Diversity and N-acyl-homoserine lactone production by Gammaproteobacteria associated with Avicennia marina rhizosphere of South Indian mangroves

Systematic and Applied Microbiology

Volumn 38, Issue 5, 2015, Pages 340-345

  Viswanath, Ganga ^a   Jegan, Sekar ^a   Baskaran, Viswanathan ^a   Kathiravan, Raju ^a   Prabavathy, Vaiyapuri Ramalingam ^a  

^a M S SWAMINATHAN RESEARCH FOUNDATION   (India)

Author keywords

16S rRNA analysis; BOX PCR; Mangrove; N acyl homoserine lactone (AHL); Rhizobacteria; TLC

Indexed keywords

GENOMIC DNA; N ACYLHOMOSERINE LACTONE; RNA 16S; BACTERIAL DNA; GAMMA BUTYROLACTONE DERIVATIVE; RIBOSOME DNA;

AEROMONAS; AGROBACTERIUM TUMEFACIENS; AMPLICON; ARTICLE; AVICENNIA MARINA; BACTERIUM ISOLATION; BIOSENSOR; CHROMOBACTERIUM VIOLACEUM; CONTROLLED STUDY; DNA EXTRACTION; GAMMAPROTEOBACTERIA; GENOTYPE; HALOMONAS; MANGROVE; MICROBIAL DIVERSITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOBACTERIUM; PHYLOGENETIC TREE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA; RHIZOSPHERE; RNA SEQUENCE; SERRATIA; THIN LAYER CHROMATOGRAPHY; VIBRIO; VIBRIO FURNISSII; AVICENNIA; CHEMISTRY; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; INDIA; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; WETLAND;

AEROMONAS; AGROBACTERIUM TUMEFACIENS; AVICENNIA MARINA; BACTERIA (MICROORGANISMS); CHROMOBACTERIUM VIOLACEUM; GAMMAPROTEOBACTERIA; HALOMONAS; PHOTOBACTERIUM; PHOTOBACTERIUM HALOTOLERANS; PSEUDOMONAS; PSEUDOMONAS SP.; RHIZOBIALES; RHIZOPHORACEAE; SERRATIA; VIBRIO;

ACYL-BUTYROLACTONES; AVICENNIA; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; GAMMAPROTEOBACTERIA; INDIA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RHIZOSPHERE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; WETLANDS;

EID: 84983097428     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2015.03.008     Document Type: Article

References (39)

