메뉴 건너뛰기




Volumn 6, Issue , 2016, Pages

Phylogenomic analyses of bat subordinal relationships based on transcriptome data

Author keywords

[No Author keywords available]

Indexed keywords

ANATOMY AND HISTOLOGY; ANIMAL; BAT; CLASSIFICATION; FOSSIL; GENE EXPRESSION PROFILING; GENETICS; MOLECULAR EVOLUTION; PHYLOGENY; PROCEDURES; SEQUENCE ANALYSIS;

EID: 84974628142     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep27726     Document Type: Article
Times cited : (64)

References (32)
  • 3
    • 28844486352 scopus 로고    scopus 로고
    • Fossil evidence and the origin of bats
    • Gunnell, G. & Simmons, N. Fossil Evidence and the Origin of Bats. J Mammal Evol 12, 209-246, doi: 10.1007/s10914-005-6945-2 (2005).
    • (2005) J Mammal Evol , vol.12 , pp. 209-246
    • Gunnell, G.1    Simmons, N.2
  • 6
    • 0037022361 scopus 로고    scopus 로고
    • Microbat paraphyly and the convergent evolution of a key innovation in Old World rhinolophoid microbats
    • Teeling, E. C. et al. Microbat paraphyly and the convergent evolution of a key innovation in Old World rhinolophoid microbats. Proceedings of the National Academy of Sciences of the United States of America 99, 1431-1436, doi: 10.1073/pnas.022477199 (2002).
    • (2002) Proceedings of the National Academy of Sciences of the United States of America , vol.99 , pp. 1431-1436
    • Teeling, E.C.1
  • 7
    • 84889090318 scopus 로고    scopus 로고
    • Phylogenomic analyses elucidate the evolutionary relationships of bats
    • Tsagkogeorga, G., Parker, J., Stupka, E., Cotton, J. A. & Rossiter, S. J. Phylogenomic analyses elucidate the evolutionary relationships of bats. Current biology : CB 23, 2262-2267, doi: 10.1016/j.cub.2013.09.014 (2013).
    • (2013) Current Biology : CB , vol.23 , pp. 2262-2267
    • Tsagkogeorga, G.1    Parker, J.2    Stupka, E.3    Cotton, J.A.4    Rossiter, S.J.5
  • 8
    • 84873492863 scopus 로고    scopus 로고
    • The placental mammal ancestor and the post-K-Pg radiation of placentals
    • O'Leary, M. A. et al. The placental mammal ancestor and the post-K-Pg radiation of placentals. Science 339, 662-667, doi: 10.1126/science.1229237 (2013).
    • (2013) Science , vol.339 , pp. 662-667
    • O'Leary, M.A.1
  • 9
    • 0036699885 scopus 로고    scopus 로고
    • Increased taxon sampling is advantageous for phylogenetic inference
    • Pollock, D. D., Zwickl, D. J., McGuire, J. A. & Hillis, D. M. Increased taxon sampling is advantageous for phylogenetic inference. Systematic biology 51, 664-671, doi: 10.1080/10635150290102357 (2002).
    • (2002) Systematic Biology , vol.51 , pp. 664-671
    • Pollock, D.D.1    Zwickl, D.J.2    McGuire, J.A.3    Hillis, D.M.4
  • 10
    • 0016669094 scopus 로고
    • Evolution at two levels in humans and chimpanzees
    • King, M. C. & Wilson, A. C. Evolution at two levels in humans and chimpanzees. Science 188, 107-116 (1975).
    • (1975) Science , vol.188 , pp. 107-116
    • King, M.C.1    Wilson, A.C.2
  • 11
    • 80054973803 scopus 로고    scopus 로고
    • A high-resolution map of human evolutionary constraint using 29 mammals
    • Lindblad-Toh, K. et al. A high-resolution map of human evolutionary constraint using 29 mammals. Nature 478, 476-482, doi: 10.1038/nature10530 (2011).
    • (2011) Nature , vol.478 , pp. 476-482
    • Lindblad-Toh, K.1
  • 12
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr, M. G. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature biotechnology 29, 644-652, doi: 10.1038/nbt.1883 (2011).
    • (2011) Nature Biotechnology , vol.29 , pp. 644-652
    • Grabherr, M.G.1
  • 13
    • 12844251802 scopus 로고    scopus 로고
    • A molecular phylogeny for bats illuminates biogeography and the fossil record
    • Teeling, E. C. et al. A molecular phylogeny for bats illuminates biogeography and the fossil record. Science 307, 580-584, doi: 10.1126/science.1105113 (2005).
    • (2005) Science , vol.307 , pp. 580-584
    • Teeling, E.C.1
  • 14
    • 79960130696 scopus 로고    scopus 로고
    • TimeTree2: Species divergence times on the iPhone
    • Kumar, S. & Hedges, S. B. TimeTree2: species divergence times on the iPhone. Bioinformatics 27, 2023-2024, doi: 10.1093/bioinformatics/btr315 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 2023-2024
    • Kumar, S.1    Hedges, S.B.2
  • 15
    • 52949152371 scopus 로고    scopus 로고
    • Phylogenetic inference using whole genomes
    • Rannala, B. & Yang, Z. Phylogenetic inference using whole genomes. Annual review of genomics and human genetics 9, 217-231, doi: 10.1146/annurev.genom.9.081307.164407 (2008).
    • (2008) Annual Review of Genomics and Human Genetics , vol.9 , pp. 217-231
    • Rannala, B.1    Yang, Z.2
  • 17
    • 83555166100 scopus 로고    scopus 로고
    • Resolving the evolutionary relationships of molluscs with phylogenomic tools
    • Smith, S. A. et al. Resolving the evolutionary relationships of molluscs with phylogenomic tools. Nature 480, 364-367, doi: 10.1038/nature10526 (2011).
