메뉴 건너뛰기




Volumn 32, Issue 11, 2014, Pages 1158-1164

Comparative analyses of C4 and C3 photosynthesis in developing leaves of maize and rice

(28)  Wang, Lin a,k   Czedik Eysenberg, Angelika b   Mertz, Rachel A a   Si, Yaqing c,k,l   Tohge, Takayuki b   Nunes Nesi, Adriano b,k,m   Arrivault, Stephanie b   Dedow, Lauren K a,k,n   Bryant, Douglas W a   Zhou, Wen c   Xu, Jiajia d   Weissmann, Sarit a   Studer, Anthony a   Li, Pinghua e,k,o   Zhang, Cankui f,k   LaRue, Therese g   Shao, Ying a,k,p   Ding, Zehong e   Sun, Qi h   Patel, Rohan V i   more..


Author keywords

[No Author keywords available]

Indexed keywords

CROPS; GENE EXPRESSION; GRAIN (AGRICULTURAL PRODUCT); NITROGEN; PLANTS (BOTANY); TRANSCRIPTION;

EID: 84983189032     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.3019     Document Type: Article
Times cited : (214)

References (78)
  • 1
    • 84864698519 scopus 로고    scopus 로고
    • Photorespiration and the evolution of C4 photosynthesis
    • Sage, R.F., Sage, T.L. & Kocacinar, F. Photorespiration and the evolution of C4 photosynthesis. Annu. Rev. Plant Biol. 63, 19-47 (2012).
    • (2012) Annu. Rev. Plant Biol , vol.63 , pp. 19-47
    • Sage, R.F.1    Sage, T.L.2    Kocacinar, F.3
  • 2
    • 77952483338 scopus 로고    scopus 로고
    • The regulation of gene expression required for C4 photosynthesis
    • Hibberd, J.M. & Covshoff, S. The regulation of gene expression required for C4 photosynthesis. Annu. Rev. Plant Biol. 61, 181-207 (2010).
    • (2010) Annu. Rev. Plant Biol , vol.61 , pp. 181-207
    • Hibberd, J.M.1    Covshoff, S.2
  • 3
    • 66749133568 scopus 로고    scopus 로고
    • Rising atmospheric carbon dioxide concentration and the future of C4 crops for food and fuel
    • Leakey, A.D. Rising atmospheric carbon dioxide concentration and the future of C4 crops for food and fuel. Proc. Biol. Sci. 276, 2333-2343 (2009).
    • (2009) Proc. Biol. Sci , vol.276 , pp. 2333-2343
    • Leakey, A.D.1
  • 4
    • 84881061285 scopus 로고    scopus 로고
    • Climate change impacts on global food security
    • Wheeler, T. & von Braun, J. Climate change impacts on global food security. Science 341, 508-513 (2013).
    • (2013) Science , vol.341 , pp. 508-513
    • Wheeler, T.1    Von Braun, J.2
  • 5
    • 70449555431 scopus 로고    scopus 로고
    • Anatomy of the global food crisis
    • Conceição, P. & Mendoza, R.U. Anatomy of the global food crisis. Third World Q. 30, 1159-1182 (2009).
    • (2009) Third World Q , vol.30 , pp. 1159-1182
    • Conceição, P.1    Mendoza, R.U.2
  • 6
    • 84862991239 scopus 로고    scopus 로고
    • The development of C(4)rice: Current progress and future challenges
    • von Caemmerer, S., Quick, W.P. & Furbank, R.T. The development of C(4)rice: current progress and future challenges. Science 336, 1671-1672 (2012).
    • (2012) Science , vol.336 , pp. 1671-1672
    • Von Caemmerer, S.1    Quick, W.P.2    Furbank, R.T.3
  • 7
    • 84861988565 scopus 로고    scopus 로고
    • Engineering C4 photosynthetic regulatory networks
    • Weissmann, S. & Brutnell, T.P. Engineering C4 photosynthetic regulatory networks. Curr. Opin. Biotechnol. 23, 298-304 (2012).
