Menga: A new comprehensive tool for the integration of neuroimaging data and the allen human brain transcriptome atlas

PLoS ONE

Volumn 11, Issue 2, 2016, Pages

  Rizzo, Gaia ^a   Veronese, Mattia ^b   Expert, Paul ^b   Turkheimer, Federico E ^b   Bertoldo, Alessandra ^a  

^a UNIVERSITY OF PADOVA   (Italy)

^b KING'S COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DOPAMINE RECEPTOR; MESSENGER RNA; MYELIN; SEROTONIN RECEPTOR; TRANSCRIPTOME; DOPAMINE; SEROTONIN;

ALLEN HUMAN BRAIN DATABASE; ARTICLE; BRAIN MAPPING; CHEMICAL STRUCTURE; COMPUTER PROGRAM; DATA BASE; GENE EXPRESSION; GENE MAPPING; GENOMICS; HUMAN; NEUROIMAGING; NUCLEAR MAGNETIC RESONANCE IMAGING; PHOTON EMISSION TOMOGRAPHY; GENETIC DATABASE; GENETICS; IMAGE PROCESSING; METABOLISM; POSITRON EMISSION TOMOGRAPHY; PROCEDURES; SOFTWARE;

BRAIN MAPPING; DATABASES, GENETIC; DOPAMINE; GENOMICS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; NEUROIMAGING; POSITRON-EMISSION TOMOGRAPHY; RNA, MESSENGER; SEROTONIN; SOFTWARE; TRANSCRIPTOME;

EID: 84978698581     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0148744     Document Type: Article

References (19)

1. Hawrylycz MJ, Lein S, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, et al. An anatomically comprehensive atlas of the adult human brain transcriptome. Nature. 2012; 489(7416):391-9. doi: 10.1038/ nature11405 PMID: 22996553
2. Rizzo G, Veronese M, Heckemann RA, Selvaraj S, Howes OD, Hammers A, et al. The predictive power of brain mRNA mappings for in vivo protein density: a positron emission tomography correlation study. J Cereb Blood Flow Metab; 2014 May 1; 34(5):827-35. doi: 10.1038/jcbfm.2014.21 PMID: 24496175
3. Rizzo G, Veronese M, Heckemann RA, Selvaraj S, Howes OD, Hammers A, et al. Multimodal genomic-PET study: linking brain mRNA mappings and in vivo protein density. 20th annual meeting of Organization For Human Brain Mapping-OHBM 2014. Hamburg (Germany); 2014.
4. Zanotti-Fregonara P, Leroy C, Rizzo G, Roumenov D, Trichard C, Martinot JL, et al. Imaging of monoamine oxidase-A in the human brain with [11C]befloxatone: quantification strategies and correlation with mRNA transcription maps. Nucl Med Commun. 2014/09/05 ed. 2014; 35(12):1254-61. doi: 10. 1097/MNM.0000000000000196 PMID: 25185897
5. Veronese M, Bodini B, Garcia-Lorenzo D, Battaglini M, Bongarzone S, Comtat C, et al. Quantification of [C]PIB PET for imaging myelin in the human brain: a test-retest reproducibility study in high-resolution research tomography. J Cereb Blood Flow Metab. November 2015; 35(11)1771-1782. doi: 10. 1038/jcbfm.2015.120 PMID: 26058700
6. Guo Y, Xiao P, Lei S, Deng F, Xiao GG, Liu Y, et al. How is mRNA expression predictive for protein expression? A correlation study on human circulating monocytes. Acta Biochim Biophys Sin (Shanghai). 2008; 40(5):426-36.
7. Maier T, Güell M, Serrano L. Correlation of mRNA and protein in complex biological samples. FEBS Lett. 2009; 583(24):3966-73. doi: 10.1016/j.febslet.2009.10.036 PMID: 19850042
8. Zanotti-Fregonara P, Xu R, Liow J-S, Veronese M, Gladding R, Rallis-Frutos D, et al. The positron emission tomographic radioligand 18F-FIMX images and quantifies metabotropic glutamate receptor 1 in proportion to the regional density of its gene transcript in human brain. J Nucl Med. 2015; [Epub ahead of print]
9. French L, Paus T. A FreeSurfer view of the cortical transcriptome generated from the Allen Human Brain Atlas. Frontiers in Neuroscience. 2015. Available: http://www.frontiersin.org/Journal/FullText. aspx?s=750&name=neurogenomics&ART-DOI=10.3389/fnins.2015.00323. [Epub ahead of print]
10. Grabner G, Janke A, Budge M, Smith D, Pruessner J, Collins DL. Symmetric Atlasing and Model Based Segmentation: An Application to the Hippocampus in Older Adults. In: Larsen R, Nielsen M, Sporring J, editors. Medical Image Computing and Computer-Assisted Intervention-MICCAI 2006. Springer Berlin Heidelberg; 2006. p. 58-66.
11. Altman DG. Practical statistics for medical research. London: Chapman and Hall; 1991.
12. Garcia-Gomez FJ, Garcia-Solis D, Luis-Simon FJ, Marin-Oyaga VA, Carrillo F, Mir P, et al. [Elaboration of the SPM template for the standardization of SPECT images with 123I-Ioflupane]. Rev Esp Med Nucl Imagen Mol. 2013/04/11 ed. 2013; 32(6):350-6. doi: 10.1016/j.remn.2013.02.009 PMID: 23570700
13. Grecchi E, Doyle OM, Bertoldo A, Pavese N, Turkheimer FE. Brain shaving: adaptive detection for brain PET data. Phys Med Biol. 2014; 59(10):2517. doi: 10.1088/0031-9155/59/10/2517 PMID: 24778363
14. Neeb H, Ermer V, Stocker T, Shah NJ. Fast quantitative mapping of absolute water content with full brain coverage. Neuroimage. 2008/07/18 ed. 2008; 42(3):1094-109. doi: 10.1016/j.neuroimage.2008. 03.060 PMID: 18632287
15. Neeb H, Schenk J, Weber B. Multicentre absolute myelin water content mapping: Development of a whole brain atlas and application to low-grade multiple sclerosis. NeuroImage Clin [Internet]. 2012; 1 (1):121-30. doi: 10.1016/j.nicl.2012.09.013 PMID: 24179745
16. Tonkova V, Arhelger V, Schenk J, Neeb H. Rapid myelin water content mapping on clinical MR systems. Z Med Phys. 2011/10/25 ed. 2012; 22(2):133-42. doi: 10.1016/j.zemedi.2011.09.005 PMID: 22019512
17. Vaughan RA, Foster JD. Mechanisms of dopamine transporter regulation in normal and disease states. Trends Pharmacol Sci. Elsevier; 2013; 34(9):489-96. doi: 10.1016/j.tips.2013.07.005 PMID: 23968642
18. Cheng MH, Block E, Hu F, Cobanoglu MC, Sorkin A, Bahar I. Insights into the modulation of dopamine transporter function by amphetamine, orphenadrine and cocaine binding. Front Neurol. 2015; 6.
19. Burns CM, Chu H, Rueter SM, Hutchinson LK, Canton H, Sanders-Bush E, et al. Regulation of serotonin-2C receptor G-protein coupling by RNA editing. Nature. 1997/05/15 ed. 1997; 387(6630):303-8. PMID: 9153397