SMAP: A streamlined methylation analysis pipeline for bisulfite sequencing

GigaScience

Volumn 4, Issue 1, 2015, Pages

  Gao, Shengjie ^a,b,e   Zou, Dan ^b,c   Mao, Likai ^b,h   Zhou, Quan ^b   Jia, Wenlong ^b,f   Huang, Yi ^d   Zhao, Shancen ^b   Chen, Gang ^b   Wu, Song ^d   Li, Dongdong ^b   Xia, Fei ^g   Chen, Huafeng ^b   Chen, Maoshan ^b   Ørntoft, Torben F ^a   Bolund, Lars ^b,e   Sørensen, Karina D ^a  

^a AARHUS UNIVERSITY HOSPITAL   (Denmark)

^b BGI ARK Biotechnology Co   (China)

^c NATIONAL UNIVERSITY OF DEFENSE TECHNOLOGY   (China)

^d THE FIRST AFFILIATED HOSPITAL OF SHENZHEN UNIVERSITY   (China)

^e AARHUS UNIVERSITY   (Denmark)

^f CITY UNIVERSITY OF HONG KONG   (Hong Kong)

^g NAVAL UNIVERSITY OF ENGINEERING   (China)

^h QIMR BERGHOFER MEDICAL RESEARCH INSTITUTE   (Australia)

Author keywords

Allele specific DNA methylation (ASM); Differentially methylated region (DMR); Reduced representation bisulfite sequencing (RRBS)

Indexed keywords

ALLELE; APPLICATION SERVICE PROVIDER; ARTICLE; BIOINFORMATICS; BISULFITE SEQUENCING; CALCULATION; COMPARATIVE STUDY; COMPUTER ANALYSIS; COMPUTER GRAPHICS; COMPUTER INTERFACE; COMPUTER SIMULATION; CONTROLLED STUDY; DATA ANALYSIS; DATA ANALYSIS SOFTWARE; DNA METHYLATION; DNA METHYLATION ASSAY; GENETIC ALGORITHM; MEDICAL INFORMATICS; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; ALGORITHM; CHEMISTRY;

HYDROGEN SULFITE; SULFITE;

ALGORITHMS; DNA METHYLATION; POLYMORPHISM, SINGLE NUCLEOTIDE; SULFITES;

EID: 84979518355     PISSN: None     EISSN: 2047217X     Source Type: Journal    
DOI: 10.1186/s13742-015-0070-9     Document Type: Article

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