-
1
-
-
33747892409
-
Automatic clustering of orthologs and inparalogs shared by multiple proteomes
-
Alexeyenko, A., Tamas, I., Liu, G., and Sonnhammer, E. L. L. (2006). Automatic clustering of orthologs and inparalogs shared by multiple proteomes. Bioinformatics 22, e9-e15. doi: 10.1093/bioinformatics/btl213
-
(2006)
Bioinformatics
, vol.22
, pp. ee9-e15
-
-
Alexeyenko, A.1
Tamas, I.2
Liu, G.3
Sonnhammer, E.L.L.4
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S., Gish, W., Miller, W., Myers, E., and Lipman, D. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.5
-
4
-
-
0035131986
-
Elevated expression of metal transporter genes in three accessions of the metal hyperaccumulator Thlaspi caerulescens
-
Assunção, A. G. L., Da Costa Martins, P., De Folter, S., Vooijs, R., Schat, H., and Aarts, M. G. M. (2001). Elevated expression of metal transporter genes in three accessions of the metal hyperaccumulator Thlaspi caerulescens. Plant Cell Environ. 24, 217-226. doi: 10.1111/j.1365-3040.2001.00666.x
-
(2001)
Plant Cell Environ
, vol.24
, pp. 217-226
-
-
Assunção, A.G.L.1
Da Costa Martins, P.2
De Folter, S.3
Vooijs, R.4
Schat, H.5
Aarts, M.G.M.6
-
5
-
-
33644637433
-
Construction of a genetic linkage map of Thlaspi caerulescens and quantitative trait loci analysis of zinc accumulation
-
Assunção, A. G. L., Pieper, B., Vromans, J., Lindhout, P., Aarts, M. G. M., and Schat, H. (2006). Construction of a genetic linkage map of Thlaspi caerulescens and quantitative trait loci analysis of zinc accumulation. New Phytol. 170, 21-32. doi: 10.1111/j.1469-8137.2005.01631.x
-
(2006)
New Phytol
, vol.170
, pp. 21-32
-
-
Assunção, A.G.L.1
Pieper, B.2
Vromans, J.3
Lindhout, P.4
Aarts, M.G.M.5
Schat, H.6
-
6
-
-
0041963112
-
Thlaspi caerulescens, an attractive model species to study heavy metal hyperaccumulation in plants
-
Assunção, A. G. L., Schat, H., and Aarts, M. G. M. (2003). Thlaspi caerulescens, an attractive model species to study heavy metal hyperaccumulation in plants. New Phytol. 159, 351-360. doi: 10.1046/j.1469-8137.2003.00820.x
-
(2003)
New Phytol
, vol.159
, pp. 351-360
-
-
Assunção, A.G.L.1
Schat, H.2
Aarts, M.G.M.3
-
7
-
-
1642564514
-
Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri
-
Becher, M., Talke, I. N., Krall, L., and Krämer, U. (2004). Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri. Plant J. 37, 251-268. doi: 10.1046/j.1365-313X.2003.01959.x
-
(2004)
Plant J
, vol.37
, pp. 251-268
-
-
Becher, M.1
Talke, I.N.2
Krall, L.3
Krämer, U.4
-
8
-
-
0000295679
-
The myrosinase-glucosinolate system, its organisation and biochemistry
-
Bones, A. M., and Rossiter, J. T. (1996). The myrosinase-glucosinolate system, its organisation and biochemistry. Physiol. Plant. 97, 194-208. doi: 10.1111/j.1399-3054.1996.tb00497.x
-
(1996)
Physiol. Plant
, vol.97
, pp. 194-208
-
-
Bones, A.M.1
Rossiter, J.T.2
-
9
-
-
0029134352
-
Zinc and cadmium uptake by hyperaccumulator Thlaspi caerulescens grown in nutrient solution
-
Brown, S., Angle, J., Chaney, R., and Baker, A. (1995). Zinc and cadmium uptake by hyperaccumulator Thlaspi caerulescens grown in nutrient solution. Soil Sci. Soc. Am. J. 59, 125-133.
