Microbial interactions lead to rapid micro-scale successions on model marine particles

Nature Communications

Volumn 7, Issue , 2016, Pages

  Datta, Manoshi S ^a   Sliwerska, Elzbieta ^b   Gore, Jeff ^a   Polz, Martin F ^c   Cordero, Otto X ^a,b,c  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b ETH ZURICH   (Switzerland)

^c Massachusetts Institute of Technology Cambridge   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; RNA 16S; SEA WATER;

BACTERIUM; BIODEGRADATION; CARBON; COMMUNITY DYNAMICS; ENZYME ACTIVITY; METABOLISM; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; MOTILITY; PRIMARY SUCCESSION; SPECIES DIVERSITY; SUBSTRATE;

ARTICLE; BACTERIAL COLONIZATION; BACTERIAL METABOLISM; COMMUNITY DYNAMICS; COMMUNITY SUCCESSION; MARINE ENVIRONMENT; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; NONHUMAN; ORGANISMAL INTERACTION; PARTICLE SIZE; TAXON; DNA SEQUENCE; ECOSYSTEM; GENETICS; MICROBIAL CONSORTIUM; MICROBIOLOGY; PHYSIOLOGY; SEDIMENT;

BACTERIA (MICROORGANISMS);

ECOSYSTEM; GEOLOGIC SEDIMENTS; MICROBIAL CONSORTIA; MICROBIAL INTERACTIONS; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; WATER MICROBIOLOGY;

EID: 84975511062     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms11965     Document Type: Article

References (32)

