruloyl-coenzyme A transferase required for suberin synthesis
-
Molina, I., Li-Beisson, Y., Beisson, F., Ohlrogge, J.B. & Pollard, M. Identification of an Arabidopsis feruloyl-coenzyme A transferase required for suberin synthesis. Plant Physiol. 151, 1317-1328 (2009).
-
(2009)
Plant Physiol
, vol.151
, pp. 1317-1328
-
-
Molina, I.1
Li-Beisson, Y.2
Beisson, F.3
Ohlrogge, J.B.4
Pollard, M.5
-
43
-
-
84862537728
-
Casparian strip diffusion barrier in Arabidopsis is made of a lignin polymer without suberin
-
Naseer, S. et al. Casparian strip diffusion barrier in Arabidopsis is made of a lignin polymer without suberin. Proc. Natl. Acad. Sci. USA 109, 10101-10106 (2012).
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 10101-10106
-
-
Naseer, S.1
-
44
-
-
70349861775
-
Cutin deficiency in the tomato fruit cuticle consistently affects resistance to microbial infection and biomechanical properties, but not transpirational water loss
-
Isaacson, T. et al. Cutin deficiency in the tomato fruit cuticle consistently affects resistance to microbial infection and biomechanical properties, but not transpirational water loss. Plant J. 60, 363-377 (2009).
-
(2009)
Plant J
, vol.60
, pp. 363-377
-
-
Isaacson, T.1
-
45
-
-
84862848537
-
The identification of cutin synthase: Formation of the plant polyester cutin
-
Yeats, T.H. et al. The identification of cutin synthase: formation of the plant polyester cutin. Nat. Chem. Biol. 8, 609-611 (2012).
-
(2012)
Nat. Chem. Biol
, vol.8
, pp. 609-611
-
-
Yeats, T.H.1
-
46
-
-
0002404960
-
Anatomical and ultrastructural changes associated with sink-to-source transition in developing maize leaves
-
Evert, R.F., Russin, W.A. & Bosabalidis, A.M. Anatomical and ultrastructural changes associated with sink-to-source transition in developing maize leaves. Int. J. Plant Sci. 157, 247-261 (1996).
-
(1996)
Int. J. Plant Sci
, vol.157
, pp. 247-261
-
-
Evert, R.F.1
Russin, W.A.2
Bosabalidis, A.M.3
-
47
-
-
84971023693
-
Development of the suberized lamella in the mestome sheath of wheat leaves
-
O'Brien, T.P. & Kuo, J. Development of the suberized lamella in the mestome sheath of wheat leaves. Aust. J. Bot. 23, 783-794 (1975).
-
(1975)
Aust. J. Bot
, vol.23
, pp. 783-794
-
-
O'Brien, T.P.1
Kuo, J.2
-
48
-
-
57749119425
-
A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis
-
Zhong, R., Lee, C., Zhou, J., McCarthy, R.L. & Ye, Z.H. A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis. Plant Cell 20, 2763-2782 (2008).
-
(2008)
Plant Cell
, vol.20
, pp. 2763-2782
-
-
Zhong, R.1
Lee, C.2
Zhou, J.3
McCarthy, R.L.4
Ye, Z.H.5
-
49
-
-
62549142281
-
MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis
-
Zhou, J., Lee, C., Zhong, R. & Ye, Z.H. MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis. Plant Cell 21, 248-266 (2009).
-
(2009)
Plant Cell
, vol.21
, pp. 248-266
-
-
Zhou, J.1
Lee, C.2
Zhong, R.3
Ye, Z.H.4
-
50
-
-
77956704541
-
Overexpression of the epidermis-specific homeodomain-leucine zipper IV transcription factor OUTER CELL LAYER1 in maize identifies target genes involved in lipid metabolism and cuticle biosynthesis
-
Javelle, M. et al. Overexpression of the epidermis-specific homeodomain-leucine zipper IV transcription factor OUTER CELL LAYER1 in maize identifies target genes involved in lipid metabolism and cuticle biosynthesis. Plant Physiol. 154, 273-286 (2010).