-
(1995)
Soil Sci. Soc. Am. J
, vol.59
, pp. 125-133
-
-
Brown, S.1
Angle, J.2
Chaney, R.3
Baker, A.4
-
10
-
-
33747768893
-
Poorly known relatives of Arabidopsis thaliana
-
Clauss, M. J., and Koch, M. A. (2006). Poorly known relatives of Arabidopsis thaliana. Trends Plant Sci. 11, 449-459. doi: 10.1016/j.tplants.2006.07.005
-
(2006)
Trends Plant Sci
, vol.11
, pp. 449-459
-
-
Clauss, M.J.1
Koch, M.A.2
-
11
-
-
84866636167
-
Variation in HMA4 gene copy number and expression among Noccaea caerulescens populations presenting different levels of Cd tolerance and accumulation
-
Craciun, A. R., Meyer, C.-L., Chen, J., Roosens, N., De Groodt, R., Hilson, P., et al. (2012). Variation in HMA4 gene copy number and expression among Noccaea caerulescens populations presenting different levels of Cd tolerance and accumulation. J. Exp. Bot. 63, 4179-4189. doi: 10.1093/jxb/ers104
-
(2012)
J. Exp. Bot
, vol.63
, pp. 4179-4189
-
-
Craciun, A.R.1
Meyer, C.-L.2
Chen, J.3
Roosens, N.4
De Groodt, R.5
Hilson, P.6
-
12
-
-
84875853246
-
Heavy metal-associated isoprenylated plant protein (HIPP): Characterization of a family of proteins exclusive to plants
-
De Abreu-Neto, J. B., Turchetto-Zolet, A. C., De Oliveira, L. F. V., Bodanese Zanettini, M. H., and Margis-Pinheiro, M. (2013). Heavy metal-associated isoprenylated plant protein (HIPP): characterization of a family of proteins exclusive to plants. FEBS J. 280, 1604-1616. doi: 10.1111/febs.12159
-
(2013)
FEBS J
, vol.280
, pp. 1604-1616
-
-
De Abreu-Neto, J.B.1
Turchetto-Zolet, A.C.2
De Oliveira, L.F.V.3
Bodanese Zanettini, M.H.4
Margis-Pinheiro, M.5
-
13
-
-
33747686130
-
QTL analysis of cadmium and zinc accumulation in the heavy metal hyperaccumulator Thlaspi caerulescens
-
Deniau, A., Pieper, B., Ten Bookum, W., Lindhout, P., Aarts, M., and Schat, H. (2006). QTL analysis of cadmium and zinc accumulation in the heavy metal hyperaccumulator Thlaspi caerulescens. Theor. Appl. Gene. 113, 907-920. doi: 10.1007/s00122-006-0350-y
-
(2006)
Theor. Appl. Gene
, vol.113
, pp. 907-920
-
-
Deniau, A.1
Pieper, B.2
Ten Bookum, W.3
Lindhout, P.4
Aarts, M.5
Schat, H.6
-
14
-
-
84883826615
-
De novo assembly of the pennycress (Thlaspi arvense) transcriptome provides tools for the development of a winter cover crop and biodiesel feedstock
-
Dorn, K. M., Fankhauser, J. D., Wyse, D. L., and Marks, M. D. (2013). De novo assembly of the pennycress (Thlaspi arvense) transcriptome provides tools for the development of a winter cover crop and biodiesel feedstock. Plant J. 75, 1028-1038. doi: 10.1111/tpj.12267
-
(2013)
Plant J
, vol.75
, pp. 1028-1038
-
-
Dorn, K.M.1
Fankhauser, J.D.2
Wyse, D.L.3
Marks, M.D.4
-
15
-
-
34249809696
-
The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana
-
Gigolashvili, T., Berger, B., Mock, H.-P., Müller, C., Weisshaar, B., and Flügge, U.-I. (2007). The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana. Plant J. 50, 886-901. doi: 10.1111/j.1365-313X.2007.03099.x
-
(2007)
Plant J
, vol.50
, pp. 886-901
-
-
Gigolashvili, T.1
Berger, B.2
Mock, H.-P.3
Müller, C.4
Weisshaar, B.5
Flügge, U.-I.6
-
16
-
-
84856585935
-
Phytozome: A comparative platform for green plant genomics
-
Goodstein, D. M., Shu, S., Howson, R., Neupane, R., Hayes, R. D., Fazo, J., et al. (2012). Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 40, D1178-D1186. doi: 10.1093/nar/gkr944
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D1178-D1186
-
-
Goodstein, D.M.1
Shu, S.2
Howson, R.3
Neupane, R.4
Hayes, R.D.5
Fazo, J.6
-
17
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., and Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307-321. doi: 10.1093/sysbio/syq010
-
(2010)
Syst. Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.-F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
18
-
-
84898947842
-
Gene expression differences between Noccaea caerulescens ecotypes help to identify candidate genes for metal phytoremediation
-
