메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages

Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida

Author keywords

Effector; Genome; Plant parasitic nematode; Transcriptome

Indexed keywords

CARBOHYDRATE BINDING PROTEIN; CELLULASE; GLYCOSIDASE; PATULIN; PECTATE LYASE; HELMINTH PROTEIN;

EID: 84979854206     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-923     Document Type: Article
Times cited : (53)

References (73)
  • 3
    • 0001549960 scopus 로고
    • Distribution of species of potato cyst nematodes in South America
    • Evans K, Franco J, Descurrah MM: Distribution of species of potato cyst nematodes in South America. Nematologica 1975, 21:365-369.
    • (1975) Nematologica , vol.21 , pp. 365-369
    • Evans, K.1    Franco, J.2    Descurrah, M.M.3
  • 5
    • 79960546467 scopus 로고    scopus 로고
    • Horizontal gene transfer in nematodes: a catalyst for plant parasitism?
    • Haegeman A, Jones JT, Danchin E: Horizontal gene transfer in nematodes: a catalyst for plant parasitism? Mol Plant-Microbe Interact 2011, 24:879-887.
    • (2011) Mol Plant-Microbe Interact , vol.24 , pp. 879-887
    • Haegeman, A.1    Jones, J.T.2    Danchin, E.3
  • 7
    • 51249172883 scopus 로고
    • Ultrastructure of esophogeal glands and their secretory granuls in the root-knot nematode Meloidogyne incognita
    • Hussey RS, Mimms CW: Ultrastructure of esophogeal glands and their secretory granuls in the root-knot nematode Meloidogyne incognita. Protoplasma 1990, 162:99-107.
    • (1990) Protoplasma , vol.162 , pp. 99-107
    • Hussey, R.S.1    Mimms, C.W.2
  • 11
    • 84870976776 scopus 로고    scopus 로고
    • Isolation of whole esophageal gland cells from plant-parasitic nematodes for transcriptome analyses and effector identification
    • Maier TR, Hewezi T, Peng JQ, Baum TJ: Isolation of whole esophageal gland cells from plant-parasitic nematodes for transcriptome analyses and effector identification. Mol Plant-Microbe Interact 2013, 26:31-35.
    • (2013) Mol Plant-Microbe Interact , vol.26 , pp. 31-35
    • Maier, T.R.1    Hewezi, T.2    Peng, J.Q.3    Baum, T.J.4
  • 12
    • 0032341053 scopus 로고    scopus 로고
    • In-situ hybridization to messenger RNA in Heterodera glycines
    • De Boer JM, Yan Y, Smant G, Davis EL, Baum TJ: In-situ hybridization to messenger RNA in Heterodera glycines. J Nematol 1998, 30:309-312.
    • (1998) J Nematol , vol.30 , pp. 309-312
    • De Boer, J.M.1    Yan, Y.2    Smant, G.3    Davis, E.L.4    Baum, T.J.5
  • 14
    • 33751100626 scopus 로고    scopus 로고
    • The plant immune system
    • Jones JDG, Dangl JL: The plant immune system. Nature 2006, 444:323-329.
    • (2006) Nature , vol.444 , pp. 323-329
    • Jones, J.D.G.1    Dangl, J.L.2
  • 17
    • 79551705019 scopus 로고    scopus 로고
    • The novel cyst nematode effector protein 19C07 interacts with the Arabidoipsis auxin influx transporter LAX3 to control feeding site development
    • Lee C, Chronis D, Kenning C, Peret B, Hewezi T, Davis EL, Baum TJ, Hussey RS, Bennet M, Mitchum MG: The novel cyst nematode effector protein 19C07 interacts with the Arabidoipsis auxin influx transporter LAX3 to control feeding site development. Plant Physiol 2011, 155:866-880.
    • (2011) Plant Physiol , vol.155 , pp. 866-880
    • Lee, C.1    Chronis, D.2    Kenning, C.3    Peret, B.4    Hewezi, T.5    Davis, E.L.6    Baum, T.J.7    Hussey, R.S.8    Bennet, M.9    Mitchum, M.G.10
  • 18
    • 17644392143 scopus 로고    scopus 로고
    • A parasitism gene from a plant-parasitic nematode with function similar to CLAVATA3/ESR (CLE) of Arabidopsis thaliana
    • Wang X, Mitchum MG, Gao B, Li C, Diab H, Baum TJ, Hussey RS, Davis EL: A parasitism gene from a plant-parasitic nematode with function similar to CLAVATA3/ESR (CLE) of Arabidopsis thaliana. Mol Plant Pathol 2005, 6:187-191.