    • (2012) Curr. Opin. Biotechnol , vol.23 , pp. 298-304
    • Weissmann, S.1    Brutnell, T.P.2
  • 8
    • 78649488563 scopus 로고    scopus 로고
    • The developmental dynamics of the maize leaf transcriptome
    • Li, P. et al. The developmental dynamics of the maize leaf transcriptome. Nat. Genet. 42, 1060-1067 (2010).
    • (2010) Nat. Genet , vol.42 , pp. 1060-1067
    • Li, P.1
  • 9
    • 84856421612 scopus 로고    scopus 로고
    • Systems analysis of a maize leaf developmental gradient redefines the current C4 model and provides candidates for regulation
    • Pick, T.R. et al. Systems analysis of a maize leaf developmental gradient redefines the current C4 model and provides candidates for regulation. Plant Cell 23, 4208-4220 (2011).
    • (2011) Plant Cell , vol.23 , pp. 4208-4220
    • Pick, T.R.1
  • 10
    • 79958822686 scopus 로고    scopus 로고
    • The grass leaf developmental gradient as a platform for a systems understanding of the anatomical specialization of C(4) leaves
    • Nelson, T. The grass leaf developmental gradient as a platform for a systems understanding of the anatomical specialization of C(4) leaves. J. Exp. Bot. 62, 3039-3048 (2011).
    • (2011) J. Exp. Bot , vol.62 , pp. 3039-3048
    • Nelson, T.1
  • 11
    • 78649761413 scopus 로고    scopus 로고
    • Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions
    • Nunes-Nesi, A., Fernie, A.R. & Stitt, M. Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions. Mol. Plant 3, 973-996 (2010).
    • (2010) Mol. Plant , vol.3 , pp. 973-996
    • Nunes-Nesi, A.1    Fernie, A.R.2    Stitt, M.3
  • 12
    • 84867129056 scopus 로고    scopus 로고
    • Plant nitrogen assimilation and use efficiency
    • Xu, G., Fan, X. & Miller, A.J. Plant nitrogen assimilation and use efficiency. Annu. Rev. Plant Biol. 63, 153-182 (2012).
    • (2012) Annu. Rev. Plant Biol , vol.63 , pp. 153-182
    • Xu, G.1    Fan, X.2    Miller, A.J.3
  • 13
    • 80054789260 scopus 로고    scopus 로고
    • A low-cost library construction protocol and data analysis pipeline for Illumina-based strand-specific multiplex RNA-seq
    • Wang, L. et al. A low-cost library construction protocol and data analysis pipeline for Illumina-based strand-specific multiplex RNA-seq. PLoS ONE 6, e26426 (2011).
    • (2011) PLoS ONE , vol.6 , pp. e26426
    • Wang, L.1
  • 14
    • 33751381461 scopus 로고    scopus 로고
    • TimeTree: A public knowledge-base of divergence times among organisms
    • Hedges, S.B., Dudley, J. & Kumar, S. TimeTree: a public knowledge-base of divergence times among organisms. Bioinformatics 22, 2971-2972 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 2971-2972
    • Hedges, S.B.1    Dudley, J.2    Kumar, S.3
  • 15
    • 33745626459 scopus 로고    scopus 로고
    • Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
    • Alexa, A., Rahnenfuhrer, J. & Lengauer, T. Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics 22, 1600-1607 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 1600-1607
    • Alexa, A.1    Rahnenfuhrer, J.2    Lengauer, T.3
  • 16
    • 0000153725 scopus 로고
    • Interaction between external and internal conditions in the development of photosynthetic features in a grass leaf: II. Reversibility of light-induced responses as a function of developmental stages
    • Prioul, J.L., Brangeon, J. & Reyss, A. Interaction between external and internal conditions in the development of photosynthetic features in a grass leaf: II. Reversibility of light-induced responses as a function of developmental stages. Plant Physiol. 66, 770-774 (1980).
    • (1980) Plant Physiol , vol.66 , pp. 770-774
    • Prioul, J.L.1    Brangeon, J.2    Reyss, A.3
  • 17
    • 84982574625 scopus 로고
    • Anatomical variation along the length of the Zea mays leaf in relation to photosynthesis
    • Miranda, V., Baker, N.R. & Long, S.P. Anatomical variation along the length of the Zea mays leaf in relation to photosynthesis. New Phytol. 88, 595-605 (1981).