Halimaa, P., Lin, Y.-F., Ahonen, V. H., Blande, D., Clemens, S., Gyenesei, A., et al. (2014). Gene expression differences between Noccaea caerulescens ecotypes help to identify candidate genes for metal phytoremediation. Environ. Sci. Technol. 48, 3344-3353. doi: 10.1021/es4042995
-
(2014)
Environ. Sci. Technol
, vol.48
, pp. 3344-3353
-
-
Halimaa, P.1
Lin, Y.-F.2
Ahonen, V.H.3
Blande, D.4
Clemens, S.5
Gyenesei, A.6
-
19
-
-
33645353345
-
A comparison of the Thlaspi caerulescens and Thlaspi arvense shoot transcriptomes
-
Hammond, J. P., Bowen, H. C., White, P. J., Mills, V., Pyke, K. A., Baker, A. J. M., et al. (2006). A comparison of the Thlaspi caerulescens and Thlaspi arvense shoot transcriptomes. New Phytol. 170, 239-260. doi: 10.1111/j.1469-8137.2006.01662.x
-
(2006)
New Phytol
, vol.170
, pp. 239-260
-
-
Hammond, J.P.1
Bowen, H.C.2
White, P.J.3
Mills, V.4
Pyke, K.A.5
Baker, A.J.M.6
-
20
-
-
79957674948
-
Metal hyperaccumulation and hypertolerance: A model for plant evolutionary genomics
-
Hanikenne, M., and Nouet, C. (2011). Metal hyperaccumulation and hypertolerance: a model for plant evolutionary genomics. Curr. Opin. Plant Biol. 14, 252-259. doi: 10.1016/j.pbi.2011.04.003
-
(2011)
Curr. Opin. Plant Biol
, vol.14
, pp. 252-259
-
-
Hanikenne, M.1
Nouet, C.2
-
21
-
-
43749100069
-
Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4
-
Hanikenne, M., Talke, I. N., Haydon, M. J., Lanz, C., Nolte, A., Motte, P., et al. (2008). Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4. Nature 453, 391-395. doi: 10.1038/nature06877
-
(2008)
Nature
, vol.453
, pp. 391-395
-
-
Hanikenne, M.1
Talke, I.N.2
Haydon, M.J.3
Lanz, C.4
Nolte, A.5
Motte, P.6
-
22
-
-
79955084925
-
Opportunities and feasibilities for biotechnological improvement of Zn, Cd or Ni tolerance and accumulation in plants
-
Hassan, Z., and Aarts, M. G. M. (2011). Opportunities and feasibilities for biotechnological improvement of Zn, Cd or Ni tolerance and accumulation in plants. Environ. Exp. Bot. 72, 53-63. doi: 10.1016/j.envexpbot.2010.04.003
-
(2011)
Environ. Exp. Bot
, vol.72
, pp. 53-63
-
-
Hassan, Z.1
Aarts, M.G.M.2
-
23
-
-
84881028642
-
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions
-
Haudry, A., Platts, A. E., Vello, E., Hoen, D. R., Leclercq, M., Williamson, R. J., et al. (2013). An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nat. Genet. 45, 891-898. doi: 10.1038/ng.2684
-
(2013)
Nat. Genet
, vol.45
, pp. 891-898
-
-
Haudry, A.1
Platts, A.E.2
Vello, E.3
Hoen, D.R.4
Leclercq, M.5
Williamson, R.J.6
-
24
-
-
84895072465
-
The current status of the elemental defense hypothesis in relation to pathogens
-
Hoerger, A. C., Fones, H. N., and Preston, G. (2013). The current status of the elemental defense hypothesis in relation to pathogens. Front. Plant Sci. 4:395. doi: 10.3389/fpls.2013.00395
-
(2013)
Front. Plant Sci
, vol.4
, pp. 395
-
-
Hoerger, A.C.1
Fones, H.N.2
Preston, G.3
-
25
-
-
76749100709
-
ETE: A python environment for tree exploration
-
Huerta-Cepas, J., Dopazo, J., and Gabaldón, T. (2010). ETE: a python environment for tree exploration. BMC Bioinformatics 11:24. doi: 10.1186/1471-2105-11-24
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 24
-
-
Huerta-Cepas, J.1
Dopazo, J.2
Gabaldón, T.3
-
26
-
-
84868007353
-
Dendroscope 3: An interactive tool for rooted phylogenetic trees and networks
-
Huson, D. H., and Scornavacca, C. (2012). Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks. Syst. Biol. 61, 1061-1067. doi: 10.1093/sysbio/sys062
-
(2012)
Syst. Biol
, vol.61
, pp. 1061-1067
-
-
Huson, D.H.1
Scornavacca, C.2
-
27
-
-
84901006250
-
Expression of HMA4 cDNAs of the zinc hyperaccumulator Noccaea caerulescens from endogenous NcHMA4 promoters does not complement the zinc-deficiency phenotype of the Arabidopsis thaliana hma2hma4 double mutant
-
Iqbal, M., Nawaz, I., Hassan, Z., Hakvoort, H. W. J., Bliek, M., Aarts, M. G. M., et al. (2013). Expression of HMA4 cDNAs of the zinc hyperaccumulator Noccaea caerulescens from endogenous NcHMA4 promoters does not complement the zinc-deficiency phenotype of the Arabidopsis thaliana hma2hma4 double mutant. Front. Plant Sci. 4:404. doi: 10.3389/fpls.2013.00404