    • (2005) Mol Plant Pathol , vol.6 , pp. 187-191
    • Wang, X.1    Mitchum, M.G.2    Gao, B.3    Li, C.4    Diab, H.5    Baum, T.J.6    Hussey, R.S.7    Davis, E.L.8
  • 19
    • 58549085207 scopus 로고    scopus 로고
    • Cellulose binding protein from the parasitic nematode Heterodera schachtii interacts with Arabidopsis pectin methylesterase: cooperative cell wall modification during parasitism
    • Hewezi T, Howe P, Maier T, Hussey RS, Goellner-Mitchum M, Davis EL, Baum TJ: Cellulose binding protein from the parasitic nematode Heterodera schachtii interacts with Arabidopsis pectin methylesterase: cooperative cell wall modification during parasitism. Plant Cell 2008, 20:3080-3093.
    • (2008) Plant Cell , vol.20 , pp. 3080-3093
    • Hewezi, T.1    Howe, P.2    Maier, T.3    Hussey, R.S.4    Goellner-Mitchum, M.5    Davis, E.L.6    Baum, T.J.7
  • 20
    • 75949102014 scopus 로고    scopus 로고
    • Arabidopsis spermidine synthase is targeted by an effector protein of the cyst nematode Heterodera schachtii
    • Hewezi T, Howe P, Maier T, Hussey RS, Goellner-Mitchum M, Davis EL, Baum TJ: Arabidopsis spermidine synthase is targeted by an effector protein of the cyst nematode Heterodera schachtii. Plant Physiol 2010, 152:968-984.
    • (2010) Plant Physiol , vol.152 , pp. 968-984
    • Hewezi, T.1    Howe, P.2    Maier, T.3    Hussey, R.S.4    Goellner-Mitchum, M.5    Davis, E.L.6    Baum, T.J.7
  • 23
    • 55449130189 scopus 로고    scopus 로고
    • Direct identification of the Meloidogyne incognita secretome reveals proteins with host cell reprogramming potential
    • Bellafiore S, Shen Z, Rosso M-N, Abad P, Shih P, Briggs SP: Direct identification of the Meloidogyne incognita secretome reveals proteins with host cell reprogramming potential. PLoS Pathog 2008, 4(10):e1000192.
    • (2008) PLoS Pathog , vol.4 , Issue.10
    • Bellafiore, S.1    Shen, Z.2    Rosso, M-N.3    Abad, P.4    Shih, P.5    Briggs, S.P.6
  • 26
    • 84879268708 scopus 로고    scopus 로고
    • Secretome analysis of the pine wood nematode Bursaphelenchus xylophilus reveals the tangled roots of parasitism and its potential for molecular mimicry
    • Shinya R, Morisaka H, Kikuchi T, Takeuchi Y, Ueda M, Futai K: Secretome analysis of the pine wood nematode Bursaphelenchus xylophilus reveals the tangled roots of parasitism and its potential for molecular mimicry. PLoS ONE 2013, 8(6):e67377.
    • (2013) PLoS ONE , vol.8 , Issue.6
    • Shinya, R.1    Morisaka, H.2    Kikuchi, T.3    Takeuchi, Y.4    Ueda, M.5    Futai, K.6
  • 29
    • 78651268231 scopus 로고    scopus 로고
    • Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover
    • Meyer WE, Schuster LN, Bartelmes G, Dieterich C, Sommer RJ: Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover. BMC Evolutionary Biol 2011, 11:13.
    • (2011) BMC Evolutionary Biol , vol.11 , pp. 13
    • Meyer, W.E.1    Schuster, L.N.2    Bartelmes, G.3    Dieterich, C.4    Sommer, R.J.5
  • 30
    • 0034753922 scopus 로고    scopus 로고
    • Endo-ß-1,4-glucanase expression in compatible plant-nematode interactions
    • Goellner M, Wang X, Davis EL: Endo-ß-1,4-glucanase expression in compatible plant-nematode interactions. Plant Cell 2001, 13:2241-2255.
    • (2001) Plant Cell , vol.13 , pp. 2241-2255
    • Goellner, M.1    Wang, X.2    Davis, E.L.3
  • 32
    • 34447644749 scopus 로고    scopus 로고
    • Active uptake of cyst nematode parasitism proteins into the plant cell nucleus
    • Elling AA, Davis EL, Hussey RS, Baum TJ: Active uptake of cyst nematode parasitism proteins into the plant cell nucleus. Int J Parasitol 2007, 37:1269-1279.
