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Volumn 44, Issue D1, 2016, Pages D343-D350

Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDASE; PEPTIDE HYDROLASE INHIBITOR; PEPTIDE HYDROLASE; PROTEINASE INHIBITOR;

EID: 84976878698     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv1118     Document Type: Article
Times cited : (572)

References (27)
  • 1
    • 0027479821 scopus 로고
    • Evolutionary families of peptidases
    • Rawlings, N. D. and Barrett, A. J. (1993) Evolutionary families of peptidases. Biochem. J., 290, 205-218.
    • (1993) Biochem. J. , vol.290 , pp. 205-218
    • Rawlings, N.D.1    Barrett, A.J.2
  • 2
    • 1642464622 scopus 로고    scopus 로고
    • Evolutionary families of peptidase inhibitors
    • Rawlings, N. D., Tolle, D. P. and Barrett, A. J. (2004) Evolutionary families of peptidase inhibitors. Biochem. J., 378, 705-716.
    • (2004) Biochem. J. , vol.378 , pp. 705-716
    • Rawlings, N.D.1    Tolle, D.P.2    Barrett, A.J.3
  • 3
    • 35848944306 scopus 로고    scopus 로고
    • Species of peptidases
    • Barrett, A. J. and Rawlings, N. D. (2007) 'Species' of peptidases. Biol. Chem., 388, 1151-1157.
    • (2007) Biol. Chem. , vol.388 , pp. 1151-1157
    • Barrett, A.J.1    Rawlings, N.D.2
  • 4
    • 80055070726 scopus 로고    scopus 로고
    • Asparagine peptide lyases: A seventh catalytic type of proteolytic enzymes
    • Rawlings, N. D., Barrett, A. J. and Bateman, A. (2011) Asparagine peptide lyases: a seventh catalytic type of proteolytic enzymes. J. Biol. Chem., 286, 38321-38328.
    • (2011) J. Biol. Chem. , vol.286 , pp. 38321-38328
    • Rawlings, N.D.1    Barrett, A.J.2    Bateman, A.3
  • 5
    • 79951810546 scopus 로고    scopus 로고
    • A large and accurate collection of peptidase cleavages in the MEROPS database
    • Rawlings, N. D. (2009) A large and accurate collection of peptidase cleavages in the MEROPS database. Database (Oxford), bap015.
    • (2009) Database (Oxford) , pp. bap015
    • Rawlings, N.D.1
  • 10
    • 84941086837 scopus 로고    scopus 로고
    • Proteome TopFIND 3.0 with TopFINDer and PathFINDer: Database and analysis tools for the association of protein termini to pre- and post-translational events
    • Fortelny, N., Yang, S., Pavlidis, P., Lange, P. F. and Overall, C. M. (2015) Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events. Nucleic Acids Res., 43, D290-D297.
    • (2015) Nucleic Acids Res. , vol.43 , pp. D290-D297
    • Fortelny, N.1    Yang, S.2    Pavlidis, P.3    Lange, P.F.4    Overall, C.M.5
  • 12
    • 84875908330 scopus 로고    scopus 로고
    • Proteasix: A tool for automated and large-scale prediction of proteases involved in naturally occurring peptide generation
    • Klein, J., Eales, J., Zürbig, P., Vlahou, A., Mischak, H. and Stevens, R. (2013) Proteasix: a tool for automated and large-scale prediction of proteases involved in naturally occurring peptide generation. Proteomics, 13, 1077-1082.
    • (2013) Proteomics , vol.13 , pp. 1077-1082
    • Klein, J.1    Eales, J.2    Zürbig, P.3    Vlahou, A.4    Mischak, H.5    Stevens, R.6
  • 13
    • 84908149050 scopus 로고    scopus 로고
    • Caspase cleavage sites in the human proteome: CaspDB, a database of predicted substrates
    • Kumar, S., van Raam, B., Salvesen, G. S. and Cieplak, P. (2014) Caspase cleavage sites in the human proteome: CaspDB, a database of predicted substrates. PLoS One, 9, e110539.
    • (2014) PLoS One , vol.9 , pp. e110539
    • Kumar, S.1    Van Raam, B.2    Salvesen, G.S.3    Cieplak, P.4
  • 14
    • 84877152347 scopus 로고    scopus 로고
    • MerCASBA: An updated and refined database of caspase substrates
    • Fridman, A., Pak, I., Butts, B. D., Hoek, M., Nicholson, D. W. and Mehmet, H. (2013) MerCASBA: an updated and refined database of caspase substrates. Apoptosis, 18, 369-371.