-
(2013)
Front. Plant Sci
, vol.4
, pp. 404
-
-
Iqbal, M.1
Nawaz, I.2
Hassan, Z.3
Hakvoort, H.W.J.4
Bliek, M.5
Aarts, M.G.M.6
-
28
-
-
0036226603
-
BLAT—the blast-like alignment tool
-
Kent, W. J. (2002). BLAT—the blast-like alignment tool. Genome Res. 12, 656-664. doi: 10.1101/gr.229202
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
29
-
-
84888003828
-
Taxonomy and systematics are key to biological information: Arabidopsis, Eutrema (Thellungiella), Noccaea and Schrenkiella (Brassicaceae) as examples
-
Koch, M. A., and German, D. (2013). Taxonomy and systematics are key to biological information: Arabidopsis, Eutrema (Thellungiella), Noccaea and Schrenkiella (Brassicaceae) as examples. Front. Plant Sci. 4:267. doi: 10.3389/fpls.2013.00267
-
(2013)
Front. Plant Sci
, vol.4
, pp. 267
-
-
Koch, M.A.1
German, D.2
-
30
-
-
34248213078
-
Transition metal transport
-
Krämer, U., Talke, I. N., and Hanikenne, M. (2007). Transition metal transport. FEBS Lett. 581, 2263-2272. doi: 10.1016/j.febslet.2007.04.010
-
(2007)
FEBS Lett
, vol.581
, pp. 2263-2272
-
-
Krämer, U.1
Talke, I.N.2
Hanikenne, M.3
-
31
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948. doi: 10.1093/bioinformatics/btm404
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
-
32
-
-
45849154166
-
An improved general amino acid replacement matrix
-
Le, S. Q., and Gascuel, O. (2008). An improved general amino acid replacement matrix. Mol. Biol. Evol. 25, 1307-1320. doi: 10.1093/molbev/msn067
-
(2008)
Mol. Biol. Evol
, vol.25
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
-
33
-
-
84887378836
-
Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum)
-
Lee, Y., Giorgi, F., Lohse, M., Kvederaviciute, K., Klages, S., Usadel, B., et al. (2013). Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum). BMC Genomics 14:793. doi: 10.1186/1471-2164-14-793
-
(2013)
BMC Genomics
, vol.14
, pp. 793
-
-
Lee, Y.1
Giorgi, F.2
Lohse, M.3
Kvederaviciute, K.4
Klages, S.5
Usadel, B.6
-
34
-
-
84866384507
-
The molecular mechanism of zinc and cadmium stress response in plants
-
Lin, Y.-F., and Aarts, M. G. M. (2012). The molecular mechanism of zinc and cadmium stress response in plants. Cell. Mol. Life Sci. 69, 3187-3206. doi: 10.1007/s00018-012-1089-z
-
(2012)
Cell. Mol. Life Sci
, vol.69
, pp. 3187-3206
-
-
Lin, Y.-F.1
Aarts, M.G.M.2
-
35
-
-
0033979652
-
Cadmium accumulation in populations of Thlaspi caerulescens and Thlaspi goesingense
-
Lombi, E., Zhao, F. J., Dunham, S. J., and McGrath, S. P. (2000). Cadmium accumulation in populations of Thlaspi caerulescens and Thlaspi goesingense. New Phytol. 145, 11-20. doi: 10.1046/j.1469-8137.2000.00560.x
-
(2000)
New Phytol
, vol.145
, pp. 11-20
-
-
Lombi, E.1
Zhao, F.J.2
Dunham, S.J.3
McGrath, S.P.4
-
36
-
-
33750483615
-
AgBase: A functional genomics resource for agriculture
-
McCarthy, F., Wang, N., Magee, G. B., Nanduri, B., Lawrence, M., Camon, E., et al. (2006). AgBase: a functional genomics resource for agriculture. BMC Genomics 7:229. doi: 10.1186/1471-2164-7-229
-
(2006)
BMC Genomics
, vol.7
, pp. 229
-
-
McCarthy, F.1
Wang, N.2
Magee, G.B.3
Nanduri, B.4
Lawrence, M.5
Camon, E.6
-
37
-
-
0001737921
-
The potential for the use of metal-accumulating plants for the in situ decontamination of metal-polluted soils
-
eds H. J. P. Eijsackers and T. Hamers (Dordrecht: Kluwer Academic Publishers
-
McGrath, S. P., Sidoli, C. M. D., Baker, A. J. M., and Reeves, R. D. (1993). “The potential for the use of metal-accumulating plants for the in situ decontamination of metal-polluted soils,” in Integrated Soil and Sediment Research: A Basis for Proper Protection, (Proceedings of the European Conference on Integrated Research for Soil and Sediment Protection and Remediation, EUROSOL, MECC Maastricht, The Netherlands), eds H. J. P. Eijsackers and T. Hamers (Dordrecht: Kluwer Academic Publishers), 673-676.
