Modelling the interaction between bacteriophages and their bacterial hosts

Mathematical Biosciences

Volumn 279, Issue , 2016, Pages 27-32

  Beke, Gabor ^a   Stano, Matej ^a   Klucar, Lubos ^a  

^a INSTITUTE OF CHEMISTRY   (Slovakia)

Author keywords

Bacteria; Bacteriophage; Model; Phage therapy

Indexed keywords

BACTERIA; MATHEMATICAL TECHNIQUES; MODELS; STATISTICS;

ENVIRONMENTAL FACTORS; INTERACTIVE WEBSITE; PHAGE THERAPY; SPECIFIC GROWTH RATE; WEB SIMULATION;

BACTERIOPHAGES;

BACTERIOPHAGE; BACTERIUM; ENVIRONMENTAL FACTOR; GROWTH RATE; NUMERICAL MODEL; PH; TEMPERATURE EFFECT;

BACTERIOPHAGE; ENVIRONMENTAL FACTOR; GROWTH RATE; STATISTICAL MODEL; BACTERIAL PHENOMENA AND FUNCTIONS; BACTERIUM; THEORETICAL MODEL;

BACTERIA (MICROORGANISMS);

BACTERIA; BACTERIAL PHYSIOLOGICAL PHENOMENA; BACTERIOPHAGES; MODELS, THEORETICAL;

EID: 84978224364     PISSN: 00255564     EISSN: 18793134     Source Type: Journal    
DOI: 10.1016/j.mbs.2016.06.009     Document Type: Article

References (37)