1. Alldredge, A. L. & Silver, M. W. Characteristics, dynamics and significance of marine snow. Prog. Oceanogr. 20, 41-82 (1988).
2. Simon, M., Grossart, H. P., Schweitzer, B. & Ploug, H. Microbial ecology of organic aggregates in aquatic ecosystems. Aquat. Microb. Ecol. 28, 175-211 (2002).
3. Jiao, N. et al. Microbial production of recalcitrant dissolved organic matter: longterm carbon storage in the global ocean. Nat. Rev. Microbiol. 8, 593-599 (2010).
4. Kirchman, D. L. Microbial Ecology of the Oceans (John Wiley & Sons, 2010).
5. Kiørboe, T., Grossart, H.-P., Ploug, H. & Tang, K. Mechanisms and rates of bacterial colonization of sinking aggregates. Appl. Environ. Microbiol. 68, 3996-4006 (2002).
6. Grossart, H.-P., Kiørboe, T., Tang, K. & Ploug, H. Bacterial colonization of particles: growth and interactions. Appl. Environ. Microbiol. 69, 3500-3509 (2003).
7. Cordero, O. X., Ventouras, L.-A., DeLong, E. F. & Polz, M. F. Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations. Proc. Natl Acad. Sci 109, 20059-20064 (2012).
8. Smith, D. C., Simon, M., Alldredge, A. L. & Azam, F. Intense hydrolytic enzyme activity on marine aggregates and implications for rapid particle dissolution. Nature 359, 139-142 (1992).
9. Long, R. A. & Azam, F. Antagonistic interactions among marine pelagic bacteria. Appl. Environ. Microbiol. 67, 4975-4983 (2001).
10. Gram, L., Grossart, H.-P., Schlingloff, A. & Kiørboe, T. Possible quorum sensing in marine snow bacteria: production of acylated homoserine lactones by Roseobacter strains isolated from marine snow. Appl. Environ. Microbiol. 68, 4111-4116 (2002).
11. Hmelo, L. R., Mincer, T. J. & Van Mooy, B. A. S. Possible influence of bacterial quorum sensing on the hydrolysis of sinking particulate organic carbon in marine environments. Environ. Microbiol. Rep. 3, 682-688 (2011).
12. Stocker, R. & Seymour, J. R. Ecology and physics of bacterial chemotaxis in the ocean. Microbiol. Mol. Biol. Rev. 76, 792-812 (2012).
13. Yawata, Y. et al. Competition-dispersal tradeoff ecologically differentiates recently speciated marine bacterioplankton populations. Proc. Natl Acad. Sci. USA 111, 5622-5627 (2014).
14. Peay, K. G., Garbelotto, M. & Bruns, T. D. Evidence of dispersal limitation in soil microorganisms: Isolation reduces species richness on mycorrhizal tree islands. Ecology 91, 3631-3640 (2010).
15. Adams, R. I., Miletto, M., Taylor, J. W. & Bruns, T. D. Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances. ISME J. 7, 1262-1273 (2013).
16. Ferrenberg, S. et al. Changes in assembly processes in soil bacterial communities following a wildfire disturbance. ISME J. 7, 1102-1111 (2013).
17. Stegen, J. C., Lin, X., Fredrickson, J. K. & Konopka, A. E. Estimating and mapping ecological processes influencing microbial community assembly. Front. Microbiol. 6, 370 (2015).
18. Dini-Andreote, F., Stegen, J. C., van Elsas, J. D. & Salles, J. F. Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession. Proc. Natl Acad. Sci. 112, E1326-E1332 (2015).
19. Beier, S. & Bertilsson, S. Bacterial chitin degradation-mechanisms and ecophysiological strategies. Front. Microbiol. 4, 149-149 (2013).
20. Koenig, J. E. et al. Succession of microbial consortia in the developing infant gut microbiome. Proc. Natl Acad. Sci. 108(Suppl 1): 4578-4585 (2011).
21. David, L. A. et al. Gut microbial succession follows acute secretory diarrhea in humans. mBio 6, e00381-15 (2015).
22. Nemergut, D. R. et al. Microbial community succession in an unvegetated, recently deglaciated soil. Microb. Ecol. 53, 110-122 (2007).
23. Teeling, H. et al. Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science 336, 608-611 (2012).
24. Chauhan, A., Cherrier, J. & Williams, H. N. Impact of sideways and bottom-up control factors on bacterial community succession over a tidal cycle. Proc. Natl Acad. Sci. 106, 4301-4306 (2009).
25. Fukami, T. Historical contingency in community assembly: integrating niches, species pools, and priority effects. Annu. Rev. Ecol. Evol. Syst. 46, 1-23 (2015).
26. Connell, J. H. & Slatyer, R. O. Mechanisms of succession in natural communities and their role in community stability and organization. Am. Nat. 111, 1119-1144 (1977).
27. Fierer, N., Nemergut, D., Knight, R. & Craine, J. M. Changes through time: integrating microorganisms into the study of succession. Res. Microbiol. 161, 635-642 (2010).
28. Jagmann, N., von Rekowski, K. S. & Philipp, B. Interactions of bacteria with different mechanisms for chitin degradation result in the formation of a mixedspecies biofilm. FEMS Microbiol. Lett. 326, 69-75 (2012).
29. Riemann, L. & Azam, F. Widespread N-acetyl-D-glucosamine uptake among pelagic marine bacteria and its ecological implications. Appl. Environ. Microbiol. 68, 5554-5562 (2002).
30. Drescher, K., Nadell, C. D., Stone, H. A., Wingreen, N. S. & Bassler, B. L. Solutions to the public goods dilemma in bacterial biofilms. Curr. Biol. 24, 50-55 (2014).
31. Preheim, S. P., Perrotta, A. R., Martin-Platero, A. M., Gupta, A. & Alm, E. J. Distribution-based clustering: using ecology to refine the operational taxonomic unit. Appl. Environ. Microbiol. 79, 6593-6603 (2013).
32. Ramirez, M. G., Avelizapa, L. & Avelizapa, N. Colloidal chitin stained with Remazol Brilliant Blue R, a useful substrate to select chitinolytic microorganisms and to evaluate chitinases. J. Microbiol. Methods 56, 213-219 (2004).