-
(1993)
Integrated Soil and Sediment Research: A Basis for Proper Protection, (Proceedings of the European Conference on Integrated Research for Soil and Sediment Protection and Remediation, EUROSOL, MECC Maastricht, the Netherlands)
, pp. 673-676
-
-
McGrath, S.P.1
Sidoli, C.M.D.2
Baker, A.J.M.3
Reeves, R.D.4
-
38
-
-
72849144434
-
Sequencing technologies-the next generation
-
Metzker, M. L. (2010). Sequencing technologies-the next generation. Nat. Rev. Genet. 11, 31-46. doi: 10.1038/nrg2626
-
(2010)
Nat. Rev. Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
39
-
-
84867650371
-
The use of the model species Arabidopsis halleri towards phytoextraction of cadmium polluted soils
-
Meyer, C.-L., and Verbruggen, N. (2012). The use of the model species Arabidopsis halleri towards phytoextraction of cadmium polluted soils. N. Biotechnol. 30, 9-14. doi: 10.1016/j.nbt.2012.07.009
-
(2012)
N. Biotechnol
, vol.30
, pp. 9-14
-
-
Meyer, C.-L.1
Verbruggen, N.2
-
40
-
-
45949110511
-
Investigating heavy-metal hyperaccumulation using Thlaspi caerulescens as a model system
-
Milner, M. J., and Kochian, L. V. (2008). Investigating heavy-metal hyperaccumulation using Thlaspi caerulescens as a model system. Ann. Bot. 102, 3-13. doi: 10.1093/aob/mcn063
-
(2008)
Ann. Bot
, vol.102
, pp. 3-13
-
-
Milner, M.J.1
Kochian, L.V.2
-
41
-
-
84858007346
-
A comparison of lead accumulation and tolerance among heavy metal hyperaccumulating and non-hyperaccumulating metallophytes
-
Mohtadi, A., Ghaderian, S., and Schat, H. (2012). A comparison of lead accumulation and tolerance among heavy metal hyperaccumulating and non-hyperaccumulating metallophytes. Plant Soil 352, 267-276. doi: 10.1007/s11104-011-0994-5
-
(2012)
Plant Soil
, vol.352
, pp. 267-276
-
-
Mohtadi, A.1
Ghaderian, S.2
Schat, H.3
-
42
-
-
70350218818
-
Applications of new sequencing technologies for transcriptome analysis
-
Morozova, O., Hirst, M., and Marra, M. A. (2009). Applications of new sequencing technologies for transcriptome analysis. Annu. Rev. Genomics Hum. Genet. 10, 135-151. doi: 10.1146/annurev-genom-082908-145957
-
(2009)
Annu. Rev. Genomics Hum. Genet
, vol.10
, pp. 135-151
-
-
Morozova, O.1
Hirst, M.2
Marra, M.A.3
-
43
-
-
79959212998
-
Landscape of next-generation sequencing technologies
-
Niedringhaus, T. P., Milanova, D., Kerby, M. B., Snyder, M. P., and Barron, A. E. (2011). Landscape of next-generation sequencing technologies. Anal. Chem. 83, 4327-4341. doi: 10.1021/ac2010857
-
(2011)
Anal. Chem
, vol.83
, pp. 4327-4341
-
-
Niedringhaus, T.P.1
Milanova, D.2
Kerby, M.B.3
Snyder, M.P.4
Barron, A.E.5
-
44
-
-
34247341694
-
Do metal-rich plants deter herbivores?
-
Noret, N., Meerts, P., Vanhaelen, M., Santos, A. D., and Escarré, J. (2007). Do metal-rich plants deter herbivores? A field test of the defence hypothesis. Oecologia 152, 92-100. doi: 10.1007/s00442-006-0635-5
-
(2007)
A Field Test of the Defence Hypothesis. Oecologia
, vol.152
, pp. 92-100
-
-
Noret, N.1
Meerts, P.2
Vanhaelen, M.3
Santos, A.D.4
Escarré, J.5
-
45
-
-
84865206069
-
NRT/PTR transporters are essential for translocation of glucosinolate defence compounds to seeds
-
