Parallel processing for scanning genomic data-bases

Advances in Parallel Computing

Volumn 12, Issue C, 1998, Pages 81-88

  Lavenier, D ^b   Pacherie, J L ^a  

^a CAMPUS DE BEAULIEU   (France)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84974685463     PISSN: 09275452     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0927-5452(98)80008-7     Document Type: Chapter

References (11)

1. Glemet, E., Codani, J.J., LASSAP, a LArge Scale Sequence compArison Package. CABIOS 13:2 (1997), 137–143.
2. Wozniak, A., Using video-oriented instructions to speed up sequence comparison. CABIOS 13:2 (1997), 145–150.
3. Lavenier, D., Dedicated Hardware for Biological Sequence Comparison. Journal of Universal Computer Science 2:2 (1996), 77–86.
4. Lavenier, D., SAMBA: Systolic Accelerator for Molecular Biological Applications. Technical Report RR 2845, 1996, INRIA.
5. P. Guerdoux-Jamet, D. Lavenier, C. Wagner and P. Quinton. Design and Implementation of a Parallel Architecture for Biological Sequence Comparison. In LNCS 1123 (EURO-PAR'96), Lyon, France, 1996.
6. SiliconGraphics, The perfect system for evolving compute, memory, and I/O. http://www.sgi.com/Products/hardware/servers/products/Origin2000Desk.html, 1996.
7. Alpern, B., Carter, L., Gatlin, K.S., Microparallelism and High-Performance Protein Matching. Proceedings of the 1995 ACM/IEEE Supercomputing Conference, San Diego, California, USA, 1995.
8. Guidec, F., Mahéo, Y., POM: a Parallel Observable Machine. Proceedings of PARCO'95, Gent, Belgium, 1995.
9. Vuillemin, J.E., On computing power. LNCS 782 (1993), 69–86.
10. Gotoh, O., An Improved Algorithm for Matching Biological Sequences. J. Mol. Biol. 162 (1982), 705–708.
11. Smith, T.F., Waterman, M.S., Identification of Common Molecular Subsequences. J. Mol. Biol. 147 (1981), 195–197.