    • (2007) Int J Parasitol , vol.37 , pp. 1269-1279
    • Elling, A.A.1    Davis, E.L.2    Hussey, R.S.3    Baum, T.J.4
  • 34
    • 84870991769 scopus 로고    scopus 로고
    • A novel effector protein, MJNULG1a, targeted to giant cell nuclei plays a role in Meloidogyne javanica parasitism
    • Lin B, Zhuo K, Wu P, Cui R, Zhang L-H, Liao J: A novel effector protein, MJNULG1a, targeted to giant cell nuclei plays a role in Meloidogyne javanica parasitism. Mol Plant-Microbe Interact 2013, 26:55-66.
    • (2013) Mol Plant-Microbe Interact , vol.26 , pp. 55-66
    • Lin, B.1    Zhuo, K.2    Wu, P.3    Cui, R.4    Zhang, L-H.5    Liao, J.6
  • 36
    • 84884187971 scopus 로고    scopus 로고
    • Plant parasitic nematode effectors target host defense and nuclear functions to establish feeding cells
    • Quentin M, Abad P, Favery B: Plant parasitic nematode effectors target host defense and nuclear functions to establish feeding cells. Front Plant Sci 2013, 4. doi:10.3389/fpls.2013.00053.
    • (2013) Front Plant Sci , pp. 4
    • Quentin, M.1    Abad, P.2    Favery, B.3
  • 37
    • 84876344035 scopus 로고    scopus 로고
    • Mutational analysis of a predicted double ß-propeller domain of the DspA/E effector of Erwinia amylovora
    • Siamer S, Gaubert S, Boureau T, Brisset M-N, Barny MA: Mutational analysis of a predicted double ß-propeller domain of the DspA/E effector of Erwinia amylovora. FEMS Microbiol Lett 2013, 342:54-61.
    • (2013) FEMS Microbiol Lett , vol.342 , pp. 54-61
    • Siamer, S.1    Gaubert, S.2    Boureau, T.3    Brisset, M-N.4    Barny, M.A.5
  • 40
    • 84864630234 scopus 로고    scopus 로고
    • Plant catalases: peroxisomal redox guardians
    • Mhamdi A, Noctor G, Baker A: Plant catalases: peroxisomal redox guardians. Arch Biochem Biophys 2012, 525:181-194.
    • (2012) Arch Biochem Biophys , vol.525 , pp. 181-194
    • Mhamdi, A.1    Noctor, G.2    Baker, A.3
  • 41
    • 0033490812 scopus 로고    scopus 로고
    • Localization of hydrogen peroxide during the defence response of Arabidopsis thaliana against the plant parasitic nematode Heterodera glycines
    • Waetzig GH, Sobczak M, Grundler FMW: Localization of hydrogen peroxide during the defence response of Arabidopsis thaliana against the plant parasitic nematode Heterodera glycines. Nematology 1999, 1:681-686.
    • (1999) Nematology , vol.1 , pp. 681-686
    • Waetzig, G.H.1    Sobczak, M.2    Grundler, F.M.W.3
  • 42
    • 84876230401 scopus 로고    scopus 로고
    • Peroxisome membrane proteins: multiple trafficking routes and multiple functions?
    • Theodoulou FL, Berhardt K, Linka N, Baker A: Peroxisome membrane proteins: multiple trafficking routes and multiple functions? Biochem J 2013, 451:345-352.
    • (2013) Biochem J , vol.451 , pp. 345-352
    • Theodoulou, F.L.1    Berhardt, K.2    Linka, N.3    Baker, A.4
  • 44
    • 78149494002 scopus 로고    scopus 로고
    • Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans
    • Raffaele S, Win J, Cano LM, Kamoun S: Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans. BMC Genomics 2010, 11:637.
    • (2010) BMC Genomics , vol.11 , pp. 637
    • Raffaele, S.1    Win, J.2    Cano, L.M.3    Kamoun, S.4
  • 45
    • 84901625138 scopus 로고    scopus 로고
    • Two dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and othe eukaryotes.
    • in press.
    • Saunders DGO, Win J, Kamoun S, Raffaele S: Two dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and othe eukaryotes. Meth Mol Biol 2014. in press.
    • (2014) Meth Mol Biol
    • Saunders, D.G.O.1    Win, J.2    Kamoun, S.3    Raffaele, S.4
  • 46
    • 84888396486 scopus 로고    scopus 로고
    • Alternative splicing at the intersection of biological timing, development and stress responses
    • Staiger D, Brown JWS: Alternative splicing at the intersection of biological timing, development and stress responses. Plant Cell 2013, 25:3640-3656.