    • (1981) New Phytol , vol.88 , pp. 595-605
    • Miranda, V.1    Baker, N.R.2    Long, S.P.3
  • 19
    • 40149093631 scopus 로고    scopus 로고
    • The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis
    • Mockler, T.C. et al. The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis. Cold Spring Harb. Symp. Quant. Biol. 72, 353-363 (2007).
    • (2007) Cold Spring Harb. Symp. Quant. Biol , vol.72 , pp. 353-363
    • Mockler, T.C.1
  • 20
    • 66649122827 scopus 로고    scopus 로고
    • Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks
    • Vandepoele, K., Quimbaya, M., Casneuf, T., De Veylder, L. & Van de Peer, Y. Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks. Plant Physiol. 150, 535-546 (2009).
    • (2009) Plant Physiol , vol.150 , pp. 535-546
    • Vandepoele, K.1    Quimbaya, M.2    Casneuf, T.3    De Veylder, L.4    Van De Peer, Y.5
  • 21
    • 84355162134 scopus 로고    scopus 로고
    • Multiple Arabidopsis genes primed for recruitment into C(4) photosynthesis
    • Kajala, K. et al. Multiple Arabidopsis genes primed for recruitment into C(4) photosynthesis. Plant J. 69, 47-56 (2012).
    • (2012) Plant J , vol.69 , pp. 47-56
    • Kajala, K.1
  • 22
    • 38949151064 scopus 로고    scopus 로고
    • How to usefully compare homologous plant genes and chromosomes as DNA sequences
    • Lyons, E. & Freeling, M. How to usefully compare homologous plant genes and chromosomes as DNA sequences. Plant J. 53, 661-673 (2008).
    • (2008) Plant J , vol.53 , pp. 661-673
    • Lyons, E.1    Freeling, M.2
  • 23
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet, F. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res. 16, 10881-10890 (1988).
    • (1988) Nucleic Acids Res , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 24
    • 25144478364 scopus 로고    scopus 로고
    • Effect of copy number and spacing of the ACGT and GT cis elements on transient expression of minimal promoter in plants
    • Mehrotra, R. et al. Effect of copy number and spacing of the ACGT and GT cis elements on transient expression of minimal promoter in plants. J. Genet. 84, 183-187 (2005).
    • (2005) J. Genet , vol.84 , pp. 183-187
    • Mehrotra, R.1
  • 25
    • 0033036835 scopus 로고    scopus 로고
    • Diversity and similarity among recognition sequences of Dof transcription factors
    • Yanagisawa, S. & Schmidt, R.J. Diversity and similarity among recognition sequences of Dof transcription factors. Plant J. 17, 209-214 (1999).
    • (1999) Plant J , vol.17 , pp. 209-214
    • Yanagisawa, S.1    Schmidt, R.J.2
  • 26
    • 0032793615 scopus 로고    scopus 로고
    • Phosphoenolpyruvate carboxykinase is involved in the decarboxylation of aspartate in the bundle sheath of maize
    • Wingler, A., Walker, R.P., Chen, Z.H. & Leegood, R.C. Phosphoenolpyruvate carboxykinase is involved in the decarboxylation of aspartate in the bundle sheath of maize. Plant Physiol. 120, 539-546 (1999).
    • (1999) Plant Physiol , vol.120 , pp. 539-546
    • Wingler, A.1    Walker, R.P.2    Chen, Z.H.3    Leegood, R.C.4
  • 27
    • 20444419804 scopus 로고    scopus 로고
    • Differential expression pattern of C4 bundle sheath expression genes in rice, a C3 plant
    • Nomura, M. et al. Differential expression pattern of C4 bundle sheath expression genes in rice, a C3 plant. Plant Cell Physiol. 46, 754-761 (2005).
    • (2005) Plant Cell Physiol , vol.46 , pp. 754-761
    • Nomura, M.1
  • 28
    • 70149100004 scopus 로고    scopus 로고
    • Assessment of microbial communities by graph partitioning in a study of soil fungi in two Alpine meadows
    • Zinger, L., Coissac, E., Choler, P. & Geremia, R.A. Assessment of microbial communities by graph partitioning in a study of soil fungi in two Alpine meadows. Appl. Environ. Microbiol. 75, 5863-5870 (2009).
