-
1
-
-
77649247954
-
Visualization of macromolecular structures
-
O'Donoghue, S.I., Goodsell, D.S., Frangakis, A.S., Jossinet, F., Laskowski, R.A., Nilges, M., Saibil, H.R., Schafferhans, A., Wade, R.C., Westhof, E. et al. (2010) Visualization of macromolecular structures. Nat. Methods, 7, S42-S55.
-
(2010)
Nat. Methods
, vol.7
, pp. S42-S55
-
-
O'Donoghue, S.I.1
Goodsell, D.S.2
Frangakis, A.S.3
Jossinet, F.4
Laskowski, R.A.5
Nilges, M.6
Saibil, H.R.7
Schafferhans, A.8
Wade, R.C.9
Westhof, E.10
-
2
-
-
78049425658
-
An introduction to biomolecular graphics
-
Mura, C., McCrimmon, C.M., Vertrees, J. and Sawaya, M.R. (2010) An introduction to biomolecular graphics. PLoS Comput. Biol., 6, e1000918.
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. e1000918
-
-
Mura, C.1
McCrimmon, C.M.2
Vertrees, J.3
Sawaya, M.R.4
-
3
-
-
77954257799
-
Con surf 2010: Calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
-
Ashkenazy, H., Erez, E., Martz, E., Pupko, T. and Ben-Tal, N. (2010) Con Surf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res., 38, 529-533.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 529-533
-
-
Ashkenazy, H.1
Erez, E.2
Martz, E.3
Pupko, T.4
Ben-Tal, N.5
-
4
-
-
84876554926
-
Voronoia4RNA-A database of atomic packing densities of RNA structures and their complexes
-
Ismer, J., Rose, A.S., Tiemann, J.K.S., Goede, A., Rother, K. and Hildebrand, P.W. (2013) Voronoia4RNA-a database of atomic packing densities of RNA structures and their complexes. Nucleic Acids Res., 41, D280-D284.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D280-D284
-
-
Ismer, J.1
Rose, A.S.2
Tiemann, J.K.S.3
Goede, A.4
Rother, K.5
Hildebrand, P.W.6
-
5
-
-
84891774970
-
PDBe: Protein data bank in Europe
-
Gutmanas, A., Alhroub, Y., Battle, G.M., Berrisford, J.M., Bochet, E., Conroy, M.J., Dana, J.M., Fernandez Montecelo, M.A., Van Ginkel, G., Gore, S.P. et al. (2014) PDBe: protein data bank in Europe. Nucleic Acids Res., 42, 285-291.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 285-291
-
-
Gutmanas, A.1
Alhroub, Y.2
Battle, G.M.3
Berrisford, J.M.4
Bochet, E.5
Conroy, M.J.6
Dana, J.M.7
Fernandez Montecelo, M.A.8
Van Ginkel, G.9
Gore, S.P.10
-
6
-
-
84891767610
-
MP:PD-A data base of internal packing densities, internal packing defects and internal waters of helical membrane proteins
-
Rose, A.S., Theune, D., Goede, A. and Hildebrand, P.W. (2014) MP:PD-a data base of internal packing densities, internal packing defects and internal waters of helical membrane proteins. Nucleic Acids Res., 42, D347-D351.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D347-D351
-
-
Rose, A.S.1
Theune, D.2
Goede, A.3
Hildebrand, P.W.4
-
7
-
-
84946045336
-
The RCSB protein data bank: New resources for research and education
-
Rose, P.W., Bi, C., Bluhm, W.F., Christie, C.H., Dimitropoulos, D., Dutta, S., Green, R.K., Goodsell, D.S., Prlic, A., Quesada, M. et al. (2015) The RCSB Protein Data Bank: new resources for research and education. Nucleic Acids Res., 43, D345-D356.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D345-D356
-
-
Rose, P.W.1
Bi, C.2
Bluhm, W.F.3
Christie, C.H.4
Dimitropoulos, D.5
Dutta, S.6
Green, R.K.7
Goodsell, D.S.8
Prlic, A.9
Quesada, M.10
-
8
-
-
77957352833
-
Jmol-A paradigm shift in crystallographic visualization
-
Hanson, R.M. (2010) Jmol-a paradigm shift in crystallographic visualization. J. Appl. Crystallogr., 43, 1250-1260.
-
(2010)
J. Appl. Crystallogr.
, vol.43
, pp. 1250-1260
-
-
Hanson, R.M.1
-
9
-
-
0038820376
-
Astex viewer: A visualisation aid for structure-based drug design
-
Hartshorn, M.J. (2002) Astex Viewer: a visualisation aid for structure-based drug design. J. Comput. Aided Mol. Des., 16, 871-881.