-
(2010)
Plant Physiol
, vol.154
, pp. 273-286
-
-
Javelle, M.1
-
51
-
-
0345403931
-
A phenylalanine ammonia-lyase gene from parsley: Structure, regulation and identification of elicitor and light responsive cis-acting elements
-
Lois, R., Dietrich, A., Hahlbrock, K. & Schulz, W. A phenylalanine ammonia-lyase gene from parsley: structure, regulation and identification of elicitor and light responsive cis-acting elements. EMBO J. 8, 1641-1648 (1989).
-
(1989)
EMBO J
, vol.8
, pp. 1641-1648
-
-
Lois, R.1
Dietrich, A.2
Hahlbrock, K.3
Schulz, W.4
-
52
-
-
0029853904
-
Interaction of elicitor-induced DNA-binding proteins with elicitor response elements in the promoters of parsley PR1 genes
-
Rushton, P.J. et al. Interaction of elicitor-induced DNA-binding proteins with elicitor response elements in the promoters of parsley PR1 genes. EMBO J. 15, 5690-5700 (1996).
-
(1996)
EMBO J
, vol.15
, pp. 5690-5700
-
-
Rushton, P.J.1
-
53
-
-
33646907417
-
AGRIS and AtRegNet. A platform to link cis-regulatory elements and transcription factors into regulatory networks
-
Palaniswamy, S.K. et al. AGRIS and AtRegNet. A platform to link cis-regulatory elements and transcription factors into regulatory networks. Plant Physiol. 140, 818-829 (2006).
-
(2006)
Plant Physiol
, vol.140
, pp. 818-829
-
-
Palaniswamy, S.K.1
-
54
-
-
0347492019
-
AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors
-
Davuluri, R.V. et al. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics 4, 25 (2003).
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 25
-
-
Davuluri, R.V.1
-
55
-
-
73249145845
-
Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis
-
Mustroph, A. et al. Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis. Proc. Natl. Acad. Sci. USA 106, 18843-18848 (2009).
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 18843-18848
-
-
Mustroph, A.1
-
56
-
-
40349091686
-
An "electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets
-
Winter, D. et al. An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets. PLoS ONE 2, e718 (2007).
-
(2007)
PLoS ONE
, vol.2
, pp. e718
-
-
Winter, D.1
-
57
-
-
0001393755
-
Generation and maintenance of concentration gradients between the mesophyll and bundle sheath in maize leaves
-
Stitt, M. & Heldt, H.W. Generation and maintenance of concentration gradients between the mesophyll and bundle sheath in maize leaves. Biochimica et Biophysica Acta (BBA). Bioenergetics 808, 400-414 (1985).
-
(1985)
Biochimica et Biophysica Acta (BBA). Bioenergetics
, vol.808
, pp. 400-414
-
-
Stitt, M.1
Heldt, H.W.2
-
59
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable, P.S. et al. The B73 maize genome: complexity, diversity, and dynamics. Science 326, 1112-1115 (2009).
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
-
60
-
-
33746843948
-
Supercharging rice photosynthesis to increase yield
-
Mitchell, P.L. & Sheehy, J.E. Supercharging rice photosynthesis to increase yield. New Phytol. 171, 688-693 (2006).
-
(2006)
New Phytol
, vol.171
, pp. 688-693
-
-
Mitchell, P.L.1
Sheehy, J.E.2
-
61
-
-
84941599050
-
The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria
-
Mallmann, J. et al. The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria. Elife e02478 (2014).
-
(2014)
Elife
, pp. e02478
-
-
Mallmann, J.1
-
62
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L. & Salzberg, S.L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
63
-
-
84872198346
-
Differential analysis of gene regulation at transcript resolution with RNA-seq
-
Trapnell, C. et al. Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat. Biotechnol. 31, 46-53 (2013).
-
(2013)
Nat. Biotechnol
, vol.31
, pp. 46-53
-
-
Trapnell, C.1
-
64
-
-
84875807067
-
BBH-LS: An algorithm for computing positional homologs using sequence and gene context similarity
-
Zhang, M. & Leong, H.W. BBH-LS: an algorithm for computing positional homologs using sequence and gene context similarity. BMC Syst. Biol. 6 (suppl. 1), S22 (2012).
-
(2012)
BMC Syst. Biol
, vol.6
, pp. S22
-
-
Zhang, M.1
Leong, H.W.2
-
65
-
-
18444402182
-
The Ensembl genome database project
-
Hubbard, T. et al. The Ensembl genome database project. Nucleic Acids Res. 30, 38-41 (2002).