    • (2009) Appl. Environ. Microbiol , vol.75 , pp. 5863-5870
    • Zinger, L.1    Coissac, E.2    Choler, P.3    Geremia, R.A.4
  • 29
    • 79951986028 scopus 로고    scopus 로고
    • Regulatory mechanisms underlying C(4) photosynthesis
    • Wang, L., Peterson, R.B. & Brutnell, T.P. Regulatory mechanisms underlying C(4) photosynthesis. New Phytol. 190, 9-20 (2011).
    • (2011) New Phytol , vol.190 , pp. 9-20
    • Wang, L.1    Peterson, R.B.2    Brutnell, T.P.3
  • 30
    • 84055178582 scopus 로고    scopus 로고
    • Global food demand and the sustainable intensification of agriculture
    • Tilman, D., Balzer, C., Hill, J. & Befort, B.L. Global food demand and the sustainable intensification of agriculture. Proc. Natl. Acad. Sci. USA 108, 20260-20264 (2011).
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 20260-20264
    • Tilman, D.1    Balzer, C.2    Hill, J.3    Befort, B.L.4
  • 31
    • 58449094652 scopus 로고    scopus 로고
    • GRASSIUS: A platform for comparative regulatory genomics across the grasses
    • Yilmaz, A. et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol. 149, 171-180 (2009).
    • (2009) Plant Physiol , vol.149 , pp. 171-180
    • Yilmaz, A.1
  • 32
    • 84865839724 scopus 로고    scopus 로고
    • Characterizing regulatory and functional differentiation between maize mesophyll and bundle sheath cells by transcriptomic analysis
    • Chang, Y.M. et al. Characterizing regulatory and functional differentiation between maize mesophyll and bundle sheath cells by transcriptomic analysis. Plant Physiol. 160, 165-177 (2012).
    • (2012) Plant Physiol , vol.160 , pp. 165-177
    • Chang, Y.M.1
  • 33
    • 78651513520 scopus 로고    scopus 로고
    • Suberin research in the genomics era-New interest for an old polymer
    • Ranathunge, K., Schreiber, L. & Franke, R. Suberin research in the genomics era-New interest for an old polymer. Plant Sci. 180, 399-413 (2011).
    • (2011) Plant Sci , vol.180 , pp. 399-413
    • Ranathunge, K.1    Schreiber, L.2    Franke, R.3
  • 34
    • 0041309088 scopus 로고
    • Suberized bundle sheaths in grasses (Poaceae) of different photosynthetic types. 1. Anatomy, ultrastructure and histochemistry
    • Eastman, P.A.K., Dengler, N.G. & Peterson, C.A. Suberized bundle sheaths in grasses (Poaceae) of different photosynthetic types. 1. Anatomy, ultrastructure and histochemistry. Protoplasma 142, 92-111 (1988).
    • (1988) Protoplasma , vol.142 , pp. 92-111
    • Eastman, P.A.K.1    Dengler, N.G.2    Peterson, C.A.3
  • 35
    • 66249140260 scopus 로고    scopus 로고
    • Functional and chemical comparison of apoplastic barriers to radial oxygen loss in roots of rice (Oryza sativa L.) grown in aerated or deoxygenated solution
    • Kotula, L., Ranathunge, K., Schreiber, L. & Steudle, E. Functional and chemical comparison of apoplastic barriers to radial oxygen loss in roots of rice (Oryza sativa L.) grown in aerated or deoxygenated solution. J. Exp. Bot. 60, 2155-2167 (2009).
    • (2009) J. Exp. Bot , vol.60 , pp. 2155-2167
    • Kotula, L.1    Ranathunge, K.2    Schreiber, L.3    Steudle, E.4
  • 36
    • 18444398050 scopus 로고    scopus 로고
    • The chemical composition of suberin in apoplastic barriers affects radial hydraulic conductivity differently in the roots of rice (Oryza sativa L. Cv. IR64) and corn (Zea mays L. Cv. Helix)
    • Schreiber, L., Franke, R., Hartmann, K.D., Ranathunge, K. & Steudle, E. The chemical composition of suberin in apoplastic barriers affects radial hydraulic conductivity differently in the roots of rice (Oryza sativa L. cv. IR64) and corn (Zea mays L. cv. Helix). J. Exp. Bot. 56, 1427-1436 (2005).