-
(2002)
J. Comput. Aided Mol. Des.
, vol.16
, pp. 871-881
-
-
Hartshorn, M.J.1
-
10
-
-
84876239078
-
JSmol and the next-generation web-based representation of 3D molecular structure as applied to Proteopedia
-
Hanson, R.M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J.L. (2013) JSmol and the next-generation web-based representation of 3D molecular structure as applied to Proteopedia. Isr. J. Chem., 53, 207-216.
-
(2013)
Isr. J. Chem.
, vol.53
, pp. 207-216
-
-
Hanson, R.M.1
Prilusky, J.2
Renjian, Z.3
Nakane, T.4
Sussman, J.L.5
-
11
-
-
79952464773
-
GPU-powered tools boost molecular visualization
-
Chavent, M., Lévy, B., Krone, M., Bidmon, K., Nominé, J.-P., Ertl, T. and Baaden, M. (2011) GPU-powered tools boost molecular visualization. Brief. Bioinform., 12, 689-701.
-
(2011)
Brief. Bioinform.
, vol.12
, pp. 689-701
-
-
Chavent, M.1
Lévy, B.2
Krone, M.3
Bidmon, K.4
Nominé, J.-P.5
Ertl, T.6
Baaden, M.7
-
12
-
-
84984675751
-
SWISS-MODEL: Modelling protein tertiary and quaternary structure using evolutionary information
-
Biasini, M., Bienert, S., Waterhouse, A., Arnold, K., Studer, G., Schmidt, T., Kiefer, F., Cassarino, T.G., Bertoni, M., Bordoli, L. et al. (2014) SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Res., 8, 1-7.
-
(2014)
Nucleic Acids Res.
, vol.8
, pp. 1-7
-
-
Biasini, M.1
Bienert, S.2
Waterhouse, A.3
Arnold, K.4
Studer, G.5
Schmidt, T.6
Kiefer, F.7
Cassarino, T.G.8
Bertoni, M.9
Bordoli, L.10
-
13
-
-
84927720583
-
3Dmol.js: Molecular visualization with Web GL
-
Rego, N. and Koes, D. (2014) 3Dmol.js: molecular visualization with Web GL. Bioinformatics, 8, 1322-1324.
-
(2014)
Bioinformatics
, vol.8
, pp. 1322-1324
-
-
Rego, N.1
Koes, D.2
-
14
-
-
84894632844
-
Iview: An interactive Web GL visualizer for protein-ligand complex
-
Li, H., Leung, K.-S., Nakane, T. and Wong, M.-H. (2014) iview: an interactive Web GL visualizer for protein-ligand complex. BMC Bioinformatics, 15, 56.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 56
-
-
Li, H.1
Leung, K.-S.2
Nakane, T.3
Wong, M.-H.4
-
15
-
-
34547713522
-
GPU-based ray-casting of quadratic surfaces
-
Botsch, M, Chen, B, Pauly, M and Zwicker, M (eds). The Eurographics Association, Aire-la-Ville
-
Sigg, C., Weyrich, T., Botsch, M. and Gross, M. (2006) GPU-based ray-casting of quadratic surfaces. In: Botsch, M, Chen, B, Pauly, M and Zwicker, M (eds). Symp. Point-Based Graph. The Eurographics Association, Aire-la-Ville, pp. 59-65.
-
(2006)
Symp. Point-Based Graph
, pp. 59-65
-
-
Sigg, C.1
Weyrich, T.2
Botsch, M.3
Gross, M.4
-
16
-
-
33845621535
-
Ambient occlusion and edge cueing to enhance real time molecular visualization
-
Tarini, M., Cignoni, P. and Montani, C. (2006) Ambient occlusion and edge cueing to enhance real time molecular visualization. IEEE Trans. Vis. Comput. Graph., 12, 1237-1244.
-
(2006)
IEEE Trans. Vis. Comput. Graph.
, vol.12
, pp. 1237-1244
-
-
Tarini, M.1
Cignoni, P.2
Montani, C.3
-
17
-
-
79960641099
-
GPU-accelerated atom and dynamic bond visualization using hyperballs: A unified algorithm for balls, sticks, and hyperboloids
-
Chavent, M., Vanel, A., Tek, A., Levy, B., Robert, S., Raffin, B. and Baaden, M. (2011) GPU-accelerated atom and dynamic bond visualization using hyperballs: a unified algorithm for balls, sticks, and hyperboloids. J. Comput. Chem., 32, 2924-2935.
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 2924-2935
-
-
Chavent, M.1
Vanel, A.2
Tek, A.3
Levy, B.4
Robert, S.5
Raffin, B.6
Baaden, M.7
-
18
-
-
84865071760
-
Bendix: Intuitive helix geometry analysis and abstraction
-
Dahl, A.C.E., Chavent, M. and Sansom, M.S.P. (2012) Bendix: intuitive helix geometry analysis and abstraction. Bioinformatics, 28, 2193-2194.
-
(2012)
Bioinformatics
, vol.28
, pp. 2193-2194
-
-
Dahl, A.C.E.1
Chavent, M.2
Sansom, M.S.P.3
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