Spirosoma aerophilum sp. nov., isolated from an air sample

International Journal of Systematic and Evolutionary Microbiology

Volumn 66, Issue 6, 2016, Pages 2342-2346

  Kim, Soo Jin ^a   Ahn, Jae Hyung ^a   Weon, Hang Yeon ^a   Hong, Seung Beom ^a   Seok, Soon Ja ^a   Kim, Jeong Seon ^a   Kwon, Soon Wo ^a  

^a National Institute of Animal Science   (South Korea)

Author keywords

16S rRNA gene; Polar lipid; Spirosoma aerophilum

Indexed keywords

AMINOPHOSPHOLIPID; FATTY ACID; PHOSPHATIDYLETHANOLAMINE; RNA 16S; BACTERIAL DNA; FARNOQUINONE; PHOSPHOLIPID; VITAMIN MK 7;

AIR SAMPLING; ARTICLE; BACTERIUM ISOLATION; DNA BASE COMPOSITION; DNA CONTENT; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; NONHUMAN; PHYLOGENETIC TREE; PRIORITY JOURNAL; SPIROSOMA AEROPHILUM; AIR; ANALOGS AND DERIVATIVES; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; FLEXIBACTERACEAE; GENETICS; ISOLATION AND PURIFICATION; PHYLOGENY; SOUTH KOREA;

AIR MOVEMENTS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CYTOPHAGACEAE; DNA, BACTERIAL; FATTY ACIDS; PHOSPHATIDYLETHANOLAMINES; PHOSPHOLIPIDS; PHYLOGENY; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; VITAMIN K 2;

EID: 84979240799     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijsem.0.001037     Document Type: Article

References (20)

1. Ahn, J. H., Weon, H. Y., Kim, S. J., Hong, S. B., Seok, S. J. & Kwon, S. W. (2014). Spirosoma oryzae sp. nov., isolated from rice soil and emended description of the genus Spirosoma. Int J Syst Evol Microbiol 64, 3230–3234.
2. Baik, K. S., Kim, M. S., Park, S. C., Lee, D. W., Lee, S. D., Ka, J. O., Choi, S. K. & Seong, C. N. (2007). Spirosoma rigui sp. nov., isolated from fresh water. Int J Syst Evol Microbiol 57, 2870–2873.
3. Breznak, J. A. & Costilow, R. N. (1994). Physicochemical factors growth. In Methods for General and Molecular Bacteriology, pp. 137– 154. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
4. Chang, X., Jiang, F., Wang, T., Kan, W., Qu, Z., Ren, L., Fang, C. & Peng, F. (2014). Spirosoma arcticum sp. nov., isolated from high arctic glacial till. Int J Syst Evol Microbiol 64, 2233–2237.
5. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: A maximum likelihood approach. J Mol Evol 17, 368–376.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783–791.
7. Finster, K. W., Herbert, R. A. & Lomstein, B. A. (2009). Spirosomaspits-bergense sp. nov. and Spirosoma luteum sp. nov., isolated from a high arctic permafrost soil, and emended description of the genus Spirosoma. Int J Syst Evol Microbiol 59, 839–844.
8. Fitch, W. M. (1971). Toward defining the course of evolution: Minimum change for a specific tree topology. Syst Zool 20, 406–416.
9. Fries, J., Pfeiffer, S., Kuffner, M. & Sessitsch, A. (2013). Spirosoma endophyticum sp. nov., isolated from Zn- and Cd-accumulating Salix caprea. Int J Syst Evol Microbiol 63, 4586–4590.
10. Gonzalez, J. M. & Saiz-Jimenez, C. (2002). A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 4, 770–773.
11. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors. (2012). Introducing EzTaxon-e: A prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716–721.
12. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111–120.
13. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115–175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
14. AL. In Bergey’s Manual of Systematic Bacteriology, vol. 1, pp. 125–126. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
15. Minnikin, D. E., O’Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233–241.
16. Pruesse, E., Peplies, J. & Glöckner, F. O. (2012). SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28, 1823–1829.
17. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425.
18. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607–653. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
19. Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013). MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30, 2725–2729.
20. Ten, L. N., Xu, J. L., Jin, F. X., Im, W. T., Oh, H. M. & Lee, S. T. (2009). Spirosoma panaciterrae sp. nov., isolated from soil. Int J Syst Evol Microbiol 59, 331–335.