    • (2005) J. Exp. Bot , vol.56 , pp. 1427-1436
    • Schreiber, L.1    Franke, R.2    Hartmann, K.D.3    Ranathunge, K.4    Steudle, E.5
  • 37
    • 0033166713 scopus 로고    scopus 로고
    • Chemical analysis and immunolocalisation of lignin and suberin in endodermal and hypodermal/rhizodermal cell walls of developing maize (Zea mays L.) primary roots
    • Zeier, J., Ruel, K., Ryser, U. & Schreiber, L. Chemical analysis and immunolocalisation of lignin and suberin in endodermal and hypodermal/rhizodermal cell walls of developing maize (Zea mays L.) primary roots. Planta 209, 1-12 (1999).
    • (1999) Planta , vol.209 , pp. 1-12
    • Zeier, J.1    Ruel, K.2    Ryser, U.3    Schreiber, L.4
  • 38
    • 27744465799 scopus 로고    scopus 로고
    • Apoplastic polyesters in Arabidopsis surface tissues-a typical suberin and a particular cutin
    • Franke, R. et al. Apoplastic polyesters in Arabidopsis surface tissues-a typical suberin and a particular cutin. Phytochemistry 66, 2643-2658 (2005).
    • (2005) Phytochemistry , vol.66 , pp. 2643-2658
    • Franke, R.1
  • 39
    • 34248182280 scopus 로고    scopus 로고
    • The acyltransferase GPAT5 is required for the synthesis of suberin in seed coat and root of Arabidopsis
    • Beisson, F., Li, Y.H., Bonaventure, G., Pollard, M. & Ohlrogge, J.B. The acyltransferase GPAT5 is required for the synthesis of suberin in seed coat and root of Arabidopsis. Plant Cell 19, 351-368 (2007).
    • (2007) Plant Cell , vol.19 , pp. 351-368
    • Beisson, F.1    Li, Y.H.2    Bonaventure, G.3    Pollard, M.4    Ohlrogge, J.B.5
  • 40
    • 68249152552 scopus 로고    scopus 로고
    • CYP86B1 Is required for very long chain omega-hydroxyacid and alpha,omega-dicarboxylic acid synthesis in root and seed suberin polyester
    • Compagnon, V. et al. CYP86B1 Is required for very long chain omega-hydroxyacid and alpha,omega-dicarboxylic acid synthesis in root and seed suberin polyester. Plant Physiol. 150, 1831-1843 (2009).
    • (2009) Plant Physiol , vol.150 , pp. 1831-1843
    • Compagnon, V.1
  • 41
    • 73249126984 scopus 로고    scopus 로고
    • A hydroxycinnamoyltransferase responsible for synthesizing suberin aromatics in Arabidopsis
    • Gou, J.Y., Yu, X.H. & Liu, C.J. A hydroxycinnamoyltransferase responsible for synthesizing suberin aromatics in Arabidopsis. Proc. Natl. Acad. Sci. USA 106, 18855-18860 (2009).
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 18855-18860
    • Gou, J.Y.1    Yu, X.H.2    Liu, C.J.3
  • 42
    • 70350633825 scopus 로고    scopus 로고
    • Identification of an Arabidopsis feruloyl-coenzyme A transferase required for suberin synthesis
    • Molina, I., Li-Beisson, Y., Beisson, F., Ohlrogge, J.B. & Pollard, M. Identification of an Arabidopsis feruloyl-coenzyme A transferase required for suberin synthesis. Plant Physiol. 151, 1317-1328 (2009).
    • (2009) Plant Physiol , vol.151 , pp. 1317-1328
    • Molina, I.1    Li-Beisson, Y.2    Beisson, F.3    Ohlrogge, J.B.4    Pollard, M.5
  • 43
    • 84862537728 scopus 로고    scopus 로고
    • Casparian strip diffusion barrier in Arabidopsis is made of a lignin polymer without suberin
    • Naseer, S. et al. Casparian strip diffusion barrier in Arabidopsis is made of a lignin polymer without suberin. Proc. Natl. Acad. Sci. USA 109, 10101-10106 (2012).
