-
1
-
-
77954935933
-
A model of redox kinetics implicates the thiol proteome in cellular hydrogen peroxide responses
-
Adimora, N.J., Jones, D.P., and Kemp, M.L. (2010). A model of redox kinetics implicates the thiol proteome in cellular hydrogen peroxide responses. Antioxid. Redox Signal. 13, 731-743.
-
(2010)
Antioxid. Redox Signal
, vol.13
, pp. 731-743
-
-
Adimora, N.J.1
Jones, D.P.2
Kemp, M.L.3
-
2
-
-
0031877016
-
Combining evidence using pvalues: Application to sequence homology searches
-
Bailey, T.L., and Gribskov, M. (1998a). Combining evidence using pvalues: application to sequence homology searches. Bioinformatics 14, 48-54.
-
(1998)
Bioinformatics
, vol.14
, pp. 48-54
-
-
Bailey, T.L.1
Gribskov, M.2
-
3
-
-
0031901903
-
Methods and statistics for combining motif match scores
-
Bailey, T.L., and Gribskov, M. (1998b). Methods and statistics for combining motif match scores. J. Comput. Biol. 5, 211-221.
-
(1998)
J. Comput. Biol
, vol.5
, pp. 211-221
-
-
Bailey, T.L.1
Gribskov, M.2
-
4
-
-
46849118983
-
Thermodynamics of the dimer-decamer transition of reduced human and plant 2-cys peroxiredoxin
-
Barranco-Medina, S., Kakorin, S., Lazaro, J.J., and Dietz, K.J. (2008). Thermodynamics of the dimer-decamer transition of reduced human and plant 2-cys peroxiredoxin. Biochemistry 47, 7196-7204.
-
(2008)
Biochemistry
, vol.47
, pp. 7196-7204
-
-
Barranco-Medina, S.1
Kakorin, S.2
Lazaro, J.J.3
Dietz, K.J.4
-
5
-
-
0242579195
-
Structure-based active site profiles for genome analysis and functional family subclassification
-
Cammer, S.A., Hoffman, B.T., Speir, J.A., Canady, M.A., Nelson, M.R., Knutson, S., Gallina, M., Baxter, S.M., and Fetrow, J.S. (2003). Structure-based active site profiles for genome analysis and functional family subclassification. J. Mol. Biol. 334, 387-401.
-
(2003)
J. Mol. Biol
, vol.334
, pp. 387-401
-
-
Cammer, S.A.1
Hoffman, B.T.2
Speir, J.A.3
Canady, M.A.4
Nelson, M.R.5
Knutson, S.6
Gallina, M.7
Baxter, S.M.8
Fetrow, J.S.9
-
6
-
-
0028226006
-
Cloning and sequencing of thiol-specific antioxidant from mammalian brain: Alkyl hydroperoxide reductase and thiol-specific antioxidant define a large family of antioxidant enzymes
-
USA
-
Chae, H.Z., Robison, K., Poole, L.B., Church, G., Storz, G., and Rhee, S.G. (1994a). Cloning and sequencing of thiol-specific antioxidant from mammalian brain: alkyl hydroperoxide reductase and thiol-specific antioxidant define a large family of antioxidant enzymes. Proc. Natl. Acad. Sci. USA 91, 7017-7021.
-
(1994)
Proc. Natl. Acad. Sci
, vol.91
, pp. 7017-7021
-
-
Chae, H.Z.1
Robison, K.2
Poole, L.B.3
Church, G.4
Storz, G.5
Rhee, S.G.6
-
7
-
-
0028229670
-
Dimerization of thiol-specific antioxidant and the essential role of cysteine 47
-
USA
-
Chae, H.Z., Uhm, T.B., and Rhee, S.G. (1994b). Dimerization of thiol-specific antioxidant and the essential role of cysteine 47. Proc. Natl. Acad. Sci. USA 91, 7022-7026.
-
(1994)
Proc. Natl. Acad. Sci
, vol.91
, pp. 7022-7026
-
-
Chae, H.Z.1
Uhm, T.B.2
Rhee, S.G.3
-
8
-
-
8344281472
-
Divergence of function in the thioredoxin fold suprafamily: Evidence for evolution of peroxiredoxins from a thioredoxin-like ancestor
-
Copley, S.D., Novak, W.R., and Babbitt, P.C. (2004). Divergence of function in the thioredoxin fold suprafamily: evidence for evolution of peroxiredoxins from a thioredoxin-like ancestor. Biochemistry 43, 13981-13995.
-
(2004)
Biochemistry
, vol.43
, pp. 13981-13995
-
-
Copley, S.D.1
Novak, W.R.2
Babbitt, P.C.3
-
9
-
-
78650992200
-
Peroxiredoxins in plants and cyanobacteria
-
Dietz, K.J. (2011). Peroxiredoxins in plants and cyanobacteria. Antioxid. Redox Signal. 15, 1129-1159.