1. [1] Sulakvelidze, A., Barrow, P., Phage therapy in animals and agribusiness. Kutter, E., Sulakvelidze, A., (eds.) Bacteriophages: biology and applications, 2005, CRC Press, Boca Raton, Florida, 335–380.
2. [2] Bergh, Ø., BØrsheim, K.Y., Bratbak, G., Heldal, M., High abundance of viruses found in aquatic environments. Nature 340:6233 (1989), 467–468.
3. [3] Milch, H., Phage typing of Escherichia coli. Bergan, T., Norris, J.R., (eds.) Methods of Microbiology, Volume, 11, 1978, Academic Press, London, 123–155 pp. 87–122, 122a, 122b.
4. [4] Scarpino, P.V., Bacteriophage indicators. Berg, G., (eds.), 1978, Ann Arbor Science, Ann Arbor, Michigan, 201–227.
5. [5] Keen, E.C., Phage therapy: concept to cure. Front. Microbiol. 3 (2012), 1–3.
6. [6] Lu, T.K., Koeris, M.S., The next generation of bacteriophage therapy. Curr. Opin. Microbiol. 14:5 (2011), 524–531.
7. [7] Beretta, E., Kuang, Y., Modeling and analysis of a marine bacteriophage infection. Math. Biosci. 149 (1998), 57–76.
8. [8] Middelboe, M., Bacterial growth rate and marine virus–host dynamics. Microbiol. Ecol. 40:2 (2000), 114–124.
9. [9] Middelboe, M., Hagström, A., Blackburn, N., Sinn, B., Fischer, U., Borch, N.H., Lorenz, M.G., Effects of bacteriophages on the population dynamics of four strains of pelagic marine bacteria. Microbiol. Ecol. 42:3 (2001), 395–406.
10. [10] Ashelford, K.E., Day, M.J., Bailey, M.J., Lilley, A.K., Fry, J.C., In situ population dynamics of bacterial viruses in a terrestrial environment. Appl. Environ. Microbiol. 65 (1998), 169–174.
11. [11] Ashelford, K.E., Norris, S.J., Fry, J.C., Bailey, M.J., Day, M.J., Seasonal population dynamics and interactions of competing bacteriophage and their host in the rhizosphere. Appl. Environ. Microbiol. 66:10 (2000), 4193–4199.
12. [12] Burroughs, N.J., Marsh, P., Wellington, M.H., Mathematical analysis of growth and interaction dynamics of streptomyces and a bacteriophage in soil. Appl. Environ. Microbiol. 66:9 (2000), 3868–3877.
13. [13] Caldas, M.P., Duncan, K.E., Istock, C.A., Population dynamics of bacteriophage and bacillus subtilis in soil. Ecology 73 (1992), 1888–1902.
14. [14] Lu, Z., Breidt, F., Fleming, H.P., Altermann, E., Klaenhammer, T.R., Isolation and characterization of a lactobacillus plantarum Bacteriophage, ΦJL-1, from a cucumber fermentation. Int. J. Food Microbiol. 2745 (2003), 1–11.
15. [15] Yoon, S.S., Kim, J.W., Breidt, F., Fleming, H.P., Characterization of a lytic lactobacillus plantarum bacteriophage and molecular cloning of a lysin gene in escherichia coli. Int. J. Food Microbiol. 65 (2000), 63–74.
16. [16] Kitano, H., Foundations of Systems Biology. 2001, The MIT Press.
17. [17] Dzeroski, S., Todorovski, L., Equation discovery for systems biology: finding the structure and dynamics of biological networks from time course data. Curr. Opin. Biotechnol. 19:4 (2008), 360–368.
18. [18] Campbell, A.M., Conditions for the existence of Bacteriophage. Evolution 15:2 (1961), 153–165.
19. [19] Levin, B.R., Stewart, F.M., Chao, L., Resource-limited growth, competition, and predation: a model and experimental studies with bacteria and bacteriophage. Am. Nat. 111:977 (1977), 3–24.
20. [20] Levin, B.R., Bull, J.J., Phage therapy revisited: the population biology of a bacterial infection and its treatment with bacteriophage and antibiotics. Am. Nat. 147 (1996), 881–898.
21. [21] Payne, J.H., Jansen, A.A., Understanding bacteriophage therapy as a density dependent kinetic process. J. Theor. Biol. 208 (2000), 37–48.
22. [22] Beretta, E., Kuang, Y., Modeling and analysis of a marine bacteriophage infection with latency period. Nonlinear Anal. Real World Appl. 2 (2001), 35–74.
23. [23] Bull, A.T., Slater, J.H., Microbial interactions and community structure. Bull, A.T., Slater, J.H., (eds.) Microbial Interactions and Communities, I, 1982, Academic Press, London, 13–44.
24. [24] Lenski, R.E., Dynamics of interactions between bacteria and virulent bacteriophage. Marshall, K.C., (eds.) Advances in Microbial Ecology, 10, 1988, Plenum Publishing Corporation, New York, 1–20.
25. [25] Schrag, S.J., Mittler, J.E., Host-parasite coexistence: the role of spatial refuges in stabilizing bacteria-phage interactions. Am. Nat. 148:2 (1996), 348–377.
26. [26] Rosso, L., Lobry, J.R., Bajard, S., Flandrois, J.P., Convenient model to describe the combined effects of temperature and pH on microbial growth. App. Environ. Microbiol., 61(2), 1995, 610.
27. [27] Bohannan, B.J.M., Lenski, R.E., Effect of resource enrichment on a chemostat community of bacteria and bacteriophage. Ecology 78 (1997), 2303–2315.
28. [28] Bohannan, B.J.M., Lenski, R.E., Linking genetic change to community evolution: insights from studies of bacteria and bacteriophage. Ecol. Lett. 3 (2000), 362–377.
29. [29] Vasi, F.Travisano, Lenski, M., E., R., Long-term experimental evolution in Escherichia coli. II. Changes in Life-History traits during adaptation to a seasonal environment. Am. Nat. 144:3 (1994), 432–456.
30. [30] Zwietering, M.H., De Wit, J.C., Notermans, S., Application of predictive microbiology to estimate the number of Bacillus cereus in pasteurised milk at the point of consumption. Int. J. Food Microbiol. 30:1 (1996), 55–70.
31. [31] Jończyk, E., Kłak, M., Międzybrodzki, R., Górski, A., The influence of external factors on bacteriophages–review. Folia Microbiol. (Praha) 56:3 (2011), 191–200.
32. [32] Ly-Chatain, M.H., The factors affecting effectiveness of treatment in phages therapy. Front Microbiol., 5, 2014, 51.
33. [33] Sanders, M.E., Klaenhammer, T.R., Phage resistance in a phage-insensitive strain of Streptococcus lactis: temperature-dependent phage development and host-controlled phage replication. Appl. Environ. Microbiol. 47:5 (1984), 979–985.
34. [34] Moldovan, R., Chapman-McQuiston, E., Wu, X.L., On kinetics of phage adsorption. Biophys. J. 93:1 (2007), 303–315.
35. [35] Kim, J.W., Kathariou, S., Temperature-dependent phage resistance of Listeria monocytogenes epidemic clone II. Appl. Environ. Microbiol. 75:8 (2009), 2433–2438.
36. [36] García, P., Madera, C., Martínez, B., Rodríguez, A., Biocontrol of Staphylococcus aureus in curd manufacturing processes using bacteriophages. Int. Dairy J. 17:10 (2007), 1232–1239.
37. [37] Ditlevsen, S., Samson, A., Introduction to stochastic models in biology. Bachar, M., Batzel, J., Ditlevsen, S., (eds.) Stochastic biomathematical models, 2013, Springer, Berlin, 3–35.