    • (2013) Plant Cell , vol.25 , pp. 3640-3656
    • Staiger, D.1    Brown, J.W.S.2
  • 47
    • 52049104487 scopus 로고    scopus 로고
    • Alternative splicing: a novel mechanism of regulation identified in the chorismate mutase gene of the potato cyst nematode Globodera rostochiensis
    • Lu SW, Tian DH, Borchardt-Wier HB, Wang XH: Alternative splicing: a novel mechanism of regulation identified in the chorismate mutase gene of the potato cyst nematode Globodera rostochiensis. Mol Biochem Parasitol 2008, 162:1-15.
    • (2008) Mol Biochem Parasitol , vol.162 , pp. 1-15
    • Lu, S.W.1    Tian, D.H.2    Borchardt-Wier, H.B.3    Wang, X.H.4
  • 48
    • 84859158652 scopus 로고    scopus 로고
    • Strategies for transgenic nematode control in developed and developing world crops
    • Atkinson HJ, Lilley CJ, Urwin PE: Strategies for transgenic nematode control in developed and developing world crops. Curr Opin Biotech 2012, 23:251-256.
    • (2012) Curr Opin Biotech , vol.23 , pp. 251-256
    • Atkinson, H.J.1    Lilley, C.J.2    Urwin, P.E.3
  • 49
    • 33749239238 scopus 로고    scopus 로고
    • Engineering broad rootknot resistance in transgenic plants by RNAi silencing of a conserved and essential root-knot nematode parasitism gene
    • Huang G, Allen R, Davis EL, Baum TJ, Hussey RS: Engineering broad rootknot resistance in transgenic plants by RNAi silencing of a conserved and essential root-knot nematode parasitism gene. Proc Natl Acad Sci U S A 2006, 103:14302-14306.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 14302-14306
    • Huang, G.1    Allen, R.2    Davis, E.L.3    Baum, T.J.4    Hussey, R.S.5
  • 50
    • 0031664527 scopus 로고    scopus 로고
    • Variation of virulence, in terms of quantitative reproduction of Globodera pallida populations, from Europe and South America, in relation to resistance from Solanum vernei and
    • Phillips MS, Trudgill DL: Variation of virulence, in terms of quantitative reproduction of Globodera pallida populations, from Europe and South America, in relation to resistance from Solanum vernei and S. tuberosum ssp andigena CPC 2802. Nematologica 1998, 44:409-423.
    • (1998) tuberosum ssp andigena CPC 2802. Nematologica , vol.44 , pp. 409-423
    • Phillips, M.S.1    Trudgill, D.L.2
  • 52
    • 33644857839 scopus 로고    scopus 로고
    • GenomeDiagram: a python package for the visualization of large-scale genomic data
    • Pritchard L, White JA, Birch PRJ, Toth IK: GenomeDiagram: a python package for the visualization of large-scale genomic data. Bioinformatics 2006, 22:616-617.
    • (2006) Bioinformatics , vol.22 , pp. 616-617
    • Pritchard, L.1    White, J.A.2    Birch, P.R.J.3    Toth, I.K.4
  • 56
    • 0036312019 scopus 로고    scopus 로고
    • The use of DNA microarrays for the developmental expression analysis of cDNAs from the oesophageal gland cell region of Heterodera glycines
    • De Boer JM, Mcdermott JP, Wang X, Maier T, Qui F, Hussey RS, Davis EL, Baum TJ: The use of DNA microarrays for the developmental expression analysis of cDNAs from the oesophageal gland cell region of Heterodera glycines. Mol Plant Pathol 2002, 3:261-270.
    • (2002) Mol Plant Pathol , vol.3 , pp. 261-270
    • De Boer, J.M.1    Mcdermott, J.P.2    Wang, X.3    Maier, T.4    Qui, F.5    Hussey, R.S.6    Davis, E.L.7    Baum, T.J.8
  • 58
    • 0037406616 scopus 로고    scopus 로고
    • A profile of putative parasitism genes expressed in the esophageal gland cells of the root-knot nematode Meloidogyne incognita
    • Huang GZ, Gao BL, Maier T, Allen R, Davis EL, Baum TJ, Hussey RS: A profile of putative parasitism genes expressed in the esophageal gland cells of the root-knot nematode Meloidogyne incognita. Mol Plant-Microbe Interact 2003, 16:376-381.
    • (2003) Mol Plant-Microbe Interact , vol.16 , pp. 376-381
    • Huang, G.Z.1    Gao, B.L.2    Maier, T.3    Allen, R.4    Davis, E.L.5    Baum, T.J.6    Hussey, R.S.7
  • 59
    • 34848908988 scopus 로고    scopus 로고
    • Sequence polymorphism of 2 pioneer genes expressed in phytoparasitic nematodes showing different host ranges
    • Blanchard A, Fouville D, Esquibet M, Mugniery D, Grenier E: Sequence polymorphism of 2 pioneer genes expressed in phytoparasitic nematodes showing different host ranges. J Heredity 2007, 98:611-619.
