Genome sequence of a bornavirus recovered from an African garter snake (Elapsoidea loveridgei)

Genome Announcements

Volumn 2, Issue 5, 2014, Pages

  Stenglein, Mark D ^a,d   Leavitt, Eli B ^a   Abramovitch, Michael A ^a   McGuire, Jimmy A ^b   DeRisi, Joseph L ^a,c  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^d Department of Environmental and Radiological Health Sciences   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84979210160     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00779-14     Document Type: Article

References (12)

1. Marschang RE. 2011. Viruses infecting reptiles. Viruses 3:2087-2126. http://dx.doi.org/10.3390/v3112087.
2. Latney LV, Wellehan J. 2013. Selected emerging infectious diseases of Squamata. Vet. Clin. North Am. Exot. Anim. Pract. 16:319-338. http://dx.doi.org/10.1016/j.cvex.2013.01.003.
3. Jacobson ER. 2007. Infectious diseases and pathology of reptiles: color atlas and text. CRC Press/Taylor & Francis, Boca Raton, FL.
4. Stenglein MD, Sanders C, Kistler AL, Ruby JG, Franco JY, Reavill DR, Dunker F, Derisi JL. 2012. Identification, characterization, and in vitro culture of highly divergent arenaviruses from boa constrictors and annulated tree boas: candidate etiological agents for snake inclusion body disease. mBio 3(4):e00180-12. http://dx.doi.org/10.1128/mBio.00180-12.
5. Hyndman TH, Marschang RE, Wellehan JFX, Jr, Nicholls PK. 2012. Isolation and molecular identification of Sunshine virus, a novel paramyxovirus found in Australian snakes. Infect. Genet. Evol. 12: 1436-1446. http://dx.doi.org/10.1016/j.meegid.2012.04.022.
6. Lipkin WI, Briese T. 2007. Bornaviridae, p 1829-1851. In Knipe DM, Howley PM (ed), Fields Virology, 5th ed. Lippincott Williams & Wilkins, Philadelphia, PA.
7. Kistler AL, Gancz A, Clubb S, Skewes-Cox P, Fischer K, Sorber K, Chiu CY, Lublin A, Mechani S, Farnoushi Y, Greninger A, Wen CC, Karlene SB, Ganem D, Derisi JL. 2008. Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent. Virol. J. 5:88. http://dx.doi.org/10.1186/1743-422X-5-88.
8. Francischetti IM, My-Pham V, Harrison J, Garfield MK, Ribeiro JM. 2004 Bitis gabonica (gaboon viper) snake venom gland: toward a catalog for the full-length transcripts (cDNA) and proteins. Gene 337:55-69. http://dx.doi.org/10.1016/j.gene.2004.03.024.
9. Horie M, Honda T, Suzuki Y, Kobayashi Y, Daito T, Oshida T, Ikuta K, Jern P, Gojobori T, Coffin JM, Tomonaga K. 2010. Endogenous nonretroviral RNA virus elements in mammalian genomes. Nature 463: 84-87. http://dx.doi.org/10.1038/nature08695.
10. Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A. 2011. Full-length transcriptome assembly from RNA-Seq data. Nat. Biotechnol. 29:644-652. http://dx.doi.org/10.1038/nbt.1883.
11. Ruby JG, Bellare P, DeRisi JL. 2013. PRICE: software for the targeted assembly of components of (Meta)genomic sequence data. G3 (Bethesda) 3:865-880. http://dx.doi.org/10.1534/g3.113.005967.
12. Ladner JT, Beitzel B, Chain PS, Davenport MG, Donaldson EF, Frieman M, Kugelman JR, Kuhn JH, O'Rear J, Sabeti PC, Wentworth DE, Wiley MR, Yu GY, The Threat Characterization Consortium, Sozhamannan S, Bradburne C, Palacios G. 2014. Standards for sequencing viral genomes in the era of high-throughput sequencing. mBio 5(3): e01360-14. http://dx.doi.org/10.1128/mBio.01360-14.