1. Atkinson S., Williams P. Quorum sensing and social networking in the microbial world. J. R. Soc. Interface 2009, 6:959-978.
2. Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., Struhl K. Current Protocols in Molecular Biology 1987, Greene Publishing Associates/Wiley Interscience, New York.
3. Bai S., Li J., He Z., Nostrand J., Tian Y., Lin G., Zhou J., Zheng T. GeoChip-based analysis of the functional gene diversity and metabolic potential of soil microbial communities of mangroves. Appl. Microbiol. Biotechnol. 2013, 97:7035-7048.
4. Bauer W.D., Mathesius U. Plant responses to bacterial quorum sensing signals. Curr. Opin. Plant Biol. 2004, 7:429-433.
5. Case R.J., Labbate M., Kjelleberg S. AHL-driven quorum-sensing circuits: their frequency and function among the Proteobacteria. ISME J. 2008, 2:345-349.
6. d'Angelo-Picard C., Faure D., Penot I., Dessaux Y. Diversity of N-acyl homoserine lactone-producing and -degrading bacteria in soil and tobacco rhizosphere. Environ. Microbiol. 2005, 7:1796-1808.
7. Diggle S.P., Crusz S.A., Camara M. Quorum sensing. Curr. Biol. 2007, 17:R907-R910.
8. Elasri M., Delorme S., Lemanceau P., Stewart G., Laue B., Glickmann E., Oger P.M., Dessaux Y. Acyl-homoserine lactone production is more common among plant-associated Pseudomonas spp. than among soil borne Pseudomonas spp. Appl. Environ. Microbiol. 2001, 67:1198-1209.
9. Farrand S.K., Qin Y., Oger P. Quorum-sensing system of Agrobacterium plasmids: analysis and utility. Methods Enzymol. 2002, 358:452-484.
10. Galloway W.R., Hodgkinson J.T., Bowden S.D., Welch M., Spring D.R. Quorum sensing in Gram-negative bacteria: small-molecule modulation of AHL and AI-2 quorum sensing pathways. Chem. Rev. 2011, 111:28-67.
11. Golberg K., Eltzov E., Shnit-Orland M., Marks R.S., Kushmaro A. Characterization of quorum sensing signals in coral-associated bacteria. Microb. Ecol. 2011, 61:783-792.
12. Gomes N.C.M., Cleary D.F.R., Calado R., Costa R. Mangrove bacterial richness. Commun. Integr. Biol. 2011, 4:419-423.
13. Gomes N.C.M., Cleary D.F.R., Pinto F.N., Egas C., Almeida A., Cunha A., Mendonca-Hagler L.C.S., Smalla K. Taking root: enduring effect of rhizosphere bacterial colonization in mangroves. PLoS ONE 2010, 5:e14065.
14. Gonzalez J.E., Keshavan N.D. Messing with bacterial quorum sensing. Microbiol. Mol. Biol. Rev. 2006, 70:859-875.
15. Gould W.D., Hagedorn C., Bardinelli T.R., Zablotowicz R.M. New selective media for enumeration and recovery of fluorescent pseudomonads from various habitats. Appl. Environ. Microbiol. 1985, 49:28-32.
16. Gould T.A., Herman J., Krank J., Murphy R.C., Churchill M.E. Specificity of acyl-homoserine lactone synthases examined by mass spectrometry. J. Bacteriol. 2006, 188:773-783.
17. Gray K.M., Garey J.R. The evolution of bacterial LuxI and LuxR quorum sensing regulators. Microbiology 2001, 147:2379-2387.
18. Hao Y.A., Stephen C.W., Bernard R.G., Trevor C.C. Identification and characterization of new LuxR/LuxI-type quorum sensing systems from metagenomic libraries. Environ. Microbiol. 2010, 12:105-117.
19. Hartmann A., Rothballer M., Hense B., Schroeder P. Bacterial quorum sensing compounds are important modulators of microbe-plant interactions. Front. Microbiol. 2014, 5:131.
20. Holguin G., Vazquez P., Bashan Y. The role of sediment microorganisms in the productivity, conservation and rehabilitation of mangrove ecosystems: an overview. Biol. Fertil. Soils 2001, 33:265-278.
21. Huang Y., Ki J.S., Case R.J., Qian P.Y. Diversity and acyl-homoserine lactone production among subtidal biofilm-forming bacteria. Aquat. Microb. Ecol. 2008, 52:185-193.
22. Kim O.S., Cho Y.J., Lee K., Yoon S.H., Kim M., Na H. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylo-types that represent uncultured species. Int. J. Syst. Evol. Microbiol. 2012, 62:716-721.
23. Lane D.J., Pace B., Olsen G.J., Stahl D.A., Sogin M.L., Pace N.R. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc. Natl. Acad. Sci. U. S. A. 1985, 82:6955-6959.
24. Lerat E., Moran N.E. The evolutionary history of quorum sensing systems in bacteria. Mol. Biol. Evol. 2004, 21:903-913.
25. Louws F.J., Fulbright D.W., Stephens C.T., de Bruijn F.J. Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequences and PCR. Appl. Environ. Microbiol. 1994, 60:2286-2295.
26. Lupp C., Ruby E.G. Vibrio fischeri LuxS and AinS: comparative study of two signal synthases. J. Bacteriol. 2004, 186:3873-3881.
27. McClean K.H., Winson M.K., Fish L., Taylor A., Chhabra S.R., Camara M., Daykin M., Lamb J.H., Swift S., Bycroft B.W., Stewart G.S., Williams P. Quorum sensing in Chromobacterium violaceum: exploitation of violacein production and inhibition for the detection of N-acylhomoserine lactones. Microbiology 1997, 143:3703-3711.
28. Mohamed N.M., Cicirelli E.M., Kan J., Chen F., Fuqua C., Hill R.T. Diversity and quorum-sensing signal production of Proteobacteria associated with marine sponges. Environ. Microbiol. 2008, 10:75-86.
29. Pérez-Montaño F., Jiménez-Guerrero I., Sánchez-Matamoros R.C., López-Baena F.J., Ollero F.J., Rodríguez-Carvajal M.A., Bellogín R.A., Espuny M.R. Rice and bean AHL-mimic quorum-sensing signals specifically interfere with the capacity to form biofilms by plant-associated bacteria. Res. Microbiol. 2013, 164:749-760.
30. Rameshkumar N., Nair S. Isolation and molecular characterization of genetically diverse antagonistic, diazotrophic red pigmented vibrios from different mangrove rhizospheres. FEMS Microbiol. Ecol. 2009, 67:455-467.
31. Rohlf F.J. NTSYS-pc. Numerical taxonomy and multivariate analysis system, version 2.10. Exeter Software, New York 2002.
32. Ryu E. A simple method of differentiation between Gram-positive and Gram-negative organisms without staining. Kitasato Arch. Exp. Med. 1940, 17:58-63.
33. Sahoo K., Dhal N.K. Potential microbial diversity in mangrove ecosystems: a review. Indian J. Mar. Sci. 2009, 38:249-256.
34. Shaw P.D., Ping G., Daly S.L., Cha C., Cronan J.E., Rinehart K.L., Farrand S.K. Detecting and characterizing N-acyl-homoserine lactone signal molecules by thin-layer chromatography. Proc. Natl. Acad. Sci. U. S. A. 1997, 94:6036-6041.
35. Steindler L., Venturi V. Detection of quorum-sensing N-acyl homoserine lactone signal molecules by bacterial biosensors. FEMS Microbiol. Lett. 2007, 266:1-9.
36. Tait K., Havenhand J. Investigating a possible role for the bacterial signal molecules N-acyl homoserine lactones in Balanus improvisus cyprid settlement. Mol. Ecol. 2013, 22:2588-2602.
37. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
38. Williams P., Winzer K., Chan W., Camara M. Look who's talking: communication and quorum sensing in the bacterial world. Philos. Trans. R. Soc. Lond. B: Biol. Sci. 2007, 362:1119-1134.
39. Zeng Y., Yu Z., Huang Y. Combination of culture-dependent and -independent methods reveals diverse acyl homoserine lactone-producers from rhizosphere of wetland plants. Curr. Microbiol. 2014, 68:587-593.