Nour-Eldin, H. H., Andersen, T. G., Burow, M., Madsen, S. R., Jorgensen, M. E., Olsen, C. E., et al. (2012). NRT/PTR transporters are essential for translocation of glucosinolate defence compounds to seeds. Nature 488, 531-534. doi: 10.1038/nature11285
-
(2012)
Nature
, vol.488
, pp. 531-534
-
-
Nour-Eldin, H.H.1
Ersen, T.G.2
Burow, M.3
Madsen, S.R.4
Jorgensen, M.E.5
Olsen, C.E.6
-
46
-
-
79952505086
-
Tandem quadruplication of HMA4 in the zinc (Zn) and cadmium (Cd) hyperaccumulator Noccaea caerulescens
-
Ó Lochlainn, S., Bowen, H. C., Fray, R. G., Hammond, J. P., King, G. J., White, P. J., et al. (2011). Tandem quadruplication of HMA4 in the zinc (Zn) and cadmium (Cd) hyperaccumulator Noccaea caerulescens. PLoS ONE 6:e17814. doi: 10.1371/journal.pone.0017814
-
(2011)
Plos ONE
, vol.6
-
-
Ó Lochlainn, S.1
Bowen, H.C.2
Fray, R.G.3
Hammond, J.P.4
King, G.J.5
White, P.J.6
-
47
-
-
33748766347
-
Assessment of plants from the Brassicaceae family as genetic models for the study of nickel and zinc hyperaccumulation
-
Peer, W. A., Mahmoudian, M., Freeman, J. L., Lahner, B., Richards, E. L., Reeves, R. D., et al. (2006). Assessment of plants from the Brassicaceae family as genetic models for the study of nickel and zinc hyperaccumulation. New Phytol. 172, 248-260. doi: 10.1111/j.1469-8137.2006.01820.x
-
(2006)
New Phytol
, vol.172
, pp. 248-260
-
-
Peer, W.A.1
Mahmoudian, M.2
Freeman, J.L.3
Lahner, B.4
Richards, E.L.5
Reeves, R.D.6
-
48
-
-
0042964866
-
Identifying model metal hyperaccumulating plants: Germplasm analysis of 20 Brassicaceae accessions from a wide geographical area
-
Peer, W. A., Mamoudian, M., Lahner, B., Reeves, R. D., Murphy, A. S., and Salt, D. E. (2003). Identifying model metal hyperaccumulating plants: germplasm analysis of 20 Brassicaceae accessions from a wide geographical area. New Phytol. 159, 421-430. doi: 10.1046/j.1469-8137.2003.00822.x
-
(2003)
New Phytol
, vol.159
, pp. 421-430
-
-
Peer, W.A.1
Mamoudian, M.2
Lahner, B.3
Reeves, R.D.4
Murphy, A.S.5
Salt, D.E.6
-
49
-
-
79953067657
-
Metabolic engineering in Nicotiana benthamiana reveals key enzyme functions in Arabidopsis indole glucosinolate modification
-
Pfalz, M., Mikkelsen, M. D., Bednarek, P., Olsen, C. E., Halkier, B. A., and Kroymann, J. (2011). Metabolic engineering in Nicotiana benthamiana reveals key enzyme functions in Arabidopsis indole glucosinolate modification. Plant Cell 23, 716-729. doi: 10.1105/tpc.110.081711
-
(2011)
Plant Cell
, vol.23
, pp. 716-729
-
-
Pfalz, M.1
Mikkelsen, M.D.2
Bednarek, P.3
Olsen, C.E.4
Halkier, B.A.5
Kroymann, J.6
-
50
-
-
77949262331
-
Comparison of two ecotypes of the metal hyperaccumulator Thlaspi caerulescens (J. & C. PRESL) at the transcriptional level
-
Plessl, M., Rigola, D., Hassinen, V., Tervahauta, A., Kärenlampi, S., Schat, H., et al. (2010). Comparison of two ecotypes of the metal hyperaccumulator Thlaspi caerulescens (J. & C. PRESL) at the transcriptional level. Protoplasma 239, 81-93. doi: 10.1007/s00709-009-0085-0
-
(2010)
Protoplasma
, vol.239
, pp. 81-93
-
-
Plessl, M.1
Rigola, D.2
Hassinen, V.3
Tervahauta, A.4
Kärenlampi, S.5
Schat, H.6
-
51
-
-
0020970212
-
European species of Thlaspi L. (Cruciferae) as indicators of nickel and zinc
-
Reeves, R. D., and Brooks, R. R. (1983). European species of Thlaspi L. (Cruciferae) as indicators of nickel and zinc. J. Geochem. Explor. 18, 275-283.