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 10101-10106
    • Naseer, S.1
  • 44
    • 70349861775 scopus 로고    scopus 로고
    • Cutin deficiency in the tomato fruit cuticle consistently affects resistance to microbial infection and biomechanical properties, but not transpirational water loss
    • Isaacson, T. et al. Cutin deficiency in the tomato fruit cuticle consistently affects resistance to microbial infection and biomechanical properties, but not transpirational water loss. Plant J. 60, 363-377 (2009).
    • (2009) Plant J , vol.60 , pp. 363-377
    • Isaacson, T.1
  • 45
    • 84862848537 scopus 로고    scopus 로고
    • The identification of cutin synthase: Formation of the plant polyester cutin
    • Yeats, T.H. et al. The identification of cutin synthase: formation of the plant polyester cutin. Nat. Chem. Biol. 8, 609-611 (2012).
    • (2012) Nat. Chem. Biol , vol.8 , pp. 609-611
    • Yeats, T.H.1
  • 46
    • 0002404960 scopus 로고    scopus 로고
    • Anatomical and ultrastructural changes associated with sink-to-source transition in developing maize leaves
    • Evert, R.F., Russin, W.A. & Bosabalidis, A.M. Anatomical and ultrastructural changes associated with sink-to-source transition in developing maize leaves. Int. J. Plant Sci. 157, 247-261 (1996).
    • (1996) Int. J. Plant Sci , vol.157 , pp. 247-261
    • Evert, R.F.1    Russin, W.A.2    Bosabalidis, A.M.3
  • 47
    • 84971023693 scopus 로고
    • Development of the suberized lamella in the mestome sheath of wheat leaves
    • O'Brien, T.P. & Kuo, J. Development of the suberized lamella in the mestome sheath of wheat leaves. Aust. J. Bot. 23, 783-794 (1975).
    • (1975) Aust. J. Bot , vol.23 , pp. 783-794
    • O'Brien, T.P.1    Kuo, J.2
  • 48
    • 57749119425 scopus 로고    scopus 로고
    • A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis
    • Zhong, R., Lee, C., Zhou, J., McCarthy, R.L. & Ye, Z.H. A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis. Plant Cell 20, 2763-2782 (2008).
    • (2008) Plant Cell , vol.20 , pp. 2763-2782
    • Zhong, R.1    Lee, C.2    Zhou, J.3    McCarthy, R.L.4    Ye, Z.H.5
  • 49
    • 62549142281 scopus 로고    scopus 로고
    • MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis
    • Zhou, J., Lee, C., Zhong, R. & Ye, Z.H. MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis. Plant Cell 21, 248-266 (2009).
    • (2009) Plant Cell , vol.21 , pp. 248-266
    • Zhou, J.1    Lee, C.2    Zhong, R.3    Ye, Z.H.4
  • 50
    • 77956704541 scopus 로고    scopus 로고
    • Overexpression of the epidermis-specific homeodomain-leucine zipper IV transcription factor OUTER CELL LAYER1 in maize identifies target genes involved in lipid metabolism and cuticle biosynthesis
    • Javelle, M. et al. Overexpression of the epidermis-specific homeodomain-leucine zipper IV transcription factor OUTER CELL LAYER1 in maize identifies target genes involved in lipid metabolism and cuticle biosynthesis. Plant Physiol. 154, 273-286 (2010).
    • (2010) Plant Physiol , vol.154 , pp. 273-286
    • Javelle, M.1
  • 51
    • 0345403931 scopus 로고
    • A phenylalanine ammonia-lyase gene from parsley: Structure, regulation and identification of elicitor and light responsive cis-acting elements
    • Lois, R., Dietrich, A., Hahlbrock, K. & Schulz, W. A phenylalanine ammonia-lyase gene from parsley: structure, regulation and identification of elicitor and light responsive cis-acting elements. EMBO J. 8, 1641-1648 (1989).