    • (2011) Nature , vol.480 , pp. 364-367
    • Smith, S.A.1
  • 18
    • 84919665052 scopus 로고    scopus 로고
    • Phylogenomic resolution of the hemichordate and echinoderm clade
    • Cannon, J. T. et al. Phylogenomic resolution of the hemichordate and echinoderm clade. Current biology : CB 24, 2827-2832, doi: 10.1016/j.cub.2014.10.016 (2014).
    • (2014) Current Biology : CB , vol.24 , pp. 2827-2832
    • Cannon, J.T.1
  • 19
  • 20
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: A revolutionary tool for transcriptomics. Nature reviews
    • Wang, Z., Gerstein, M. & Snyder, M. RNA-Seq: a revolutionary tool for transcriptomics. Nature reviews. Genetics 10, 57-63, doi: 10.1038/nrg2484 (2009).
    • (2009) Genetics , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 21
    • 22744439568 scopus 로고    scopus 로고
    • Evolution at two levels: On genes and form
    • Carroll, S. B. Evolution at two levels: on genes and form. PLoS biology 3, e245, doi: 10.1371/journal.pbio.0030245 (2005).
    • (2005) PLoS Biology , vol.3 , pp. e245
    • Carroll, S.B.1
  • 22
    • 0034642538 scopus 로고    scopus 로고
    • Molecular evidence regarding the origin of echolocation and flight in bats
    • Teeling, E. C. et al. Molecular evidence regarding the origin of echolocation and flight in bats. Nature 403, 188-192, doi: 10.1038/35003188 (2000).
    • (2000) Nature , vol.403 , pp. 188-192
    • Teeling, E.C.1
  • 23
    • 0042043052 scopus 로고    scopus 로고
    • Phylogenetic relationships of Icaronycteris, Archaeonycteris, Hassianycteris, and Palaeochiropteryx to extant bat lineages, with comments on the evolution of echolocation and foraging strategies in Microchiroptera
    • Simmons, N. B. & Geisler, J. H. Phylogenetic relationships of Icaronycteris, Archaeonycteris, Hassianycteris, and Palaeochiropteryx to extant bat lineages, with comments on the evolution of echolocation and foraging strategies in Microchiroptera. B Am Mus Nat Hist, 4-182 (1998).
    • (1998) B Am Mus Nat Hist , pp. 4-182
    • Simmons, N.B.1    Geisler, J.H.2
  • 24
    • 84885574505 scopus 로고    scopus 로고
    • Genome-wide signatures of convergent evolution in echolocating mammals
    • Parker, J. et al. Genome-wide signatures of convergent evolution in echolocating mammals. Nature 502, 228-231, doi: 10.1038/nature12511 (2013).
    • (2013) Nature , vol.502 , pp. 228-231
    • Parker, J.1
  • 25
    • 77957151956 scopus 로고    scopus 로고
    • SolexaQA: At-A-glance quality assessment of Illumina second-generation sequencing data
    • Cox, M. P., Peterson, D. A. & Biggs, P. J. SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data. BMC bioinformatics 11, 485, doi: 10.1186/1471-2105-11-485 (2010).
    • (2010) BMC Bioinformatics , vol.11 , pp. 485
    • Cox, M.P.1    Peterson, D.A.2    Biggs, P.J.3
  • 26
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li, W. & Godzik, A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22, 1658-1659, doi: 10.1093/bioinformatics/btl158 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 27
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
    • Katoh, K. & Standley, D. M. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular biology and evolution 30, 772-780, doi: 10.1093/molbev/mst010 (2013).
    • (2013) Molecular Biology and Evolution , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 28
    • 84899553363 scopus 로고    scopus 로고
    • RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
    • Stamatakis, A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312-1313, doi: 10.1093/bioinformatics/btu033 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 1312-1313
    • Stamatakis, A.1
  • 29
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira, H. An approximately unbiased test of phylogenetic tree selection. Systematic biology 51, 492-508, doi: 10.1080/10635150290069913 (2002).
    • (2002) Systematic Biology , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 30
    • 84907019380 scopus 로고    scopus 로고
    • ASTRAL: Genome-scale coalescent-based species tree estimation
    • Mirarab, S. et al. ASTRAL: genome-scale coalescent-based species tree estimation. Bioinformatics 30, i541-548, doi: 10.1093/bioinformatics/btu462 (2014).
    • (2014) Bioinformatics , vol.30 , pp. i541-i548
    • Mirarab, S.1
  • 31
    • 77951961553 scopus 로고    scopus 로고
    • Phybase: An R package for species tree analysis
    • Liu, L. & Yu, L. Phybase: an R package for species tree analysis. Bioinformatics 26, 962-963, doi: 10.1093/bioinformatics/btq062 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 962-963
    • Liu, L.1    Yu, L.2
  • 32
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang, Z. PAML 4: phylogenetic analysis by maximum likelihood. Molecular biology and evolution 24, 1586-1591, doi: 10.1093/molbev/msm088 (2007).
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1586-1591
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.