-
(1983)
J. Geochem. Explor
, vol.18
, pp. 275-283
-
-
Reeves, R.D.1
Brooks, R.R.2
-
52
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm, M., Storm, C. E. V., and Sonnhammer, E. L. L. (2001). Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol. 314, 1041-1052. doi: 10.1006/jmbi.2000.5197
-
(2001)
J. Mol. Biol
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.V.2
Sonnhammer, E.L.L.3
-
53
-
-
33645355768
-
The heavy metal hyperaccumulator Thlaspi caerulescens expresses many species-specific genes, as identified by comparative expressed sequence tag analysis
-
Rigola, D., Fiers, M., Vurro, E., and Aarts, M. G. M. (2006). The heavy metal hyperaccumulator Thlaspi caerulescens expresses many species-specific genes, as identified by comparative expressed sequence tag analysis. New Phytol. 170, 753-766. doi: 10.1111/j.1469-8137.2006.01714.x
-
(2006)
New Phytol
, vol.170
, pp. 753-766
-
-
Rigola, D.1
Fiers, M.2
Vurro, E.3
Aarts, M.G.M.4
-
54
-
-
7544242621
-
Evidence for copper homeostasis function of metallothionein (MT3) in the hyperaccumulator Thlaspi caerulescens
-
Roosens, N. H., Bernard, C., Leplae, R., and Verbruggen, N. (2004). Evidence for copper homeostasis function of metallothionein (MT3) in the hyperaccumulator Thlaspi caerulescens. FEBS Lett. 577, 9-16. doi: 10.1016/j.febslet.2004.08.084
-
(2004)
FEBS Lett
, vol.577
, pp. 9-16
-
-
Roosens, N.H.1
Bernard, C.2
Leplae, R.3
Verbruggen, N.4
-
55
-
-
84884679689
-
Arabidopsis basic Helix-Loop-Helix transcription factors MYC2, MYC3, and MYC4 regulate glucosinolate biosynthesis, insect performance, and feeding behavior
-
Schweizer, F., Fernández-Calvo, P., Zander, M., Diez-Diaz, M., Fonseca, S., Glauser, G., et al. (2013). Arabidopsis basic Helix-Loop-Helix transcription factors MYC2, MYC3, and MYC4 regulate glucosinolate biosynthesis, insect performance, and feeding behavior. Plant Cell 25, 3117-3132. doi: 10.1105/tpc.113.115139
-
(2013)
Plant Cell
, vol.25
, pp. 3117-3132
-
-
Schweizer, F.1
Fernández-Calvo, P.2
Zander, M.3
Diez-Diaz, M.4
Fonseca, S.5
Glauser, G.6
-
56
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
Slater, G., and Birney, E. (2005). Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 6:31. doi: 10.1186/1471-2105-6-31
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 31
-
-
Slater, G.1
Birney, E.2
-
57
-
-
77951986187
-
A complex interplay of three R2R3 MYB transcription factors determines the profile of aliphatic glucosinolates in Arabidopsis
-
Sønderby, I. E., Burow, M., Rowe, H. C., Kliebenstein, D. J., and Halkier, B. A. (2010a). A complex interplay of three R2R3 MYB transcription factors determines the profile of aliphatic glucosinolates in Arabidopsis. Plant Physiol. 153, 348-363. doi: 10.1104/pp.109.149286
-
(2010)
Plant Physiol
, vol.153
, pp. 348-363
-
-
Sønderby, I.E.1
Burow, M.2
Rowe, H.C.3
Kliebenstein, D.J.4
Halkier, B.A.5
-
58
-
-
77953366823
-
Biosynthesis of glucosinolates-gene discovery and beyond
-
Sønderby, I. E., Geu-Flores, F., and Halkier, B. A. (2010b). Biosynthesis of glucosinolates-gene discovery and beyond. Trends Plant Sci. 15, 283-290. doi: 10.1016/j.tplants.2010.02.005
-
(2010)
Trends Plant Sci
, vol.15
, pp. 283-290
-
-
Sønderby, I.E.1
Geu-Flores, F.2
Halkier, B.A.3
-
59
-
-
33748807080
-
Zinc-dependent global transcriptional control, transcriptional deregulation, and higher gene copy number for genes in metal homeostasis of the hyperaccumulator Arabidopsis halleri
-
Talke, I. N., Hanikenne, M., and Kramer, U. (2006). Zinc-dependent global transcriptional control, transcriptional deregulation, and higher gene copy number for genes in metal homeostasis of the hyperaccumulator Arabidopsis halleri. Plant Physiol. 142, 148-167. doi: 10.1104/pp.105.076232
-
(2006)
Plant Physiol
, vol.142
, pp. 148-167
-
-
Talke, I.N.1
Hanikenne, M.2
Kramer, U.3
-
60
-
-
79957621132
-
Elevated expression of TcHMA3 plays a key role in the extreme Cd tolerance in a Cd-hyperaccumulating ecotype of Thlaspi caerulescens
-
Ueno, D., Milner, M. J., Yamaji, N., Yokosho, K., Koyama, E., Clemencia Zambrano, M., et al. (2011). Elevated expression of TcHMA3 plays a key role in the extreme Cd tolerance in a Cd-hyperaccumulating ecotype of Thlaspi caerulescens. Plant J. 66, 852-862. doi: 10.1111/j.1365-313X.2011.04548.x