    • (2013) Apoptosis , vol.18 , pp. 369-371
    • Fridman, A.1    Pak, I.2    Butts, B.D.3    Hoek, M.4    Nicholson, D.W.5    Mehmet, H.6
  • 15
    • 84930662404 scopus 로고    scopus 로고
    • CleavPredict: A platform for reasoning about matrix metalloproteinases proteolytic events
    • Kumar, S., Ratnikov, B. I., Kazanov, M. D., Smith, J. W. and Cieplak, P. (2015) CleavPredict: A Platform for Reasoning about Matrix Metalloproteinases Proteolytic Events. PLoS One, 10, e0127877.
    • (2015) PLoS One , vol.10 , pp. e0127877
    • Kumar, S.1    Ratnikov, B.I.2    Kazanov, M.D.3    Smith, J.W.4    Cieplak, P.5
  • 17
    • 84870484133 scopus 로고    scopus 로고
    • PROSPER: An integrated feature-based tool for predicting protease substrate cleavage sites
    • Song, J., Tan, H., Perry, A. J., Akutsu, T., Webb, G. I., Whisstock, J. C. and Pike, R. N. (2012) PROSPER: an integrated feature-based tool for predicting protease substrate cleavage sites. PLoS One, 7, e50300.
    • (2012) PLoS One , vol.7 , pp. e50300
    • Song, J.1    Tan, H.2    Perry, A.J.3    Akutsu, T.4    Webb, G.I.5    Whisstock, J.C.6    Pike, R.N.7
  • 19
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W. R. and Lipman, D. J. (1988) Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. U. S. A., 85, 2444-2448.
    • (1988) Proc. Natl. Acad. Sci. U. S. A. , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 21
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. and Tanabe, M. (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res., 40, D109-D114.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D109-D114
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 23
    • 84925267288 scopus 로고    scopus 로고
    • UniRef clusters: A comprehensive and scalable alternative for improving sequence similarity searches
    • Suzek, B. E., Wang, Y., Huang, H., McGarvey, P. B., Wu, C. H. and the UniProt Consortium. (2015) UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches. Bioinformatics 31, 926-932.
    • (2015) Bioinformatics , vol.31 , pp. 926-932
    • the UniProt Consortium1    Suzek, B.E.2    Wang, Y.3    Huang, H.4    McGarvey, P.B.5    Wu, C.H.6
  • 24
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 25
    • 0014405092 scopus 로고
    • On the active site of proteases. 3. Mapping the active site of papain; specific peptide inhibitors of papain
    • Schechter, I. and Berger, A. (1968) On the active site of proteases. 3. Mapping the active site of papain; specific peptide inhibitors of papain. Biochem. Biophys. Res. Commun., 32, 898-902.
    • (1968) Biochem. Biophys. Res. Commun. , vol.32 , pp. 898-902
    • Schechter, I.1    Berger, A.2
  • 26
    • 84957439424 scopus 로고    scopus 로고
    • Peptidase specificity from the substrate cleavage collection in the MEROPS database and a tool to measure cleavage site conservation
    • in press
    • Rawlings, N. D. (2016) Peptidase specificity from the substrate cleavage collection in the MEROPS database and a tool to measure cleavage site conservation. Biochimie, in press (DOI: 10.1016/j.biochi.2015.10.003).
    • (2016) Biochimie
    • Rawlings, N.D.1
  • 27
    • 32644446428 scopus 로고    scopus 로고
    • Antiplasmin-cleaving enzyme is a soluble form of fibroblast activation protein
    • Lee, K. N., Jackson, K. W., Christiansen, V. J., Lee, C. S., Chun, J. G. and McKee, P. A. (2006) Antiplasmin-cleaving enzyme is a soluble form of fibroblast activation protein. Blood, 107, 1397-1404.
    • (2006) Blood , vol.107 , pp. 1397-1404
    • Lee, K.N.1    Jackson, K.W.2    Christiansen, V.J.3    Lee, C.S.4    Chun, J.G.5    McKee, P.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.