    • (1989) EMBO J , vol.8 , pp. 1641-1648
    • Lois, R.1    Dietrich, A.2    Hahlbrock, K.3    Schulz, W.4
  • 52
    • 0029853904 scopus 로고    scopus 로고
    • Interaction of elicitor-induced DNA-binding proteins with elicitor response elements in the promoters of parsley PR1 genes
    • Rushton, P.J. et al. Interaction of elicitor-induced DNA-binding proteins with elicitor response elements in the promoters of parsley PR1 genes. EMBO J. 15, 5690-5700 (1996).
    • (1996) EMBO J , vol.15 , pp. 5690-5700
    • Rushton, P.J.1
  • 53
    • 33646907417 scopus 로고    scopus 로고
    • AGRIS and AtRegNet. A platform to link cis-regulatory elements and transcription factors into regulatory networks
    • Palaniswamy, S.K. et al. AGRIS and AtRegNet. A platform to link cis-regulatory elements and transcription factors into regulatory networks. Plant Physiol. 140, 818-829 (2006).
    • (2006) Plant Physiol , vol.140 , pp. 818-829
    • Palaniswamy, S.K.1
  • 54
    • 0347492019 scopus 로고    scopus 로고
    • AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors
    • Davuluri, R.V. et al. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics 4, 25 (2003).
    • (2003) BMC Bioinformatics , vol.4 , pp. 25
    • Davuluri, R.V.1
  • 55
    • 73249145845 scopus 로고    scopus 로고
    • Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis
    • Mustroph, A. et al. Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis. Proc. Natl. Acad. Sci. USA 106, 18843-18848 (2009).
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 18843-18848
    • Mustroph, A.1
  • 56
    • 40349091686 scopus 로고    scopus 로고
    • An "electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets
    • Winter, D. et al. An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets. PLoS ONE 2, e718 (2007).
    • (2007) PLoS ONE , vol.2 , pp. e718
    • Winter, D.1
  • 57
    • 0001393755 scopus 로고
    • Generation and maintenance of concentration gradients between the mesophyll and bundle sheath in maize leaves
    • Stitt, M. & Heldt, H.W. Generation and maintenance of concentration gradients between the mesophyll and bundle sheath in maize leaves. Biochimica et Biophysica Acta (BBA). Bioenergetics 808, 400-414 (1985).
    • (1985) Biochimica et Biophysica Acta (BBA). Bioenergetics , vol.808 , pp. 400-414
    • Stitt, M.1    Heldt, H.W.2
  • 59
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: Complexity, diversity, and dynamics
    • Schnable, P.S. et al. The B73 maize genome: complexity, diversity, and dynamics. Science 326, 1112-1115 (2009).
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1
  • 60
    • 33746843948 scopus 로고    scopus 로고
    • Supercharging rice photosynthesis to increase yield
    • Mitchell, P.L. & Sheehy, J.E. Supercharging rice photosynthesis to increase yield. New Phytol. 171, 688-693 (2006).
    • (2006) New Phytol , vol.171 , pp. 688-693
    • Mitchell, P.L.1    Sheehy, J.E.2
  • 61
    • 84941599050 scopus 로고    scopus 로고
    • The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria
    • Mallmann, J. et al. The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria. Elife e02478 (2014).
    • (2014) Elife , pp. e02478
    • Mallmann, J.1
  • 62
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell, C., Pachter, L. & Salzberg, S.L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 63
    • 84872198346 scopus 로고    scopus 로고
    • Differential analysis of gene regulation at transcript resolution with RNA-seq
    • Trapnell, C. et al. Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat. Biotechnol. 31, 46-53 (2013).
    • (2013) Nat. Biotechnol , vol.31 , pp. 46-53
    • Trapnell, C.1
  • 64
    • 84875807067 scopus 로고    scopus 로고
    • BBH-LS: An algorithm for computing positional homologs using sequence and gene context similarity
    • Zhang, M. & Leong, H.W. BBH-LS: an algorithm for computing positional homologs using sequence and gene context similarity. BMC Syst. Biol. 6 (suppl. 1), S22 (2012).
    • (2012) BMC Syst. Biol , vol.6 , pp. S22
    • Zhang, M.1    Leong, H.W.2
  • 65
    • 18444402182 scopus 로고    scopus 로고
    • The Ensembl genome database project
    • Hubbard, T. et al. The Ensembl genome database project. Nucleic Acids Res. 30, 38-41 (2002).