-
(2011)
Plant J
, vol.66
, pp. 852-862
-
-
Ueno, D.1
Milner, M.J.2
Yamaji, N.3
Yokosho, K.4
Koyama, E.5
Clemencia Zambrano, M.6
-
61
-
-
33751119021
-
Large expression differences in genes for iron and zinc homeostasis, stress response, and lignin biosynthesis distinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens
-
Van De Mortel, J. E., Almar Villanueva, L., Schat, H., Kwekkeboom, J., Coughlan, S., Moerland, P. D., et al. (2006). Large expression differences in genes for iron and zinc homeostasis, stress response, and lignin biosynthesis distinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens. Plant Physiol. 142, 1127-1147. doi: 10.1104/pp.106.082073
-
(2006)
Plant Physiol
, vol.142
, pp. 1127-1147
-
-
Van De Mortel, J.E.1
Almar Villanueva, L.2
Schat, H.3
Kwekkeboom, J.4
Coughlan, S.5
Moerland, P.D.6
-
62
-
-
38849135951
-
Expression differences for genes involved in lignin, glutathione and sulphate metabolism in response to cadmium in Arabidopsis thaliana and the related Zn/Cd-hyperaccumulator Thlaspi caerulescens
-
Van De Mortel, J. E., Schat, H., Moerland, P. D., Ver LorenVanThemaat, E., Van Der Ent, S., Blankestijn, H., et al. (2008). Expression differences for genes involved in lignin, glutathione and sulphate metabolism in response to cadmium in Arabidopsis thaliana and the related Zn/Cd-hyperaccumulator Thlaspi caerulescens. Plant Cell Environ. 31, 301-324. doi: 10.1111/j.1365-3040.2007.01764.x
-
(2008)
Plant Cell Environ
, vol.31
, pp. 301-324
-
-
Van De Mortel, J.E.1
Schat, H.2
Moerland, P.D.3
Ver Lorenvanthemaat, E.4
Van Der Ent, S.5
Blankestijn, H.6
-
63
-
-
84881287112
-
Tolerance to cadmium in plants: The special case of hyperaccumulators
-
Verbruggen, N., Juraniec, M., Baliardini, C., and Meyer, C.-L. (2013). Tolerance to cadmium in plants: the special case of hyperaccumulators. Biometals 26, 633-638. doi: 10.1007/s10534-013-9659-6
-
(2013)
Biometals
, vol.26
, pp. 633-638
-
-
Verbruggen, N.1
Juraniec, M.2
Baliardini, C.3
Meyer, C.-L.4
-
64
-
-
80052888450
-
Glucosinolate biosynthetic genes in Brassica rapa
-
Wang, H., Wu, J., Sun, S., Liu, B., Cheng, F., Sun, R., et al. (2011). Glucosinolate biosynthetic genes in Brassica rapa. Gene 487, 135-142. doi: 10.1016/j.gene.2011.07.021
-
(2011)
Gene
, vol.487
, pp. 135-142
-
-
Wang, H.1
Wu, J.2
Sun, S.3
Liu, B.4
Cheng, F.5
Sun, R.6
-
65
-
-
65449188232
-
Jalview Version 2—a multiple sequence alignment editor and analysis workbench
-
Waterhouse, A. M., Procter, J. B., Martin, D. M. A., Clamp, M., and Barton, G. J. (2009). Jalview Version 2—a multiple sequence alignment editor and analysis workbench. Bioinformatics 25, 1189-1191. doi: 10.1093/bioinformatics/btp033
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.A.3
Clamp, M.4
Barton, G.J.5
-
66
-
-
1642523628
-
Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors
-
Weber, M., Harada, E., Vess, C., Roepenack-Lahaye, E. V., and Clemens, S. (2004). Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors. Plant J. 37, 269-281. doi: 10.1046/j.1365-313X.2003.01960.x
-
(2004)
Plant J
, vol.37
, pp. 269-281
-
-
Weber, M.1
Harada, E.2
Vess, C.3
Roepenack-Lahaye, E.V.4
Clemens, S.5
-
67
-
-
71149109115
-
Identification and functional analysis of two ZIP metal transporters of the hyperaccumulator Thlaspi caerulescens
-
Wu, J., Zhao, F.-J., Ghandilyan, A., Logoteta, B., Guzman, M., Schat, H., et al. (2009). Identification and functional analysis of two ZIP metal transporters of the hyperaccumulator Thlaspi caerulescens. Plant Soil 325, 79-95. doi: 10.1007/s11104-009-0151-6
-
(2009)
Plant Soil
, vol.325
, pp. 79-95
-
-
Wu, J.1
Zhao, F.-J.2
Ghandilyan, A.3
Logoteta, B.4
Guzman, M.5
Schat, H.6
-
68
-
-
84879701074
-
The reference genome of the halophytic plant Eutrema salsugineum
-
Yang, R., Jarvis, D. J., Chen, H., Beilstein, M., Grimwood, J., Jenkins, J., et al. (2013). The reference genome of the halophytic plant Eutrema salsugineum. Front. Plant Sci. 4:46. doi: 10.3389/fpls.2013.00046
-
(2013)
Front. Plant Sci
, vol.4
, pp. 46
-
-
Yang, R.1
Jarvis, D.J.2
Chen, H.3
Beilstein, M.4
Grimwood, J.5
Jenkins, J.6
|