-
1
-
-
38549118463
-
The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes
-
Sprague J, Bayraktaroglu L, Bradford Y, Conlin T, Dunn N, Fashena D, Frazer K, Haendel M, Howe DG, Knight J, Mani P, Moxon SA, Pich C, Ramachandran S, Schaper K, Segerdell E, Shao X, Singer A, Song P, Sprunger B, Van Slyke CE, Westerfield M: The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes. Nucleic Acids Res. 2008, 36 (Database issue): D768-D772.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.DATABASE ISSUE
, pp. D768-D772
-
-
Sprague, J.1
Bayraktaroglu, L.2
Bradford, Y.3
Conlin, T.4
Dunn, N.5
Fashena, D.6
Frazer, K.7
Haendel, M.8
Howe, D.G.9
Knight, J.10
Mani, P.11
Moxon, S.A.12
Pich, C.13
Ramachandran, S.14
Schaper, K.15
Segerdell, E.16
Shao, X.17
Singer, A.18
Song, P.19
Sprunger, B.20
Van Slyke, C.E.21
Westerfield, M.22
more..
-
2
-
-
84876580870
-
The mouse genome database: genotypes, phenotypes, and models of human disease
-
Bult CJ, Eppig JT, Blake JA, Kadin JA, Richardson JE, Airey MT, Anagnostopoulos A, Babiuk R, Baldarelli RM, Beal JS, Bello SM, Butler NE, Campbell J, Corbani LE, Dene H, Drabkin HR, Forthofer KL, Giannatto SL, Knowlton M, Lewis JR, McAndrews M, McClatchy S, Miers DS, Ni L, Onda H, Ormsby JE, Recla JM, Reed DJ, Richards-Smith B, Shaw DR, et al: The mouse genome database: genotypes, phenotypes, and models of human disease. Nucleic Acids Res. 2013, 41 (Database issue): D885-D891.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.DATABASE ISSUE
, pp. D885-D891
-
-
Bult, C.J.1
Eppig, J.T.2
Blake, J.A.3
Kadin, J.A.4
Richardson, J.E.5
Airey, M.T.6
Anagnostopoulos, A.7
Babiuk, R.8
Baldarelli, R.M.9
Beal, J.S.10
Bello, S.M.11
Butler, N.E.12
Campbell, J.13
Corbani, L.E.14
Dene, H.15
Drabkin, H.R.16
Forthofer, K.L.17
Giannatto, S.L.18
Knowlton, M.19
Lewis, J.R.20
McAndrews, M.21
McClatchy, S.22
Miers, D.S.23
Ni, L.24
Onda, H.25
Ormsby, J.E.26
Recla, J.M.27
Reed, D.J.28
Richards-Smith, B.29
Shaw, D.R.30
more..
-
3
-
-
33644873681
-
FlyBase: anatomical data, images and queries
-
Grumbling G, Strelets V: FlyBase: anatomical data, images and queries. Nucleic Acids Res. 2006, 34 (Database issue): D484-D488.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.DATABASE ISSUE
, pp. D484-D488
-
-
Grumbling, G.1
Strelets, V.2
-
4
-
-
75549087626
-
Saccharomyces Genome Database provides mutant phenotype data
-
Engel SR, Balakrishnan R, Binkley G, Christie KR, Costanzo MC, Dwight SS, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Krieger CJ, Livstone MS, Miyasato SR, Nash R, Oughtred R, Park J, Skrzypek MS, Weng S, Wong ED, Dolinski K, Botstein D, Cherry JM: Saccharomyces Genome Database provides mutant phenotype data. Nucleic Acids Res. 2010, 38 (Database issue): D433-D436.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.DATABASE ISSUE
, pp. D433-D436
-
-
Engel, S.R.1
Balakrishnan, R.2
Binkley, G.3
Christie, K.R.4
Costanzo, M.C.5
Dwight, S.S.6
Fisk, D.G.7
Hirschman, J.E.8
Hitz, B.C.9
Hong, E.L.10
Krieger, C.J.11
Livstone, M.S.12
Miyasato, S.R.13
Nash, R.14
Oughtred, R.15
Park, J.16
Skrzypek, M.S.17
Weng, S.18
Wong, E.D.19
Dolinski, K.20
Botstein, D.21
Cherry, J.M.22
more..