-
(2011)
Antioxid. Redox Signal
, vol.15
, pp. 1129-1159
-
-
Dietz, K.J.1
-
10
-
-
84907484427
-
Key roles of the Escherichia coli AhpC Cterminus in assembly and catalysis of alkylhydroperoxide reductase, an enzyme essential for the alleviation of oxidative stress
-
Dip, P.V., Kamariah, N., Nartey, W., Beushausen, C., Kostyuchenko, V.A., Ng, T.S., Lok, S.M., Saw, W.G., Eisenhaber, F., Eisenhaber, B., et al. (2014). Key roles of the Escherichia coli AhpC Cterminus in assembly and catalysis of alkylhydroperoxide reductase, an enzyme essential for the alleviation of oxidative stress. Biochim. Biophys. Acta 1837, 1932-1943.
-
(2014)
Biochim. Biophys. Acta
, vol.1837
, pp. 1932-1943
-
-
Dip, P.V.1
Kamariah, N.2
Nartey, W.3
Beushausen, C.4
Kostyuchenko, V.A.5
Ng, T.S.6
Lok, S.M.7
Saw, W.G.8
Eisenhaber, F.9
Eisenhaber, B.10
-
11
-
-
0030822346
-
Roles for the two cysteine residues of AhpC in catalysis of peroxide reduction by alkyl hydroperoxide reductase from Salmonella typhimurium
-
Ellis, H.R., and Poole, L.B. (1997). Roles for the two cysteine residues of AhpC in catalysis of peroxide reduction by alkyl hydroperoxide reductase from Salmonella typhimurium. Biochemistry 36, 13349-13356.
-
(1997)
Biochemistry
, vol.36
, pp. 13349-13356
-
-
Ellis, H.R.1
Poole, L.B.2
-
12
-
-
79954542342
-
Factors affecting protein thiol reactivity and specificity in peroxide reduction
-
Ferrer-Sueta, G., Manta, B., Botti, H., Radi, R., Trujillo, M., and Denicola, A. (2011). Factors affecting protein thiol reactivity and specificity in peroxide reduction. Chem. Res. Toxicol. 24, 434-450.
-
(2011)
Chem. Res. Toxicol
, vol.24
, pp. 434-450
-
-
Ferrer-Sueta, G.1
Manta, B.2
Botti, H.3
Radi, R.4
Trujillo, M.5
Denicola, A.6
-
13
-
-
77956207316
-
Changing paradigms in thiology from antioxidant defense toward redox regulation
-
Flohé, L. (2010). Changing paradigms in thiology from antioxidant defense toward redox regulation. Methods Enzymol. 473, 1-39.
-
(2010)
Methods Enzymol
, vol.473
, pp. 1-39
-
-
Flohé, L.1
-
14
-
-
77956171017
-
Structural evidence that peroxiredoxin catalytic power is based on transition-state stabilization
-
Hall, A., Parsonage, D., Poole, L.B., and Karplus, P.A. (2010). Structural evidence that peroxiredoxin catalytic power is based on transition-state stabilization. J. Mol. Biol. 402, 194-209.
-
(2010)
J. Mol. Biol
, vol.402
, pp. 194-209
-
-
Hall, A.1
Parsonage, D.2
Poole, L.B.3
Karplus, P.A.4
-
15
-
-
79958059617
-
Structurebased insights into the catalytic power and conformational dexterity of peroxiredoxins
-
Hall, A., Nelson, K., Poole, L.B., and Karplus, P.A. (2011). Structurebased insights into the catalytic power and conformational dexterity of peroxiredoxins. Antioxid. Redox Signal. 15, 795-815.
-
(2011)
Antioxid. Redox Signal
, vol.15
, pp. 795-815
-
-
Hall, A.1
Nelson, K.2
Poole, L.B.3
Karplus, P.A.4
-
16
-
-
38049044980
-
Structure of the sulphiredoxin-peroxiredoxin complex reveals an essential repair embrace
-
Jönsson, T.J., Johnson, L.C., and Lowther, W.T. (2008). Structure of the sulphiredoxin-peroxiredoxin complex reveals an essential repair embrace. Nature 451, 98-101.
-
(2008)
Nature
, vol.451
, pp. 98-101
-
-
Jönsson, T.J.1
Johnson, L.C.2
Lowther, W.T.3
-
17
-
-
38749091365
-
Evolution of the peroxiredoxins: Taxonomy, homology and characterization
-
L. Flohé, and J.R. Harris, eds. (New York, Springer
-
Knoops, B., Loumaye, E., and Van der Eecken, V. (2007). Evolution of the peroxiredoxins: taxonomy, homology and characterization. In peroxiredoxin systems, L. Flohé, and J.R. Harris, eds. (New York, Springer), pp. 27-40.
-
(2007)
Peroxiredoxin Systems
, pp. 27-40
-
-
Knoops, B.1
Loumaye, E.2
Van Der Eecken, V.3
-
18
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., McGettigan, P.A., McWilliam, H., Valentin, F., Wallace, I.M., Wilm, A., Lopez, R., et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
-
19
-
-
84950123682
-
Comparison of topological clustering within protein networks using edge metrics that evaluate full sequence, full structure, and active site microenvironment similarity
-
Leuthaeuser, J.B., Knutson, S.T., Kumar, K., Babbitt, P.C., and Fetrow, J.S. (2015). Comparison of topological clustering within protein networks using edge metrics that evaluate full sequence, full structure, and active site microenvironment similarity. Protein Sci. 24, 1423-1439.
