메뉴 건너뛰기




Volumn 44, Issue D1, 2016, Pages D595-D603

EBI metagenomics in 2016 - An expanding and evolving resource for the analysis and archiving of metagenomic data

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOME; DATA ANALYSIS SOFTWARE; INFORMATION PROCESSING; INFORMATION STORAGE; INTERNET; METAGENOME; METAGENOMICS; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TRANSCRIPTOMICS; GENE EXPRESSION PROFILING; NUCLEIC ACID DATABASE; SEA; SOFTWARE;

EID: 84976905126     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv1195     Document Type: Article
Times cited : (79)

References (31)
  • 1
    • 0002842298 scopus 로고
    • The analysis of natural microbial populations by ribosomal RNA sequences
    • Marshall, K ed, Springer, Boston, MA
    • Pace, N. R., Stahl, D. A., Lane, D. J. and Olsen, G. J. (1986) The analysis of natural microbial populations by ribosomal RNA sequences. In: Marshall, K (ed). Advances in Microbial Ecology. Springer, Boston, MA, Vol. 9, pp. 1-55.
    • (1986) Advances in Microbial Ecology , vol.9 , pp. 1-55
    • Pace, N.R.1    Stahl, D.A.2    Lane, D.J.3    Olsen, G.J.4
  • 3
    • 0025860931 scopus 로고
    • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
    • Schmidt, T. M., DeLong, E. F. and Pace, N. R. (1991) Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J. Bacteriol., 173, 4371-4378.
    • (1991) J. Bacteriol. , vol.173 , pp. 4371-4378
    • Schmidt, T.M.1    De Long, E.F.2    Pace, N.R.3
  • 4
    • 0032192790 scopus 로고    scopus 로고
    • Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products
    • Handelsman, J., Rondon, M. R., Brady, S. F., Clardy, J. and Goodman, R. M. (1998) Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chem. Biol., 5, R245-R249.
    • (1998) Chem. Biol. , vol.5 , pp. R245-R249
    • Handelsman, J.1    Rondon, M.R.2    Brady, S.F.3    Clardy, J.4    Goodman, R.M.5
  • 6
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Human Microbiome Project Consortium. (2012) Structure, function and diversity of the healthy human microbiome. Nature, 486, 207-214.
    • (2012) Nature , vol.486 , pp. 207-214
    • Human Microbiome Project Consortium1
  • 7
    • 84887301559 scopus 로고    scopus 로고
    • Reconstructing the microbial diversity and function of pre-Agricultural tallgrass prairie soils in the United States
    • Fierer, N., Ladau, J., Clemente, J. C., Leff, J. W., Owens, S. M., Pollard, K. S., Knight, R., Gilbert, J. A. and McCulley, R. L. (2013) Reconstructing the microbial diversity and function of pre-Agricultural tallgrass prairie soils in the United States. Science, 342, 621-624.
    • (2013) Science , vol.342 , pp. 621-624
    • Fierer, N.1    Ladau, J.2    Clemente, J.C.3    Leff, J.W.4    Owens, S.M.5    Pollard, K.S.6    Knight, R.7    Gilbert, J.A.8    McCulley, R.L.9
  • 8
    • 84896817228 scopus 로고    scopus 로고
    • Comparative metagenomic analysis of bacterial populations in three full-scale mesophilic anaerobic manure digesters
    • St-Pierre, B. and Wright, A.-D. G. (2014) Comparative metagenomic analysis of bacterial populations in three full-scale mesophilic anaerobic manure digesters. Appl. Microbiol. Biotechnol., 98, 2709-2717.
    • (2014) Appl. Microbiol. Biotechnol. , vol.98 , pp. 2709-2717
    • St-Pierre, B.1    Wright, A.-D.G.2
  • 11
    • 84878245057 scopus 로고    scopus 로고
    • From soil to structure, a novel dimeric β-glucosidase belonging to glycoside hydrolase family 3 isolated from compost using metagenomic analysis
    • McAndrew, R. P., Park, J. I., Heins, R. A., Reindl, W., Friedland, G. D., D'haeseleer, P., Northen, T., Sale, K. L., Simmons, B. A. and Adams, P. D. (2013) From soil to structure, a novel dimeric β-glucosidase belonging to glycoside hydrolase family 3 isolated from compost using metagenomic analysis. J. Biol. Chem., 288, 14985-14992.
    • (2013) J. Biol. Chem. , vol.288 , pp. 14985-14992
    • McAndrew, R.P.1    Park, J.I.2    Heins, R.A.3    Reindl, W.4    Friedland, G.D.5    D'Haeseleer, P.6    Northen, T.7    Sale, K.L.8    Simmons, B.A.9    Adams, P.D.10
  • 12
    • 84907781883 scopus 로고    scopus 로고
    • Metagenomic approach reveals variation of microbes with arsenic and antimony metabolism genes from highly contaminated soil
    • Luo, J., Bai, Y., Liang, J. and Qu, J. (2014) Metagenomic approach reveals variation of microbes with arsenic and antimony metabolism genes from highly contaminated soil. PLoS One, 9, e108185.
    • (2014) PLoS One , vol.9 , pp. e108185
    • Luo, J.1    Bai, Y.2    Liang, J.3    Qu, J.4
  • 13
  • 14
    • 84896739700 scopus 로고    scopus 로고
    • Characterization of the core rumen microbiome in cattle during transition from forage to concentrate as well as during and after an acidotic challenge
    • Petri, R. M., Schwaiger, T., Penner, G. B., Beauchemin, K. A., Forster, R. J., McKinnon, J. J. and McAllister, T. A. (2013) Characterization of the core rumen microbiome in cattle during transition from forage to concentrate as well as during and after an acidotic challenge. PLoS One, 8, e83424.
    • (2013) PLoS One , vol.8 , pp. e83424
    • Petri, R.M.1    Schwaiger, T.2    Penner, G.B.3    Beauchemin, K.A.4    Forster, R.J.5    McKinnon, J.J.6    McAllister, T.A.7
  • 15
    • 81155128154 scopus 로고    scopus 로고
    • Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment
    • Danzeisen, J. L., Kim, H. B., Isaacson, R. E., Tu, Z. J. and Johnson, T. J. (2011) Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment. PLoS One, 6, e27949.
    • (2011) PLoS One , vol.6 , pp. e27949
    • Danzeisen, J.L.1    Kim, H.B.2    Isaacson, R.E.3    Tu, Z.J.4    Johnson, T.J.5
  • 16
    • 84864444221 scopus 로고    scopus 로고
    • Comparison of the fecal microbiota of healthy horses and horses with colitis by high throughput sequencing of the V3-V5 region of the 16S rRNA gene
    • Costa, M. C., Arroyo, L. G., Allen-Vercoe, E., Stämpfli, H. R., Kim, P. T., Sturgeon, A. and Weese, J. S. (2012) Comparison of the fecal microbiota of healthy horses and horses with colitis by high throughput sequencing of the V3-V5 region of the 16S rRNA gene. PLoS One, 7, e41484.
    • (2012) PLoS One , vol.7 , pp. e41484
    • Costa, M.C.1    Arroyo, L.G.2    Allen-Vercoe, E.3    Stämpfli, H.R.4    Kim, P.T.5    Sturgeon, A.6    Weese, J.S.7
  • 17
    • 84891783174 scopus 로고    scopus 로고
    • Activities at the universal protein resource (uniprot)
    • UniProt Consortium. (2014) Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res., 42, D191-D198.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D191-D198
    • UniProt Consortium1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.