-
5
-
-
84856584543
-
The Virtual Fly Brain browser and query interface
-
Milyaev N, Osumi-Sutherland D, Reeve S, Burton N, Baldock RA, Armstrong JD: The Virtual Fly Brain browser and query interface. Bioinformatics. 2012, 28 (3): 411-415. 10.1093/bioinformatics/btr677.
-
(2012)
Bioinformatics
, vol.28
, Issue.3
, pp. 411-415
-
-
Milyaev, N.1
Osumi-Sutherland, D.2
Reeve, S.3
Burton, N.4
Baldock, R.A.5
Armstrong, J.D.6
-
6
-
-
84865149534
-
A strategy for building neuroanatomy ontologies
-
Osumi-Sutherland D, Reeve S, Mungall CJ, Neuhaus F, Ruttenberg A, Jefferis GS, Armstrong JD: A strategy for building neuroanatomy ontologies. Bioinformatics. 2012, 28 (9): 1262-1269. 10.1093/bioinformatics/bts113.
-
(2012)
Bioinformatics
, vol.28
, Issue.9
, pp. 1262-1269
-
-
Osumi-Sutherland, D.1
Reeve, S.2
Mungall, C.J.3
Neuhaus, F.4
Ruttenberg, A.5
Jefferis, G.S.6
Armstrong, J.D.7
-
7
-
-
84978065928
-
OWL 2 Web Ontology Language Primer (Second Edition) - W3C Recommendation 11 December 2012.
-
OWL 2 Web Ontology Language Primer (Second Edition) - W3C Recommendation 11 December 2012. [ http://www.w3.org/TR/owl2-primer/ ]
-
-
-
-
8
-
-
84978125954
-
OWL 2 EL profile - W3C Recommendation 11 December 2012.
-
OWL 2 EL profile - W3C Recommendation 11 December 2012. [ http://www.w3.org/TR/owl2-profiles/#OWL_2_EL ]
-
-
-
-
9
-
-
84892600591
-
ELK reasoner: Architecture and evaluation. (From Proceedings of the 1st International OWL Reasoner Evaluation Workshop)
-
Kazakov Y, Krötzsch M, Simančík F: ELK reasoner: Architecture and evaluation. (From Proceedings of the 1st International OWL Reasoner Evaluation Workshop). CEUR Workshop Proc. 2012, 858: 10-
-
(2012)
CEUR Workshop Proc
, vol.858
, pp. 10
-
-
Kazakov, Y.1
Krötzsch, M.2
Simančík, F.3
-
10
-
-
84884662327
-
The OBO to OWL mapping, GO in OWL 1.1! (From Proc. of the third OWL Experiences and directions workshop)
-
Golbreich C, Horrocks I: The OBO to OWL mapping, GO in OWL 1.1! (From Proc. of the third OWL Experiences and directions workshop). CEUR Workshop Proc. 2007, 258: 1-9.
-
(2007)
CEUR Workshop Proc
, vol.258
, pp. 1-9
-
-
Golbreich, C.1
Horrocks, I.2
-
11
-
-
84908353809
-
OBO Flat File Format 1.4 Syntax and Semantics
-
Mungall C, Ruttenberg R, Horrocks I, Osumi-Sutherland D, Antezana E, Balhoff J, Courtot M, Dietze H, Day-Richter J, Horridge H, Ireland A, Lewis S, Manzoor S, Hamid Tirmizi S: OBO Flat File Format 1.4 Syntax and Semantics. [ http://oboformat.googlecode.com/svn/trunk/doc/obo-syntax.html ]
-
-
-
Mungall, C.1
Ruttenberg, R.2
Horrocks, I.3
Osumi-Sutherland, D.4
Antezana, E.5
Balhoff, J.6
Courtot, M.7
Dietze, H.8
Day-Richter, J.9
Horridge, H.10
Ireland, A.11
Lewis, S.12
Manzoor, S.13
Hamid Tirmizi, S.14
-
12
-
-
79952016835
-
Cross-product extensions of the Gene Ontology
-
Mungall CJ, Bada M, Berardini TZ, Deegan J, Ireland A, Harris MA, Hill DP, Lomax J: Cross-product extensions of the Gene Ontology. J Biomed Inform. 2011, 44: 80-86. 10.1016/j.jbi.2010.02.002.