-
(2015)
Protein Sci
, vol.24
, pp. 1423-1439
-
-
Leuthaeuser, J.B.1
Knutson, S.T.2
Kumar, K.3
Babbitt, P.C.4
Fetrow, J.S.5
-
20
-
-
79551493261
-
Analysis of the peroxiredoxin family: Using active-site structure and sequence information for global classification and residue analysis
-
Nelson, K.J., Knutson, S.T., Soito, L., Klomsiri, C., Poole, L.B., and Fetrow, J.S. (2011). Analysis of the peroxiredoxin family: Using active-site structure and sequence information for global classification and residue analysis. Proteins 79, 947-964.
-
(2011)
Proteins
, vol.79
, pp. 947-964
-
-
Nelson, K.J.1
Knutson, S.T.2
Soito, L.3
Klomsiri, C.4
Poole, L.B.5
Fetrow, J.S.6
-
21
-
-
23244466487
-
Analysis of the link between enzymatic activity and oligomeric state in AhpC, a bacterial peroxiredoxin
-
Parsonage, D., Youngblood, D.S., Sarma, G.N., Wood, Z.A., Karplus, P.A., and Poole, L.B. (2005). Analysis of the link between enzymatic activity and oligomeric state in AhpC, a bacterial peroxiredoxin. Biochemistry 44, 10583-10592.
-
(2005)
Biochemistry
, vol.44
, pp. 10583-10592
-
-
Parsonage, D.1
Youngblood, D.S.2
Sarma, G.N.3
Wood, Z.A.4
Karplus, P.A.5
Poole, L.B.6
-
22
-
-
84937519769
-
Peroxiredoxins: Guardians against oxidative stress and modulators of peroxide signaling
-
Perkins, A., Nelson, K.J., Parsonage, D., Poole, L.B., and Karplus, P.A. (2015). Peroxiredoxins: guardians against oxidative stress and modulators of peroxide signaling. Trends Biochem. Sci. 40, 435-445.
-
(2015)
Trends Biochem. Sci
, vol.40
, pp. 435-445
-
-
Perkins, A.1
Nelson, K.J.2
Parsonage, D.3
Poole, L.B.4
Karplus, P.A.5
-
23
-
-
84923919258
-
The basics of thiols and cysteines in redox biology and chemistry
-
Poole, L.B. (2015). The basics of thiols and cysteines in redox biology and chemistry. Free Radic. Biol. Med. 80, 148-157.
-
(2015)
Free Radic. Biol. Med
, vol.80
, pp. 148-157
-
-
Poole, L.B.1
-
24
-
-
74549221383
-
Annotation error in public databases: Misannotation of molecular function in enzyme superfamilies
-
Schnoes, A.M., Brown, S.D., Dodevski, I., and Babbitt, P.C. (2009). Annotation error in public databases: misannotation of molecular function in enzyme superfamilies. PLoS Comput. Biol. 5, e1000605.
-
(2009)
Plos Comput. Biol
, vol.5
-
-
Schnoes, A.M.1
Brown, S.D.2
Dodevski, I.3
Babbitt, P.C.4
-
25
-
-
78651278810
-
PREX: PeroxiRedoxin classification indEX, a database of subfamily assignments across the diverse peroxiredoxin family
-
Soito, L., Williamson, C., Knutson, S.T., Fetrow, J.S., Poole, L.B., and Nelson, K.J. (2011). PREX: PeroxiRedoxin classification indEX, a database of subfamily assignments across the diverse peroxiredoxin family. Nucleic Acids Res. 39, D332-D337.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D332-D337
-
-
Soito, L.1
Williamson, C.2
Knutson, S.T.3
Fetrow, J.S.4
Poole, L.B.5
Nelson, K.J.6
-
26
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
27
-
-
42249088093
-
Reconciling the chemistry and biology of reactive oxygen species
-
Winterbourn, C.C. (2008). Reconciling the chemistry and biology of reactive oxygen species. Nat. Chem. Biol. 4, 278-286.
-
(2008)
Nat. Chem. Biol
, vol.4
, pp. 278-286
-
-
Winterbourn, C.C.1
-
28
-
-
0037197672
-
Dimers to doughnuts: Redox-sensitive oligomerization of 2-cysteine peroxiredoxins
-
Wood, Z.A., Poole, L.B., Hantgan, R.R., and Karplus, P.A. (2002). Dimers to doughnuts: redox-sensitive oligomerization of 2-cysteine peroxiredoxins. Biochemistry 41, 5493-5504.
-
(2002)
Biochemistry
, vol.41
, pp. 5493-5504
-
-
Wood, Z.A.1
Poole, L.B.2
Hantgan, R.R.3
Karplus, P.A.4
|