    • (2002) Nucleic Acids Res , vol.30 , pp. 38-41
    • Hubbard, T.1
  • 66
    • 76749129703 scopus 로고    scopus 로고
    • MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement
    • Shi, G., Zhang, L. & Jiang, T. MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement. BMC Bioinformatics 11, 10 (2010).
    • (2010) BMC Bioinformatics , vol.11 , pp. 10
    • Shi, G.1    Zhang, L.2    Jiang, T.3
  • 67
    • 75549086594 scopus 로고    scopus 로고
    • InParanoid 7: New algorithms and tools for eukaryotic orthology analysis
    • Ostlund, G. et al. InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. Nucleic Acids Res. 38, D196-D203 (2010).
    • (2010) Nucleic Acids Res , vol.38 , pp. D196-D203
    • Ostlund, G.1
  • 68
    • 33644787447 scopus 로고    scopus 로고
    • OrthoMCL-DB: Querying a comprehensive multi-species collection of ortholog groups
    • Chen, F., Mackey, A.J., Stoeckert, C.J. Jr. & Roos, D.S. OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res. 34, D363-D368 (2006).
    • (2006) Nucleic Acids Res , vol.34 , pp. D363-D368
    • Chen, F.1    Mackey, A.J.2    Stoeckert, C.J.3    Roos, D.S.4
  • 69
    • 45549089420 scopus 로고    scopus 로고
    • High-throughput functional annotation and data mining with the Blast2GO suite
    • Götz, S. et al. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 36, 3420-3435 (2008).
    • (2008) Nucleic Acids Res , vol.36 , pp. 3420-3435
    • Götz, S.1
  • 71
    • 77954396635 scopus 로고    scopus 로고
    • Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function
    • Tohge, T. & Fernie, A.R. Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function. Nat. Protoc. 5, 1210-1227 (2010).
    • (2010) Nat. Protoc , vol.5 , pp. 1210-1227
    • Tohge, T.1    Fernie, A.R.2
  • 72
    • 62549159971 scopus 로고    scopus 로고
    • Web-based resources for mass-spectrometry-based metabolomics: A user's guide
    • Tohge, T. & Fernie, A.R. Web-based resources for mass-spectrometry-based metabolomics: A user's guide. Phytochemistry 70, 450-456 (2009).
    • (2009) Phytochemistry , vol.70 , pp. 450-456
    • Tohge, T.1    Fernie, A.R.2
  • 74
    • 0001554933 scopus 로고
    • New C-4?-hydroxy derivatives of maysin and 3'-methoxymaysin isolated from corn silks (Zea-mays)
    • Snook, M.E. et al. New C-4?-hydroxy derivatives of maysin and 3'-methoxymaysin isolated from corn silks (Zea-mays). J. Agric. Food Chem. 43, 2740-2745 (1995).
    • (1995) J. Agric. Food Chem , vol.43 , pp. 2740-2745
    • Snook, M.E.1
  • 75
    • 80455173508 scopus 로고    scopus 로고
    • Toward the storage metabolome: Profiling the barley vacuole
    • Tohge, T. et al. Toward the storage metabolome: profiling the barley vacuole. Plant Physiol. 157, 1469-1482 (2011).
    • (2011) Plant Physiol , vol.157 , pp. 1469-1482
    • Tohge, T.1
  • 76
    • 84861337100 scopus 로고    scopus 로고
    • Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis
    • Matsuda, F. et al. Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis. Plant J. 70, 624-636 (2012).
    • (2012) Plant J , vol.70 , pp. 624-636
    • Matsuda, F.1
  • 77
    • 14744280370 scopus 로고    scopus 로고
    • A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness
    • Gibon, Y. et al. A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16, 3304-3325 (2004).
    • (2004) Plant Cell , vol.16 , pp. 3304-3325
    • Gibon, Y.1
  • 78
    • 77957766623 scopus 로고    scopus 로고
    • Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions
    • Sulpice, R. et al. Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. Plant Cell 22, 2872-2893 (2010).
    • (2010) Plant Cell , vol.22 , pp. 2872-2893
    • Sulpice, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.