-
(2011)
J Biomed Inform
, vol.44
, pp. 80-86
-
-
Mungall, C.J.1
Bada, M.2
Berardini, T.Z.3
Deegan, J.4
Ireland, A.5
Harris, M.A.6
Hill, D.P.7
Lomax, J.8
-
13
-
-
77958120670
-
Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development
-
Deegan nee Clark JI, Dimmer EC, Mungall CJ: Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development. BMC Bioinformatics. 2010, 11: 530-10.1186/1471-2105-11-530.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 530
-
-
Deegan Nee Clark, J.I.1
Dimmer, E.C.2
Mungall, C.J.3
-
14
-
-
84888392037
-
Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes
-
Gkoutos GV, Hoehndorf R: Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes. J Biomed Semantics. 2012, 3 (Suppl 2): S6-10.1186/2041-1480-3-S2-S6.
-
(2012)
J Biomed Semantics
, vol.3
, pp. S6
-
-
Gkoutos, G.V.1
Hoehndorf, R.2
-
15
-
-
77951018428
-
Entity/quality-based logical definitions for the human skeletal phenome using PATO
-
Gkoutos GV, Mungall C, Dolken S, Ashburner M, Lewis S, Hancock J, Schofield P, Kohler S, Robinson PN: Entity/quality-based logical definitions for the human skeletal phenome using PATO. Conf Proc IEEE Eng Med Biol Soc. 2009, 2009: 7069-7072.
-
(2009)
Conf Proc IEEE Eng Med Biol Soc
, vol.2009
, pp. 7069-7072
-
-
Gkoutos, G.V.1
Mungall, C.2
Dolken, S.3
Ashburner, M.4
Lewis, S.5
Hancock, J.6
Schofield, P.7
Kohler, S.8
Robinson, P.N.9
-
16
-
-
13444283370
-
Ontologies for the description of mouse phenotypes
-
Gkoutos GV, Green EC, Mallon AM, Blake A, Greenaway S, Hancock JM, Davidson D: Ontologies for the description of mouse phenotypes. Comp Funct Genomics. 2004, 5 (6-7): 545-551.
-
(2004)
Comp Funct Genomics
, vol.5
, Issue.6-7
, pp. 545-551
-
-
Gkoutos, G.V.1
Green, E.C.2
Mallon, A.M.3
Blake, A.4
Greenaway, S.5
Hancock, J.M.6
Davidson, D.7
-
17
-
-
78650789238
-
Logical development of the cell ontology
-
Meehan TF, Masci AM, Abdulla A, Cowell LG, Blake JA, Mungall CJ, Diehl AD: Logical development of the cell ontology. BMC Bioinformatics. 2011, 12: 6-10.1186/1471-2105-12-6.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 6
-
-
Meehan, T.F.1
Masci, A.M.2
Abdulla, A.3
Cowell, L.G.4
Blake, J.A.5
Mungall, C.J.6
Diehl, A.D.7
-
18
-
-
84856316836
-
Uberon, an integrative multi-species anatomy ontology
-
Mungall CJ, Torniai C, Gkoutos GV, Lewis SE, Haendel MA: Uberon, an integrative multi-species anatomy ontology. Genome Biol. 2012, 13: R5-10.1186/gb-2012-13-1-r5.
-
(2012)
Genome Biol
, vol.13
, pp. R5
-
-
Mungall, C.J.1
Torniai, C.2
Gkoutos, G.V.3
Lewis, S.E.4
Haendel, M.A.5
-
19
-
-
84947570401
-
Modularisation of domain ontologies implemented in description logics and related formalisms including OWL.
-
New York: ACM
-
Rector AL: Modularisation of domain ontologies implemented in description logics and related formalisms including OWL. Proceedings of the 2nd International Conference on Knowledge Capture. 2003, New York: ACM, 121-128. [ http://doi.acm.org/10.1145/945645.945664 ]
-
(2003)
Proceedings of the 2nd International Conference on Knowledge Capture.
, pp. 121-128
-
-
Rector, A.L.1
-
20
-
-
0001063013
-
The morphology and development of the Drosophila muscular system.
-
Edited by: Ashburner M, Wright TRF. 1980, London: Academic Press
-
Crossley AC: The morphology and development of the Drosophila muscular system. The Genetics and Biology of Drosophila, Volume 2d. Edited by: Ashburner M, Wright TRF. 1980, London: Academic Press, 499-560.
-
The Genetics and Biology of Drosophila
, vol.2D
, pp. 499-560
-
-
Crossley, A.C.1
-
21
-
-
0001568287
-
The mesoderm and its derivatives.