    • (2007) J Heredity , vol.98 , pp. 611-619
    • Blanchard, A.1    Fouville, D.2    Esquibet, M.3    Mugniery, D.4    Grenier, E.5
  • 62
    • 78149297086 scopus 로고    scopus 로고
    • CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database
    • Park BH, Karpinets TV, Syed MH, Leuze MR, Uberbacher EC: CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database. Glycobiology 2010, 20:1574-1584.
    • (2010) Glycobiology , vol.20 , pp. 1574-1584
    • Park, B.H.1    Karpinets, T.V.2    Syed, M.H.3    Leuze, M.R.4    Uberbacher, E.C.5
  • 66
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden markov model: application to complete genomes
    • Krogh A, Larsson B, von Heijne G, Sonnhammer ELL: Predicting transmembrane protein topology with a hidden markov model: application to complete genomes. J Mol Biol 2001, 305:567-580.
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.L.4
  • 67
    • 84885126545 scopus 로고    scopus 로고
    • Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology
    • Cock PJA, Grüning BA, Paszkiewicz KH, Pritchard L: Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology. PeerJ 2013, 1:e167.
    • (2013) PeerJ , vol.1
    • Cock, P.J.A.1    Grüning, B.A.2    Paszkiewicz, K.H.3    Pritchard, L.4
  • 68
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W: Differential expression analysis for sequence count data. Genome Biol 2010, 11(10):106.
    • (2010) Genome Biol , vol.11 , Issue.10 , pp. 106
    • Anders, S.1    Huber, W.2
  • 69
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: interactive sequence similarity searching
    • Finn RD, Clements J, Eddy SR: HMMER web server: interactive sequence similarity searching. Nuc Acids Res 2011, 39:W29-W37.
    • (2011) Nuc Acids Res , vol.39 , pp. W29-W37
    • Finn, R.D.1    Clements, J.2    Eddy, S.R.3
  • 70
    • 0036581417 scopus 로고    scopus 로고
    • Gateway vectors for Agrobacterium-mediated plant transformation
    • Karimi M, Inze D, Depicker A: Gateway vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci 2002, 7:193-195.
    • (2002) Trends Plant Sci , vol.7 , pp. 193-195
    • Karimi, M.1    Inze, D.2    Depicker, A.3
  • 71
    • 0033815073 scopus 로고    scopus 로고
    • The ternary transformation system: constitutive virG on a compatible plasmid dramatically increases Agrobacterium-mediated plant transformation
    • van der Fits L, Deakin EA, Hoge JHC, Memelink J: The ternary transformation system: constitutive virG on a compatible plasmid dramatically increases Agrobacterium-mediated plant transformation. Plant Mol Biol 2000, 43:495-502.
    • (2000) Plant Mol Biol , vol.43 , pp. 495-502
    • van der Fits, L.1    Deakin, E.A.2    Hoge, J.H.C.3    Memelink, J.4
  • 72
    • 67649506500 scopus 로고    scopus 로고
    • Transient expression in Nicotiana benthamiana fluorescent marker lines provides enhanced definition of protein localization, movement and interactions in planta
    • Martin K, Kopperud K, Chakrabarty R, Banerjee R, Brooks R, Goodin MM: Transient expression in Nicotiana benthamiana fluorescent marker lines provides enhanced definition of protein localization, movement and interactions in planta. Plant J 2009, 59:150-162.
    • (2009) Plant J , vol.59 , pp. 150-162
    • Martin, K.1    Kopperud, K.2    Chakrabarty, R.3    Banerjee, R.4    Brooks, R.5    Goodin, M.M.6
  • 73
    • 84887264085 scopus 로고    scopus 로고
    • An RxLR effector from Phytophthora infestans prevents re-localisation of two plant NAC transcription factors from the endoplasmic reticulum to the nucleus
    • McLellan H, Boevink PC, Armstrong MR, Pritchard L, Gomez S, Morales J, Beynon JL, Whisson SC, Birch PRJ: An RxLR effector from Phytophthora infestans prevents re-localisation of two plant NAC transcription factors from the endoplasmic reticulum to the nucleus. PLoS Pathog 2013. doi:10.1371/journal.ppat.1003670.
    • (2013) PLoS Pathog
    • McLellan, H.1    Boevink, P.C.2    Armstrong, M.R.3    Pritchard, L.4    Gomez, S.5    Morales, J.6    Beynon, J.L.7    Whisson, S.C.8    Birch, P.R.J.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.