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 38-41
-
-
Hubbard, T.1
-
66
-
-
76749129703
-
MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement
-
Shi, G., Zhang, L. & Jiang, T. MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement. BMC Bioinformatics 11, 10 (2010).
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 10
-
-
Shi, G.1
Zhang, L.2
Jiang, T.3
-
67
-
-
75549086594
-
InParanoid 7: New algorithms and tools for eukaryotic orthology analysis
-
Ostlund, G. et al. InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. Nucleic Acids Res. 38, D196-D203 (2010).
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D196-D203
-
-
Ostlund, G.1
-
68
-
-
33644787447
-
OrthoMCL-DB: Querying a comprehensive multi-species collection of ortholog groups
-
Chen, F., Mackey, A.J., Stoeckert, C.J. Jr. & Roos, D.S. OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res. 34, D363-D368 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D363-D368
-
-
Chen, F.1
Mackey, A.J.2
Stoeckert, C.J.3
Roos, D.S.4
-
69
-
-
45549089420
-
High-throughput functional annotation and data mining with the Blast2GO suite
-
Götz, S. et al. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 36, 3420-3435 (2008).
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3420-3435
-
-
Götz, S.1
-
70
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks, G.E., Hon, G., Chandonia, J.M. & Brenner, S.E. WebLogo: a sequence logo generator. Genome Res. 14, 1188-1190 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
71
-
-
77954396635
-
Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function
-
Tohge, T. & Fernie, A.R. Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function. Nat. Protoc. 5, 1210-1227 (2010).
-
(2010)
Nat. Protoc
, vol.5
, pp. 1210-1227
-
-
Tohge, T.1
Fernie, A.R.2
-
72
-
-
62549159971
-
Web-based resources for mass-spectrometry-based metabolomics: A user's guide
-
Tohge, T. & Fernie, A.R. Web-based resources for mass-spectrometry-based metabolomics: A user's guide. Phytochemistry 70, 450-456 (2009).
-
(2009)
Phytochemistry
, vol.70
, pp. 450-456
-
-
Tohge, T.1
Fernie, A.R.2
-
73
-
-
0001621059
-
C-glycosylflavones from Zea-mays that inhibit insect development
-
Elliger, C.A., Chan, B.G., Waiss, A.C., Lundin, R.E. & Haddon, W.F. C-glycosylflavones from Zea-mays that inhibit insect development. Phytochemistry 19, 293-297 (1980).
-
(1980)
Phytochemistry
, vol.19
, pp. 293-297
-
-
Elliger, C.A.1
Chan, B.G.2
Waiss, A.C.3
Lundin, R.E.4
Haddon, W.F.5
-
74
-
-
0001554933
-
New C-4?-hydroxy derivatives of maysin and 3'-methoxymaysin isolated from corn silks (Zea-mays)
-
Snook, M.E. et al. New C-4?-hydroxy derivatives of maysin and 3'-methoxymaysin isolated from corn silks (Zea-mays). J. Agric. Food Chem. 43, 2740-2745 (1995).
-
(1995)
J. Agric. Food Chem
, vol.43
, pp. 2740-2745
-
-
Snook, M.E.1
-
75
-
-
80455173508
-
Toward the storage metabolome: Profiling the barley vacuole
-
Tohge, T. et al. Toward the storage metabolome: profiling the barley vacuole. Plant Physiol. 157, 1469-1482 (2011).
-
(2011)
Plant Physiol
, vol.157
, pp. 1469-1482
-
-
Tohge, T.1
-
76
-
-
84861337100
-
Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis
-
Matsuda, F. et al. Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis. Plant J. 70, 624-636 (2012).
-
(2012)
Plant J
, vol.70
, pp. 624-636
-
-
Matsuda, F.1
-
77
-
-
14744280370
-
A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness
-
Gibon, Y. et al. A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16, 3304-3325 (2004).
-
(2004)
Plant Cell
, vol.16
, pp. 3304-3325
-
-
Gibon, Y.1
-
78
-
-
77957766623
-
Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions
-
Sulpice, R. et al. Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. Plant Cell 22, 2872-2893 (2010).
-
(2010)
Plant Cell
, vol.22
, pp. 2872-2893
-
-
Sulpice, R.1
|