-
Edited by: Bate M, Martinez Arias A. 1993, Cold Spring Harbor: Cold Spring Harbor Laboratory Press
-
Bate M: The mesoderm and its derivatives. In The development of Drosophila melanogaster. The development of Drosophila melanogaster, Volume 2. Edited by: Bate M, Martinez Arias A. 1993, Cold Spring Harbor: Cold Spring Harbor Laboratory Press, 1013-1090.
-
In The development of Drosophila melanogaster. The development of Drosophila melanogaster
, vol.2
, pp. 1013-1090
-
-
Bate, M.1
-
22
-
-
44149103892
-
CARO-the common anatomy reference ontology. (in Anatomy Ontologies for Bioinformatics)
-
Haendel MA, Neuhaus F, Osumi-Sutherland D, Mabee PM, Mejino JL, Mungall CJ, Smith B: CARO-the common anatomy reference ontology. (in Anatomy Ontologies for Bioinformatics). Comput Biol. 2008, 6: 327-349. 10.1007/978-1-84628-885-2_16. Edited by Burger A, Davidson D, Baldock, R. Springer
-
(2008)
Comput Biol
, vol.6
, pp. 327-349
-
-
Haendel, M.A.1
Neuhaus, F.2
Osumi-Sutherland, D.3
Mabee, P.M.4
Mejino, J.L.5
Mungall, C.J.6
Smith, B.7
-
23
-
-
79151480913
-
Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution
-
Chiang AS, Lin CY, Chuang CC, Chang HM, Hsieh CH, Yeh CW, Shih CT, Wu JJ, Wang GT, Chen YC, Wu CC, Chen GY, Ching YT, Lee PC, Lin CY, Lin HH, Wu CC, Hsu HW, Huang YA, Chen JY, Chiang HJ, Lu CF, Ni RF, Yeh CY, Hwang JK: Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution. Curr Biol. 2011, 21: 1-11.
-
(2011)
Curr Biol
, vol.21
, pp. 1-11
-
-
Chiang, A.S.1
Lin, C.Y.2
Chuang, C.C.3
Chang, H.M.4
Hsieh, C.H.5
Yeh, C.W.6
Shih, C.T.7
Wu, J.J.8
Wang, G.T.9
Chen, Y.C.10
Wu, C.C.11
Chen, G.Y.12
Ching, Y.T.13
Lee, P.C.14
Lin, C.Y.15
Lin, H.H.16
Wu, C.C.17
Hsu, H.W.18
Huang, Y.A.19
Chen, J.Y.20
Chiang, H.J.21
Lu, C.F.22
Ni, R.F.23
Yeh, C.Y.24
Hwang, J.K.25
more..
-
24
-
-
78651335916
-
REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila
-
Gallo SM, Gerrard DT, Miner D, Simich M, Des Soye B, Bergman CM, Halfon MS: REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila. Nucleic Acids Res. 2011, 39 (Database issue): D118-D123.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.DATABASE ISSUE
, pp. D118-D123
-
-
Gallo, S.M.1
Gerrard, D.T.2
Miner, D.3
Simich, M.4
Des Soye, B.5
Bergman, C.M.6
Halfon, M.S.7
-
25
-
-
84874105496
-
Populous: a tool for building OWL ontologies from templates
-
Jupp S, Horridge M, Iannone L, Klein J, Owen S, Schanstra J, Wolstencroft K, Stevens R: Populous: a tool for building OWL ontologies from templates. BMC Bioinformatics. 2012, 13 (Suppl 1): S5-
-
(2012)
BMC Bioinformatics
, vol.13
, pp. S5
-
-
Jupp, S.1
Horridge, M.2
Iannone, L.3
Klein, J.4
Owen, S.5
Schanstra, J.6
Wolstencroft, K.7
Stevens, R.8
-
26
-
-
56649118846
-
Applying ontology design patterns in bio-ontologies
-
Egaña M, Rector A, Stevens R, Antezana E: Applying ontology design patterns in bio-ontologies. LNCS. 2008, 5268: 7-16.
-
(2008)
LNCS
, vol.5268
, pp. 7-16
-
-
Egaña, M.1
Rector, A.2
Stevens, R.3
Antezana, E.4
-
27
-
-
0012257635
-
Evaluating ontological decisions with OntoClean
-
Guarino N, Welty C: Evaluating ontological decisions with OntoClean. Commun ACM. 2002, 45 (2): 61-65.
-
(2002)
Commun ACM
, vol.45
, Issue.2
, pp. 61-65
-
-
Guarino, N.1
Welty, C.2
|